G3基因工程菌发酵中pH值对包涵体型及目的蛋白表达的影响

在不同ｐＨ值条件下摇瓶及罐发酵Ｇ３双体分子重组菌。探讨ｐＨ值对Ｇ３双体分子包涵体形成及目的蛋白表达水平的影响，确定Ｇ３双体分子重组菌发酵最佳ｐＨ值为生长期ｐＨ７．０－＃．２，生产期ｐ６．７－６．８。     

发酵重组Pichia pastoris生产腺苷甲硫氨酸的研究

在5L发酵罐中对高产S腺苷甲硫氨酸的重组Pichia pastoris发酵进行了研究。重组菌在pH5．0生长,然后调为pH6．0积累腺苷甲硫氨酸,在30℃、溶氧5％及流加甲硫氨酸和尿素的条件下培养82h后,产量达4．3g／L。     

重组人G-CSF双体分子的构建表达及生物活性和结构特性分析

研究目的是分子设计并构建较G—CSF。单体分子具有半衰期更长、生物活性更高的新型重组人G—CSF／G—CSF双体分子(简称G-G),并在原核系统进行高效表达。分别构建pET32／G—G和pET32／G原核表达载体,实现G-G双体融合蛋白在大肠杆菌中的高效表达,利用亲和层析等方法进行蛋白纯化;对该融合蛋白的结构特征诸如等电点、柔性、抗原性及亲水性进行模拟分析;采用MTT法对G-G双体融合蛋白的生物学活性进行测定。结果首次构建成功了G-G双体分子融合蛋白高效表达载体,表达量高于40％,一步亲和层析所获融合蛋白的纯度为80％左右。该融合蛋白的结构特征模拟分析的结果显示,G-CSF双体分子的等电点、柔性、抗原性及亲水性均未显改变。活性测定表明,所构建表达的重组人G-G双体分子能有效刺激G—CSF依赖细胞株NFS-60的增殖,但其刺激效应低于G-CSF的单体和标准品。结果表明,所构建表达的G-CSF的单体和G-G双体分子均可在大肠杆菌中获得高效表达,但G-G双体分子的比活性不及G-CSF单体分子,与预期设想的有差别,其原因正在研究之中。     

Vc二步发酵伴生菌巨大芽孢杆菌的选育

巨大芽孢杆菌经紫外线诱变,获得2株耐低pH、抗KGA的菌株：Bn,B5。在pH6.7～7．0的发酵培养基中与氧化葡萄糖酸杆菌发酵,Bn和B5的平均糖酸转化率分别提高3.5％,3．3％.在pH6．2的发酵培养基中,平均糖酸转化率提高11．4％,12．3％。在pH6．2和pH7．0含3％KGA的培养基中,2菌提前3～6h到达对数生长期,稳定期延长3～6h.经连续30代转接,特性稳定。     

3-羟基丙酸分批发酵过程中的pH控制策略研究

本文利用重组大肠杆菌以甘油为底物发酵合成3．羟基丙酸,考察了不同pH对3．羟基丙酸产量及菌体生长的影响,发现在pH6．5条件下,细胞比生长速率达到最大值,延迟期也相对较短;而pH7．0有利于3-羟基丙酸的合成,控制pH7．0可以使3-羟基丙酸产量达到7．39g／L。基于不同pH条件下对细胞比生长速率和3-羟基丙酸比生成速率的分析,提出3．羟基丙酸分批发酵过程中的pH控制策略,即在发酵过程前5h将pH控制在6．5,5h～15h控制pH为7．0,此时有利于细胞生长;而后在15h-25h控制pH为7．5,25h后控制pH为7．0,从而使细胞具有较高的3．羟基丙酸比合成速率。在此控制策略下经过34h发酵3-羟基丙酸的终产量达到8．76g／L,比pH7．0条件下的3-羟基丙酸产量提高了18．54％。     

