Dark Reversion of Phytochrome in Sinapis alba L

Phytochrome in Sinapis alba L. (white mustard) seedlings undergoes both decay and reversion after an exposure to red light. This is typical of other crucifers and of dicotyledons in general. In the presence of sodium azide, decay is inhibited, and reversion continues at about the same rate as in buffer alone. The reversion has been demonstrated both in cotyledon plus hypocotyl hook and in hypocotyl hook samples alone and is of the same order of magnitude in both. Contrary conclusions in the literature that there is no reversion in Sinapis are based on indirect measurements and are unjustified.     

Phytochrome E Controls Light-Induced Germination of Arabidopsis

Germination of Arabidopsis seeds is light dependent and under phytochrome control. Previously, phytochromes A and B and at least one additional, unspecified phytochrome were shown to be involved in this process. Here, we used a set of photoreceptor mutants to test whether phytochrome D and/or phytochrome E can control germination of Arabidopsis. The results show that only phytochromes B and E, but not phytochrome D, participate directly in red/far-red light (FR)-reversible germination. Unlike phytochromes B and D, phytochrome E did not inhibit phytochrome A-mediated germination. Surprisingly, phytochrome E was required for germination of Arabidopsis seeds in continuous FR. However, inhibition of hypocotyl elongation by FR, induction of cotyledon unfolding, and induction of agravitropic growth were not affected by loss of phytochrome E. Therefore, phytochrome E is not required per se for phytochrome A-mediated very low fluence responses and the high irradiance response. Immunoblotting revealed that the need of phytochrome E for germination in FR was not caused by altered phytochrome A levels. These results uncover a novel role of phytochrome E in plant development and demonstrate the considerable functional diversification of the closely related phytochromes B, D, and E.     

Phytochrome B Promotes Branching in Arabidopsis by Suppressing Auxin Signaling

Many plants respond to competition signals generated by neighbors by evoking the shade avoidance syndrome, including increased main stem elongation and reduced branching. Vegetation-induced reduction in the red light:far-red light ratio provides a competition signal sensed by phytochromes. Plants deficient in phytochrome B (phyB) exhibit a constitutive shade avoidance syndrome including reduced branching. Because auxin in the polar auxin transport stream (PATS) inhibits axillary bud outgrowth, its role in regulating the phyB branching phenotype was tested. Removing the main shoot PATS auxin source by decapitation or chemically inhibiting the PATS strongly stimulated branching in Arabidopsis (Arabidopsis thaliana) deficient in phyB, but had a modest effect in the wild type. Whereas indole-3-acetic acid (IAA) levels were elevated in young phyB seedlings, there was less IAA in mature stems compared with the wild type. A split plate assay of bud outgrowth kinetics indicated that low auxin levels inhibited phyB buds more than the wild type. Because the auxin response could be a result of either the auxin signaling status or the bud’s ability to export auxin into the main shoot PATS, both parameters were assessed. Main shoots of phyB had less absolute auxin transport capacity compared with the wild type, but equal or greater capacity when based on the relative amounts of native IAA in the stems. Thus, auxin transport capacity was unlikely to restrict branching. Both shoots of young phyB seedlings and mature stem segments showed elevated expression of auxin-responsive genes and expression was further increased by auxin treatment, suggesting that phyB suppresses auxin signaling to promote branching.The development of shoot branches is a multistep process with many potential points of regulation. After the formation of an axillary meristem in the leaf axil, an axillary bud may form through the generation of leaves and other tissues. The axillary bud may grow out to form a branch, or may remain dormant or semidormant for an indefinite period of time (Bennett and Leyser, 2006). In Arabidopsis (Arabidopsis thaliana), the position of the bud in the rosette is a strong determinant of its fate, with upper buds displaying greater outgrowth potential than lower buds. In fact, the varying potential of buds at different positions is maintained even in buds that are activated to form branches, with the upper buds growing out first and most robustly, and lower buds growing out after a time lag and with less vigor (Hempel and Feldman, 1994; Finlayson et al., 2010).The disparate fate of buds at different rosette positions is mediated, at least in part, by the process of correlative inhibition, whereby remote parts of the plant inhibit the outgrowth of the buds (Cline, 1997). Correlative inhibition is typically associated with the bud-inhibiting effects of auxin sourced in the shoot apex and transported basipetally in the polar auxin transport stream (PATS). Auxin in the PATS does not enter the bud and thus must act indirectly; however, the exact mechanism by which auxin inhibits bud outgrowth is not well understood, despite many years of intensive study (Waldie et al., 2010; Domagalska and Leyser, 2011). Evidence supports divergent models by which auxin may regulate branching. One model contends that the PATS modulates a bud outgrowth inhibiting second messenger (Brewer et al., 2009). Another model postulates a mechanism whereby competition between the main shoot and the axillary bud for auxin export in the PATS regulates bud activity (Bennett et al., 2006; Prusinkiewicz et al., 2009; Balla et al., 2011).In addition to intrinsic developmental programming, branching is also modulated by environmental signals, including competition signals generated by neighboring plants. The red light:far-red light ratio (R:FR) is an established competition signal that is modified (reduced) by neighboring plants and sensed by the phytochrome family of photoreceptors. A low R:FR evokes the shade avoidance syndrome with plants displaying, among other phenotypes, enhanced shoot elongation and reduced branching (Smith, 1995; Ballaré, 1999; Franklin and Whitelam, 2005; Casal, 2012). Phytochrome B (phyB) is the major sensor contributing to R:FR responses, and loss of phyB function results in a plant that displays a phenotype similar to constitutive shade avoidance. It should be noted that actual shade avoidance is mediated by additional phytochromes and that the complete absence of functional phyB in the loss-of-function mutant may also result in a phenotype that does not exactly mirror shade avoidance. Loss of phyB function leads to reduced branching and altered expression of genes associated with hormone pathways and bud development in the axillary buds (Kebrom et al., 2006; Finlayson et al., 2010; Kebrom et al., 2010; Su et al., 2011). In Arabidopsis, phyB deficiency differentially affects the outgrowth of buds from specific positions in the rosette and thus demonstrates an important function in the regulation of correlative inhibition (Finlayson et al., 2010; Su et al., 2011), a process known to be influenced by auxin. Many aspects of auxin signaling are dependent on AUXIN RESISTANT1 (AXR1), which participates in activating the Skip-Cullin-F-box auxin signaling module (del Pozo et al., 2002). Reduced auxin signaling resulting from AXR1 deficiency enabled phyB-deficient plants to branch profusely and reduced correlative inhibition, thus establishing auxin signaling downstream of phyB action (Finlayson et al., 2010). Although a link between auxin signaling and phyB regulation of branching was demonstrated, the details of the interaction were not discovered.The relationship between auxin and shade avoidance responses has been investigated in some detail. Auxin signaling was implicated in shade avoidance responses mediated by ARABIDOPSIS THALIANA HOMEOBOX PROTEIN2 in young Arabidopsis seedlings (Steindler et al., 1999). Rapid changes in leaf development resulting from canopy shade were also shown to involve TRANSPORT INHIBITOR RESPONSE1-dependent auxin signaling (Carabelli et al., 2007). A link between auxin abundance and the response to the R:FR was demonstrated in Arabidopsis deficient for the TRP AMINOTRANSFERASE OF ARABIDOPSIS1 (TAA1) auxin biosynthetic enzyme (Tao et al., 2008). Young wild-type seedlings respond to a decreased R:FR by increasing indole-3-acetic acid (IAA) biosynthesis, accumulating IAA, increasing hypocotyl and petiole elongation, and increasing leaf elevation. However, these responses are reduced in plants deficient in TAA1. Subsequent studies confirmed the importance of auxin in responses to the R:FR (Pierik et al., 2009; Kozuka et al., 2010; Keller et al., 2011), and also identified the auxin transporter PIN-FORMED3 as essential for hypocotyl elongation responses in young seedlings (Keuskamp et al., 2010). In addition to the roles of auxin abundance and transport in the process, auxin sensitivity has also been implicated in shade avoidance. Several auxin signaling genes are direct targets of the phytochrome signaling component PHYTOCHROME INTERACTING FACTOR5 (PIF5), and these genes are misregulated in Arabidopsis deficient in either PHYTOCHROME INTERACTING FACTOR4 (PIF4) or PIF5 (Hornitschek et al., 2012; Sun et al., 2013). Auxin-responsive hypocotyl elongation and auxin-induced gene expression were also reduced in young seedlings of the pif4pif5 double mutant (Hornitschek et al., 2012), which show defects in shade avoidance responses (Lorrain et al., 2008).Although some aspects of the regulation of branching are now understood, there are still many gaps in our knowledge of the process, especially as related to the regulation of branching by light signals. Because auxin is known to play a major role in regulating branch development, and because recent studies have implicated auxin in general shade avoidance responses and specifically in the regulation of branching by phyB, the hypothesis that auxin homeostasis, transport, and/or signaling may contribute to the hypobranching phenotype of phyB-deficient plants was generated and tested, using a variety of physiological and molecular approaches.     