一株高效解磷肠膜明串珠菌的分离鉴定及解磷能力研究

【背景】植物根际土壤含有多种溶磷微生物,但是具有溶磷能力的肠膜明串珠菌未见报道。【目的】从脐橙根际土壤分离高效解磷菌,研究其解磷应用。【方法】通过初筛和复筛从23株菌中筛选解磷能力较强的菌株,同时采用钼蓝比色法测定磷含量。通过测定发酵液中小分子有机酸含量、磷酸酯酶酶活及pH值的变化,探究菌株的解磷机理。【结果】经过筛选得到9株具有一定解磷能力的菌株。通过菌种16S rRNA基因序列分析和生理生化实验确定其中一株菌为肠膜明串珠菌,命名为肠膜明串珠菌G7。培养基初始pH6.0、碳源为葡萄糖、氮源为硫酸铵时G7的解磷能力较佳。G7发酵过程中产生大量有机酸,而其酸性磷酸酯酶活性高于碱性磷酸酯酶。【结论】碳源、氮源以及初始pH值都能影响G7的解磷能力,其解磷能力主要缘于在发酵过程中产生了大量小分子有机酸,关于G7的解磷机理还需要更深入的研究。     

不同pH调节剂对补料批式发酵产1,3-丙二醇的影响

对肺炎克雷伯氏菌（Klebsiellapneumoniae）发酵生产1,3-丙二醇（1,3-Propanediol,1,3．PD）的补碱策略进行了研究。分别利用NaOH、氨水、KOH三种溶液作为pH调节剂,优化三种pH调节剂并得到按一定比例混合的混合碱。当采用混合碱调控发酵pH值为7．0时,1,3-丙二醇的产量达到了55dL,比无pH调控（对照）发酵过程发酵水平提高了10．6倍。     

响应面分析法优化耐高温蛋白酶发酵培养基

采用响应面分析方法对产耐高温蛋白酶的苏云金芽孢杆菌(Bacillus thuringien- sis)FZ62发酵培养基进行优化．首先,进行发酵培养基碳源、氮源及初始pH值的单因素筛选,优化结果表明最适氮源为酵母粉、碳源是葡萄糖,初始pH值范围6-8．在此基础经响应面法优化,发酵培养基最佳组合为:酵母粉2．04%,葡萄糖为0．10%,初始pH7．07．经以上优化后发酵水平比初始设计提高了3．22倍．     

嗜热毛壳菌(Chaetomium thermophile)液体发酵产生纤维素酶及酶学性质的研究

探讨了嗜热真菌Chaetomium thermophile产生纤维素酶的液体发酵条件及滤纸酶(FPA)的特性。采用液体发酵培养法,通过对碳源、氮源、培养时间、培养基的起始pH值及产酶过程中pH值和蛋白质含量变化的研究发现：在2％纤维素、1％可溶性淀粉为碳源;2．0％KNO3 0．2％酵母粉为氮源;起始pH值为6．5,50℃下培养9d后,各种酶活最高。发酵过程中,pH值和蛋白质的含量均在前3d下降,后升高。FPA的反应最适温度和pH值分别为60℃和5．5～6．0;且具有较高的热稳定性和DH稳定性。     

不同碳氮比对薄盖灵芝液体培养的影响

采取液体深层发酵的方法 ,研究了不同碳氮比对薄盖灵芝 [Ganodermacapense (Lloyd)Teng]液体培养的影响。结果表明 ,在氮量固定的情况下 ,随碳量的增加 ,薄盖灵芝菌丝体干重逐渐增大 ,各处理发酵液的pH值呈“上升→下降→平稳”的变化趋势 ;当碳量固定时 ,各处理的pH值变化基本呈“双峰”型。不同碳氮比对薄盖灵芝液体发酵影响较大 ,通过对菌丝生长量、pH值的测定以及对发酵液及菌球培养性状的观察 ,认为碳氮比在 2 0∶1～ 4 0∶1(C3～C7)对薄盖灵芝的液体发酵均较适宜。其中以 30∶1(C5 )为最适宜 ,在此条件下 ,终止发酵的pH值为 3 4 ,菌球数量虽为 113个 10mL发酵液 ,但菌丝体干重为 6 83 4mg dL。发酵液澄清度高 ,呈真溶液状 ,菌球大小均匀。     

Unequal SCE is a rare event in homologous recombination between duplicated neo gene fragments in CHO cells