Dark Reversion of Phytochrome in Lettuce Seeds Stored in a Water-saturated Atmosphere

Dark reversion of the far red-absorbing form of phytochrome, which does not occur in dry lettuce (Lactuca sativa var. Grand Rapids) seeds, appears to take place in seeds stored in a water-saturated atmosphere. The water content (approximately 70% after 10 days) of such seeds is insufficient to support germination; however the treatment enhances germination in seeds stored for 1 to 5 days, but this enhancement subsequently disappears, and the effect of extended storage (up to 28 days) is inhibiting. The half-time for dark far red-absorbing phytochrome reversion is 7 to 8 days, and at this time it can be completely reversed by exposing the seeds to a flash of red light. Storage of more than 7 to 8 days decreases red light enhancement of germination.     

Effect of Monoclonal Antibodies on the in Vitro PFR Dark Reversion of Pea Phytochrome

Extraction as P_FR and immunoaffinity chromatography yieldeda pea phytochrome sample with polypeptide size of 121 kdalton,the same as in a crude extract which was immediately heatedin SDS. A difference spectrum was almost the same as that observedin etiolated pea epicotyls except that A₆₆₆/A₇₃₀ of 1.20 wassignificantly larger. At 10C dark reversion from P_FR occurred,with the decrease in A₇₂₈ being almost equal to the increasein A₆₆₇. The kinetics could be resolved into three first-ordercomponents, the major, slow component accounting for more than90% of the absorbance changes. In the presence of monoclonalanti-pea phytochrome antibodies mAP-1, 3 or 5, which bind awayfrom the chromophore, and mAP-7, which binds near the chromophore,the rate of the major component was reduced at either one orboth wavelengths. None of these antibodies affected the absorptionspectra of phytochrome. In the presence of mAP-9, which is suggestedto bind near the amino-terminus, the absorption at the red-light-inducedphotostationary state was reduced and the rate of dark reversionwas increased, resembling partially degraded phytochrome of114 kdalton, but with no evidence of proteolysis. ¹ Permanent address: Department of Botany, Faculty of Science,University of Tokyo, Hongo, Tokyo 113, Japan.     

Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development

Plant responses to red and far-red light are mediated by a family of photoreceptors called phytochromes. In Arabidopsis thaliana, there are genes encoding at least five phytochromes, and it is of interest to learn if the different phytochromes have overlapping or distinct functions. To address this question for two of the phytochromes in Arabidopsis, we have compared light responses of the wild type with those of a phyA null mutant, a phyB null mutant, and a phyA phyB double mutant. We have found that both phyA and phyB mutants have a deficiency in germination, the phyA mutant in far-red light and the phyB mutant in the dark. Furthermore, the germination defect caused by the phyA mutation in far- red light could be suppressed by a phyB mutation, suggesting that phytochrome B (PHYB) can have an inhibitory as well as a stimulatory effect on germination. In red light, the phyA phyB double mutant, but neither single mutant, had poorly developed cotyledons, as well as reduced red-light induction of CAB gene expression and potentiation of chlorophyll induction. The phyA mutant was deficient in sensing a flowering response inductive photoperiod, suggesting that PHYA participates in sensing daylength. In contrast, the phyB mutant flowered earlier than the wild type (and the phyA mutant) under all photoperiods tested, but responded to an inductive photoperiod. Thus, PHYA and PHYB appear to have complementary functions in controlling germination, seedling development, and flowering. We discuss the implications of these results for possible mechanisms of PHYA and PHYB signal transduction.     

Blue Light-Induced Phytochrome Increase in Mung Bean Hooks

An “action spectrum” between 400 and 620 nm for the radiation-induced phytochrome increase was obtained with mung bean hooks. A broad band between 410 and 480 nm was found to induce significant increases in phytochrome content. Radiation from 500 to 620 nm failed to promote any significant increase. Red irradiation immediately following far-red treatment showed no reversal. These results and an earlier finding that far-red irradiation promotes phytochrome increase suggest that the photoreceptor for the radiation-induced increase is probably not phytochrome, but could be a related pigment if the phenomenon is due to one photoreceptor. The blue light-induced increase in phytochrome content increases the possibility of the participation of phytochrome in blue light-mediated high irradiance responses of plants.     

Phytochrome B and at Least One Other Phytochrome Mediate the Accelerated Flowering Response of Arabidopsis thaliana L. to Low Red/Far-Red Ratio

We have investigated the involvement of phytochrome B in the early-flowering response of Arabidopsis thaliana L. seedlings to low red:far-red (R/FR) ratio light conditions. The phytochrome B-deficient hy3 (phyB) mutant is early flowering, and in this regard it resembles the shade-avoidance phenotype of its isogenic wild type. Seedlings carrying the hy2 mutation, resulting in a deficiency of phytochrome chromophore and hence of active phytochromes, also flower earlier than wild-type plants. Whereas hy3 or hy2 seedlings show only a slight acceleration of flowering in response to low R/FR ratio, seedlings that are doubly homozygous for both mutations flower earlier than seedlings carrying either phytochrome-related mutation alone. This additive effect clearly indicates the involvement of one or more phytochrome species in addition to phytochrome B in the flowering response as well as indicating the presence of some functional phytochrome B in hy2 seedlings. Seedlings that are homozygous for the hy3 mutation and one of the fca, fwa, or co late-flowering mutations display a pronounced early-flowering response to low R/FR ratio. A similar response to low R/FR ratio is displayed by seedlings doubly homozygous for the hy2 mutation and any one of the late-flowering mutations. Thus, placing the hy3 or hy2 mutations into a late-flowering background has the effect of uncovering a flowering response to low R/FR ratio. Seedlings that are triply homozygous for the hy3, hy2 mutations and a late-flowering mutation flower earlier than the double mutants and do not respond to low R/FR ratio. Thus, the observed flowering responses to low R/FR ratio in phytochrome B-deficient mutants can be attributed to the action of at least one other phytochrome species.     

Different Phototransduction Kinetics of Phytochrome A and Phytochrome B in Arabidopsis thaliana

The kinetics of phototransduction of phytochrome A (phyA) and phytochrome B (phyB) were compared in etiolated Arabidopsis thaliana seedlings. The responses of hypocotyl growth, cotyledon unfolding, and expression of a light-harvesting chlorophyll a/b-binding protein of the photosystem II gene promoter fused to the coding region of β-glucuronidase (used as a reporter enzyme) were mediated by phyA under continuous far-red light (FR) and by phyB under continuous red light (R). The seedlings were exposed hourly either to n min of FR followed by 60 minus n min in darkness or to n min of R, 3 min of FR (to back-convert phyB to its inactive form), and 57 minus n min of darkness. For the three processes investigated here, the kinetics of phototransduction of phyB were faster than that of phyA. For instance, 15 min R h⁻¹ (terminated with a FR pulse) were almost as effective as continuous R, whereas 15 min of FR h⁻¹ caused less than 30% of the effect of continuous FR. This difference is interpreted in terms of divergence of signal transduction pathways downstream from phyA and phyB.     