The frequency of sister-chromatid exchange (SCE) was studied in Chinese hamster ovary (CHO) cell lines with stable insertions of the vector pIII-14gpt which contains 2 truncated neomycin resistance (neo) gene fragments. Recombination between regions of homology in the 2 fragments can restore a functional neo gene and make the cell resistant to the antibiotic G418, a neomycin analogue. Unequal SCE would be one of several possible mechanisms for this event. The observed spontaneous rate of formation of G418-resistant subclones was approximately 6.4 x 10(-6) per cell per generation, as compared to the estimated spontaneous frequency of 3 SCE per cell per generation. Given this SCE frequency, the probability of an SCE occurring in a target site of about 1600 bp (the distance separating the homologous regions in the neo fragments) would be about 8 x 10(-7) per cell per generation, or approximately one tenth of the estimated rate of recombination. Treatment of the cells with methyl methanesulfonate (MMS, 50 x 10(-6) M) induced about 80-90 SCE per cell, corresponding to a probability of 2 x 10(-5) SCE per 1600-bp target per cell. In the same cell culture, MMS treatment induced 4-8 x 10(-4) recombination events per cell giving rise to G418 resistance. Cells treated with HN2 (up to 4 x 10(-6) M) showed a significant increase in SCEs, but no change in the frequency of G418-resistant revertants. These results suggest that the 2 pathways leading to SCE and recombination respectively are uncoupled, and only a small fraction of the recombination events, if any, are due to unequal SCE in this system.     

Initiation of recombination during transformation of Bacillus subtilis requires no extensive homologous sequences

Summary Lysates obtained shortly after entry of transforming DNA to Bacillus subtilis contain donor-recipient DNA complexes, in which the donor moiety is associated with the recipient DNA in an unstable way. The complexes could be artificially stabilized by crosslinking with 4,5,8-trimethylpsoralen. The unstable complexes dissociated upon helix-destabilizing treatments, such as heating at 70°C, and CsCl gradient centrifugation at pH 11.2, but remained stable during CsCl gradient centrifugation at pH 10. Donor-recipient DNA complexes were not formed after entry of heterologous pUB110 DNA. These observations suggest that base-pairing is involved in the unstable association. The donor moiety of the unstable complexes was completely, or almost completely, digestible by nuclease S₁, indicating that the donor and recipient base-sequences are only paired over very short distances.The unstable donor-recipient DNA complexes are true recombination intermediates because (i) strain 7G224 (recE4) was impaired in the formation of the unstable complexes, and (ii) the unstable complexes were rapidly converted to stable complexes in recombination proficient strains, whereas their conversion was delayed in the recombination deficient strain 7G84.Unstable complexes were also formed with Escherichia coli donor DNA, but to a lesser extent. Apparently a limited degree of base-sequence homology is sufficient to initiate recombination.     

Sequence composition effects on the stabilities of triple helix formation by oligonucleotides containing N7-deoxyguanosine.

A nonnatural nucleoside, 7-(2-deoxy-beta-D-erythro-pento-furanosyl)-guanine (d7G), mimics protonated cytosine and specifically binds GC base pairs within a pyrimidine - purine - pyrimidine triple helix. The differences in association constants (KT) determined by quantitative footprint titration experiments at neutral pH reveal dramatic sequence composition effects on the energetics of triple helix formation by oligonucleotides containing d7G. Purine tracts of sequence composition 5'-d(AAAAAGAGAGAGAGA)-3' are bound by oligonucleotide 5'-d(TTTTT7GT7GT7GT7GT7GT)-3' three orders of magnitude less strongly than by 5'-d(TTTTTmCTmCTmCTmCTmCT)-3' (KT = 1.5 x 10(6) M(-1) and KT > or = 3 x 10(9) M(-1) respectively). Conversely, purine tracts of sequence composition 5'-d(AAAAGAAAAGGGGGGA)-3' are bound by oligonucleotide 5'-d(TTTTmCTTTT7G7G7G7G7G7GT)-3' five orders of magnitude more strongly than by 5'-d(TTTTmCTTTTmCmCmCmCmCT)-3' (KT > or = 3 x 10(9) M(-1) and KT < 5 x 10(4) M(-1) respectively). The complementary nature of d7G and mC expands the repertoire of G-rich sequences which may be targeted by triple helix formation.     

Alternating d(G-A) sequences form a parallel-stranded DNA homoduplex.