Phytochrome B affects responsiveness to gibberellins in Arabidopsis.

Plant responses to red and far-red light are mediated by a family of photoreceptors called phytochromes. Arabidopsis thaliana seedlings lacking one of the phytochromes, phyB, have elongated hypocotyls and other tissues, suggesting that they may have an alteration in hormone physiology. We have studied the possibility that phyB mutations affect seedling gibberellin (GA) perception and metabolism by testing the responsiveness of wild-type and phyB seedlings to exogenous GAs. The phyB mutant elongates more than the wild type in response to the same exogenous concentrations of GA3 or GA4, showing that the mutation causes an increase in responsiveness to GAs. Among GAs that we were able to detect, we found no significant difference in endogenous levels between wild-type and phyB mutant seedlings. However, GA4 levels were below our limit of detectability, and the concentration of that active GA could have varied between wild-type and phyB mutant seedlings. These results suggest that, although GAs are required for hypocotyl cell elongation, phyB does not act primarily by changing total seedling GA levels but rather by decreasing seedling responsiveness to GAs.     

Phosphatidic Acid Inhibits Blue Light-Induced Stomatal Opening via Inhibition of Protein Phosphatase 1

Stomata open in response to blue light under a background of red light. The plant hormone abscisic acid (ABA) inhibits blue light-dependent stomatal opening, an effect essential for promoting stomatal closure in the daytime to prevent water loss. However, the mechanisms and molecular targets of this inhibition in the blue light signaling pathway remain unknown. Here, we report that phosphatidic acid (PA), a phospholipid second messenger produced by ABA in guard cells, inhibits protein phosphatase 1 (PP1), a positive regulator of blue light signaling, and PA plays a role in stimulating stomatal closure in Vicia faba. Biochemical analysis revealed that PA directly inhibited the phosphatase activity of the catalytic subunit of V. faba PP1 (PP1c) in vitro. PA inhibited blue light-dependent stomatal opening but did not affect red light- or fusicoccin-induced stomatal opening. PA also inhibited blue light-dependent H⁺ pumping and phosphorylation of the plasma membrane H⁺-ATPase. However, PA did not inhibit the autophosphorylation of phototropins, blue light receptors for stomatal opening. Furthermore, 1-butanol, a selective inhibitor of phospholipase D, which produces PA via hydrolysis of phospholipids, diminished the ABA-induced inhibition of blue light-dependent stomatal opening and H⁺ pumping. We also show that hydrogen peroxide and nitric oxide, which are intermediates in ABA signaling, inhibited the blue light responses of stomata and that 1-butanol diminished these inhibitions. From these results, we conclude that PA inhibits blue light signaling in guard cells by PP1c inhibition, accelerating stomatal closure, and that PP1 is a cross talk point between blue light and ABA signaling pathways in guard cells.Stomatal guard cells in the epidermis of aerial plants regulate gas exchange between leaves and the atmosphere, allowing the uptake of CO₂ for photosynthesis and the loss of water by transpiration. Guard cells integrate a wide variety of stimuli such as light, humidity, temperature, CO₂, and plant hormones to prevent excessive water loss and optimize plant growth under changing environmental conditions (Vavasseur and Raghavendra, 2005; Shimazaki et al., 2007). Among them, blue light and abscisic acid (ABA) represent key factors that promote stomatal opening and closure, respectively (Assmann and Shimazaki, 1999; Hetherington, 2001; Schroeder et al., 2001; Roelfsema and Hedrich, 2005). Blue light induces H⁺ pumping by activation of the plasma membrane H⁺-ATPase, which causes membrane hyperpolarization and drives K⁺ uptake into guard cells via inward-rectifying K⁺ channels (Assmann et al., 1985; Shimazaki et al., 1986; Schroeder et al., 1987). By contrast, ABA activates the anion channels, thereby causing membrane depolarization and promoting K⁺ efflux from guard cells via outward-rectifying K⁺ channels (Schroeder et al., 1987). There is cross talk between the opening and closure systems, and ABA inhibits blue light-induced activation of the H⁺-ATPase (Shimazaki et al., 1986; Goh et al., 1996; Roelfsema et al., 1998). Such inhibition of H⁺-ATPase by ABA is crucial to maintain the plasma membrane depolarization and supports efficient stomatal closure of open stomata. For example, when H⁺-ATPase is kept in the active state, as was found in the open stomata2 mutants, plants lost the stomatal closure response to ABA, which brought about the wilty phenotype even under well-watered conditions (Merlot et al., 2002, 2007). Although the regulation of the stomatal opening system by ABA is important for plant survival, the mechanism by which ABA inhibits the activation of H⁺-ATPase by blue light is largely unknown.Blue light is required for the activation of phototropins, plant-specific Ser/Thr autophosphorylating kinases, and the activated phototropins transmit the signal to the plasma membrane H⁺-ATPase for its activation (Kinoshita et al., 2001; Christie, 2007). Activation of the H⁺-ATPase is caused by the phosphorylation of a Thr residue in the C terminus with subsequent binding of a 14-3-3 protein to the Thr residue (Kinoshita and Shimazaki, 1999; Emi et al., 2001). Since phototropins are Ser/Thr protein kinases, it might be possible that phototropins directly phosphorylate the H⁺-ATPase. However, this has been shown not to be the case. Recently, we demonstrated that protein phosphatase 1 (PP1), a major member of the PPP family of Ser/Thr protein phosphatases, mediates the signaling between phototropins and H⁺-ATPase in guard cells (Takemiya et al., 2006). Therefore, ABA is likely to inhibit the signaling molecule(s), including phototropins, PP1, H⁺-ATPase, and other unidentified components.In guard cells, ABA induces the production of phosphatidic acid (PA), and PA has been implicated in stimulating stomatal closure and inhibiting light-induced stomatal opening (Jacob et al., 1999; Zhang et al., 2004a; Mishra et al., 2006). PA has also been shown to interact with the catalytic subunit of human PP1 (PP1c) and decreases its phosphatase activity (Kishikawa et al., 1999; Jones and Hannun, 2002). It is thus conceivable that PA also functions as an inhibitor of plant PP1c and suppresses the blue light signaling of guard cells.In this study, we investigated the effect of PA on blue light responses of stomata from Vicia faba. We found that PA inhibited the phosphatase activity of PP1c in vitro, suppressed blue light-dependent H⁺ pumping and phosphorylation of H⁺-ATPase, and did not affect the autophosphorylation of phototropins in guard cells.     

Strigolactone-Regulated Hypocotyl Elongation Is Dependent on Cryptochrome and Phytochrome Signaling Pathways in Arabidopsis

Seedling development including hypocotyl elongation is a critical phase in the plant life cycle. Light regula- tion of hypocotyl elongation is primarily mediated through the blue light photoreceptor cryptochrome and red/far-red light photoreceptor phytochrome signaling pathways, comprising regulators including COP1, HY5, and phytochrome- interacting factors （PIFs）. The novel phytohormones, strigolactones, also participate in regulating hypocotyl growth. However, how strigolactone coordinates with light and photoreceptors in the regulation of hypocotyl elongation is largely unclear. Here, we demonstrate that strigolactone inhibition of hypocotyl elongation is dependent on cryp- tochrome and phytochrome signaling pathways. The photoreceptor mutants cry1 cry2, phyA, and phyB are hyposensi- tive to strigolactone analog GR24 under the respective monochromatic light conditions, while cop1 and pifl pif3 pif4 pif5 （pifq） quadruple mutants are hypersensitive to GR24 in darkness. Genetic studies indicate that the enhanced respon- siveness of cop1 to GR24 is dependent on HY5 and MAX2, while that of pifq is independent of HY5. Further studies demonstrate that GR24 constitutively up-regulates HY5 expression in the dark and light, whereas GR24-promoted HY5 protein accumulation is light- and cryptochrome and phytochrome photoreceptor-dependent. These results suggest that the light dependency of strigolactone regulation of hypocotyl elongation is likely mediated through MAX2-dependent promotion of HY5 expression, light-dependent accumulation of HY5, and PIF-regulated components.     