The oligonucleotides d[(G-A)7G] and d[(G-A)12G] self-associate under physiological conditions (10 mM MgCl2, neutral pH) into a stable double-helical structure (psRR-DNA) in which the two polypurine strands are in a parallel orientation in contrast to the antiparallel disposition of conventional B-DNA. We have characterized psRR-DNA by gel electrophoresis, UV absorption, vacuum UV circular dichroism, monomer-excimer fluorescence of oligonucleotides end-labelled with pyrene, and chemical probing with diethyl pyrocarbonate and dimethyl sulfate. The duplex is stable at pH 4-9, suggesting that the structure is compatible with, but does not require, protonation of the A residues. The data support a model derived from force-field analysis in which the parallel-stranded d(G-A)n helix is right-handed and constituted of alternating, symmetrical Gsyn.Gsyn and Aanti.Aanti base pairs with N1H...O6 and N6H...N7 hydrogen bonds, respectively. This dinucleotide structure may be the source of a negative peak observed at 190 nm in the vacuum UV CD spectrum, a feature previously reported only for left-handed Z-DNA. The related sequence d[(GAAGGA)4G] also forms a parallel-stranded duplex but one that is less stable and probably involves a slightly different secondary structure. We discuss the potential intervention of psRR-DNA in recombination, gene expression and the stabilization of genomic structure.     

6-Oxocytidine a novel protonated C-base analogue for stable triple helix formation.

2'-O-Methyl-3'-O-phosphoramidite building blocks of 6-oxocytidine 6 and its 5-methyl derivative 7, respectively, were synthesized and incorporated via phosphoramidite chemistry in 15 mer oligodeoxynucleotides [d(T72T7), S2; d(T73T7), S3] to obtain potential Py.Pu.Py triplex forming homopyrimidine strands. UV thermal denaturation studies and CD spectroscopy of 1:1 mixtures of these oligomers and a 21 mer target duplex [d(C3A7GA7C3)-d(G3T7CT7G3), D1] with a complementary purine tract showed a nearly pH-independent (6.0-8.0) triple helix formation with melting temperatures of 21-19 degrees C and 18.5-17.5 degrees C, respectively (buffer system: 50 mM sodium cacodylate, 100 mM NaCl, 20 mM MgCl2). In contrast, with the corresponding 15mer deoxy-C-containing oligonucleotide [d(T(7)1T7), S1] triplex formation was observed only below pH 6.6. Specificity for the recognition of Watson-Crick GC-base pairs was observed by pairing the modified C-bases of the 15mers with all other possible Watson-Crick-base compositions in the target duplex [d(C3A7XA7C3)-d(G3T7YT7G3), X = A,C,T; Y = T,G,A, D2-4]. Additionally, the Watson-Crick-pairing of the modified oligomers S2 and S3 was studied.     

TCDD-induced homologous recombination: the role of the Ah receptor versus oxidative DNA damage

The environmental toxicant 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) elicits numerous biological responses including carcinogenicity. The molecular mechanism by which TCDD exerts its tumorigenic effects is unclear, since it does not directly damage DNA. TCDD-initiated toxicity can be mediated by the aryl hydrocarbon receptor (AhR) pathway and/or via increased oxidative stress. DNA damage, including DNA oxidation, can induce DNA double-strand breaks, which can be repaired through homologous recombination. Excessive DNA double-strand breaks may promote aberrant DNA recombination, which can lead to detrimental genetic changes and ultimately to carcinogenesis. TCDD has been shown to induce homologous recombination but the molecular mechanism mediating these events are unknown. To investigate the role of the AhR and oxidative DNA damage in mediating TCDD-induced homologous recombination we used a Chinese hamster ovary (CHO) cell line containing a neo direct repeat recombination substrate (CHO 3-6). CHO 3-6 cells were exposed to TCDD (50, 500 or 1000 pM) in the presence or absence of an AhR antagonists (0.1 microM alpha-naphthoflavone (alpha-NF)) for 6 or 24 h and 2 weeks later homologous recombination frequencies were determined by counting the number of neo expressing, G418-resistant colonies per live cells plated. TCDD-initiated DNA oxidation was determined by measuring the formation of 8-hydroxy-2'-deoxyguanosine via HPLC and electrochemical detection. Exposure to 500 pM TCDD for 24 h significantly increased the frequency of homologous recombination. Southern blot analysis on G418-resistant colonies determined that TCDD induced both conservative gene conversion events and deletion events. DNA oxidation was not increased in cells exposed to TCDD for either 6 or 24 h. However, alpha-naphthoflavone exposure resulted in a significant decrease in TCDD-induced homologous recombination frequency. These results suggest that TCDD-initiated homologous recombination in CHO 3-6 cells is mediated by the AhR and not via increased oxidative stress.     