The Light-Response BTB1 and BTB2 Proteins Assemble Nuclear Ubiquitin Ligases That Modify Phytochrome B and D Signaling in Arabidopsis

Members of the Bric-a-Brac/Tramtrack/Broad Complex (BTB) family direct the selective ubiquitylation of proteins following their assembly into Cullin3-based ubiquitin ligases. Here, we describe a subfamily of nucleus-localized BTB proteins encoded by the LIGHT-RESPONSE BTB1 (LRB1) and LRB2 loci in Arabidopsis (Arabidopsis thaliana) that strongly influences photomorphogenesis. Whereas single lrb1 and lrb2 mutants are relatively normal phenotypically, double mutants are markedly hypersensitive to red light, but not to far-red or blue light, and are compromised in multiple photomorphogenic processes, including seed germination, cotyledon opening and expansion, chlorophyll accumulation, shade avoidance, and flowering time. This red light hypersensitivity can be overcome by eliminating phytochrome B (phyB) and phyD, indicating that LRB1/2 act downstream of these two photoreceptor isoforms. Levels of phyB/D proteins but not their messenger RNAs are abnormally high in light-grown lrb1 lrb2 plants, implying that their light-dependent turnover is substantially dampened. Whereas other red light-hypersensitive mutants accumulate phyA protein similar to or higher than the wild type in light, the lrb1 lrb2 mutants accumulate less, suggesting that LRB1/2 also positively regulate phyA levels in a phyB/D-dependent manner. Together, these data show that the BTB ubiquitin ligases assembled with LRB1/2 function redundantly as negative regulators of photomorphogenesis, possibly by influencing the turnover of phyB/D.     

Overexpression of Phytochrome B Induces a Short Hypocotyl Phenotype in Transgenic Arabidopsis

The photoreceptor phytochrome is encoded by a small multigene family in higher plants. phyA encodes the well-characterized etiolated-tissue phytochrome. The product of the phyB gene, which has properties resembling those of "green tissue" phytochrome, is as yet poorly characterized. We have developed a phytochrome B overexpression system for analysis of the structure and function of this protein. Using newly generated polyclonal and monoclonal antibodies that are selective for phytochrome B, we have demonstrated high levels of expression of full-length rice and Arabidopsis phytochrome B under the control of the cauliflower mosaic virus 35S promoter in transgenic Arabidopsis. The overexpressed phytochrome is spectrally active, undergoes red/far-red-light-dependent conformational changes, is synthesized in its inactive red light-absorbing form, and is stable in the light. Overexpression of phytochrome B is tightly correlated with a short hypocotyl phenotype in transgenic seedlings. This phenotype is strictly light dependent, thus providing direct evidence that phytochrome B is a biologically functional photoreceptor. Based on similarities to phenotypes obtained by overexpression of phytochrome A, it appears that phytochromes A and B can control similar responses in the plant.     

Phytochrome B Enhances Photosynthesis at the Expense of Water-Use Efficiency in Arabidopsis