Quantitative ultrastructural study of nucleolus-organizing regions at some stages of the cell cycle (G0 period, G2 period, mitosis)

The quantitative characteristics of chromosomal nucleolus-organizing regions (NORs) and some other nucleolar components were studied on ultra-thin sections of pig embryo kidney cells (PK cells). It was shown that: 1) nucleoli-per-cell volumes were 3 times smaller in the G0 period than in the G2 period; 2) the number of fibrillar centers (FCs) per cell in the G0 period, the G2 period, and at metaphase was equal to 7, 33.7, and 8, respectively; 3) mean volumes of individual FCs in the G0 period (0.033 +/- 0.005 micron3), G2 period (0.014 +/- 0.001 micron3), and at metaphase (0.025 +/- 0.002 micron3) were significantly different; 4) the total volumes of FCs calculated per haploid set of chromosomes were practically the same in the G0 (0.105 micron3) and G2 (0.107 micron3) periods, but were twice as large as those at metaphase (0.04-0.05 micron3). These data show that partial activation and inactivation of ribosomal genes in interphase PK cells are not accompanied by a considerable change in the total volume of FCs and may be due to the fragmentation and fusion of individual FCs. Complete inactivation of ribosomal genes in mitosis results in a decrease of total volumes of FCs per cell; 5) in G0 and G2 periods the total volume of the dense fibrillar component per nucleolus is practically proportional to the nucleolus volume (r = 0.99); 6) in the G2 period, the nucleolus volume is also proportional to the number of FCs (r = 0.99; 7) the volume of the dense fibrillar component within individual fibrillar complexes is not a constant one.(ABSTRACT TRUNCATED AT 250 WORDS)     

Population genetic characterisation of dominant Cryptosporidium parvum subtype IIaA15G2R1

The subtype IIaA15G2R1 at the 60 kDa glycoprotein (gp60) gene locus is the most dominant Cryptosporidium parvum infecting dairy cattle and humans in industrialised nations. The reasons for its high transmissibility are not clear, and it remains to be determined whether this subtype represents a homogeneous parasite population. In this study, we sequence-characterised 26 IIaA15G2R subtype specimens and 26 non-IIaA15G2R subtype specimens from the United States, Canada, United Kingdom and Spain at seven other known polymorphic loci, including CP47, CP56, DZ-HRGP, MSC6-5, MSC6-7, RPGR and ZPT. Extensive heterogeneity within IIaA15G2R1 and discordance in typing results between gp60 and other genetic markers were observed. Results of inter-locus and intra-ZPT linkage disequilibrium and recombination analyses indicated that the heterogeneity within IIaA15G2R1 and discordance in typing results among genetic loci were largely due to the occurrence of genetic recombination, mostly within the gp60 subtype IIaA15G2R1. Although there was no clear population diversion between IIaA15G2R and non-IIaA15G2R subtypes, results of STRUCTURE and F_ST analyses suggested the presence of at least two subpopulations; subpopulation 1 had an epidemic population structure and was widely distributed, whereas subpopulation 2 had a clonal population structure and consisted of geographically segregated multilocus subtypes. Genetic recombination between epidemic and geographically segregated C. parvum populations appeared to be a driving force in the emergence of a hyper-transmissible IIaA15G2R1 subtype. Genetic recombination was observed even between the zoonotic IIa subtype family and anthroponotic subtype family IIc at CP56, MSC6-7 and ZPT. Thus, the IIaA15G2R1 subtype at gp60 is likely a fitness marker for C. parvum and the wide spread of IIaA15G2R1 subtype around the world is probably independent of the sequence characteristics at other genetic loci.     

人乳头瘤病毒16型E6和E7基因及其突变体转化活性的研究

为筛选出可用于研制HPV治疗性疫苗的HPV16型E6和E7基因突变体,故将HPV16型原型株(德国株)E6和E7基因及其各种突变体分别转染Balb/c3T3细胞,观察转染后的细胞在软琼脂培养中的集落形成能力和在裸鼠体内的成瘤能力.结果表明,单独转染和共转染HPV16野生型E6和E7基因的Balb/c3T3细胞系,在软琼脂中呈集落样生长,并在裸鼠体内成瘤;而转染E6基因突变体mE6(50G)、E7基因的两种突变体mE7-1(24G26G)和mE7-3(24G26G67R)以及共转染mE6和mE7-1的Balb/c3T3细胞,在软琼脂培养中极少形成集落,也不能在裸鼠体内成瘤.提示经结构改造后的HPV16 E6和E7基因已失去了对Balb/c3T3细胞的转化活性,而保留了免疫原性,可用于HPV16相关肿瘤治疗性疫苗的构建.