In open places, plants are exposed to higher fluence rates of photosynthetically active radiation and to higher red to far-red ratios than under the shade of neighbor plants. High fluence rates are known to increase stomata density. Here we show that high, compared to low, red to far-red ratios also increase stomata density in Arabidopsis (Arabidopsis thaliana). High red to far-red ratios increase the proportion of phytochrome B (phyB) in its active form and the phyB mutant exhibited a constitutively low stomata density. phyB increased the stomata index (the ratio between stomata and epidermal cells number) and the level of anphistomy (by increasing stomata density more intensively in the adaxial than in the abaxial face). phyB promoted the expression of FAMA and TOO MANY MOUTHS genes involved in the regulation of stomata development in young leaves. Increased stomata density resulted in increased transpiration per unit leaf area. However, phyB promoted photosynthesis rates only at high fluence rates of photosynthetically active radiation. In accordance to these observations, phyB reduced long-term water-use efficiency estimated by the analysis of isotopic discrimination against ¹³CO₂. We propose a model where active phyB promotes stomata differentiation in open places, allowing plants to take advantage of the higher irradiances at the expense of a reduction of water-use efficiency, which is compensated by a reduced leaf area.Photosynthesis, transpiration, and transpiration efficiency, the ratio of carbon fixation to water loss, are key physiological traits considered by plant breeders when selecting productive and water-use efficient plants (Rebetzke et al., 2002; Richards, 2006; Passioura, 2007). Opening of the stomata allows the uptake of CO₂ necessary for photosynthesis but it simultaneously increases the loss of water and the potential deterioration of the water status. Plants are finely tuned to efficiently face this dilemma. Under low levels of photosynthetically active radiation (PAR), stomata open just enough to prevent the limitation of photosynthesis by CO₂ influx and the photochemical phase of photosynthesis is the limiting step. If PAR increases, allowing higher rates of photochemical reactions, which leads to more ATP and NADPH, stomatal conductance also increases to allow sufficient CO₂ to use these products in the Calvin cycle (Donahue et al., 1997; Yu et al., 2004). If instead of following this response coordinated to photosynthetic rates, stomata opened maximally in response to low PAR, more CO₂ than needed would be allowed to reach the chloroplast at the expense of unnecessary water loss.Canopy shade light is characterized not only by reduced PAR levels but also by a reduced proportion of red light (R) compared to far-red light (FR) caused by the selective absorption of visible light by photosynthetic pigments and the reflection and transmission of FR (Holmes and Smith, 1977a). This low R/FR ratio compared to unfiltered sunlight is perceived by phytochromes (Smith, 1982; Ballaré et al., 1987; Pigliucci and Schmitt, 1999), mainly phytochrome B (phyB; Yanovsky et al., 1995). In Arabidopsis (Arabidopsis thaliana), the high R/FR signals perceived by phyB decrease the length of the stem and petioles, cause a more prostrate position of the leaves, and promote branching and delay flowering, among other responses (Reed et al., 1993; Franklin and Whitelam, 2005).Transgenic plants of potato (Solanum tuberosum) expressing the PHYB gene of Arabidopsis show higher stomatal conductance, transpiration rates, and photosynthesis rates per unit leaf area than the wild type (Thiele et al., 1999; Boccalandro et al., 2003; Schittenhelm et al., 2004). Stomata density is unaffected, indicating that phyB enhances the aperture of the stomatal pore in these transgenic plants. Stomatal conductance is higher in Fuchsia magellanica plants exposed to R than to FR pulses at the end of the photoperiod (Aphalo et al., 1991). However, there are no general effects of R/FR treatments on the aperture of the stomatal pore. The stomata of Commelina communis (Roth-Bejerano, 1981) and of the orchid of the genus Paphiopedilum (Talbott et al., 2002) open in response to R and this effect is reversed by FR, indicating a control by phytochrome. Nevertheless, this FR reversal of the effect of R is absent in wild-type Arabidopsis (Talbott et al., 2003). In Phaseolus vulgaris, FR accelerates stomatal movements during dark to light (opening) and light to dark (closing) transitions and this effect is R reversible, but phytochrome status has no effects under constant conditions of light or darkness (Holmes and Klein, 1985). In the latter species, prolonged FR added to a white-light background promotes stomatal conductance but this effect cannot be ascribed to phytochrome (Holmes et al., 1986).In addition to this rapid adjustment of the CO₂ and water vapor fluxes to daily fluctuations in light levels via the regulation of the stomatal pore aperture, plants acclimate to the prevailing PAR conditions by changing stomatal density (number of stomata per unit area) and stomatal index (the ratio between the number of stomata in a given area and the total number of stomata and other epidermal cells in that same area). Stomatal density and stomatal index are higher in plants grown in full sunlight at high levels of PAR than in plants grown in shade (Willmer and Fricker, 1996; Lake et al., 2001; Thomas et al., 2004; Casson and Gray, 2008). Mature leaves sense the environment (light intensity and CO₂) and produce a systemic signal that regulates stomatal density and index in young leaves (Coupe et al., 2006). A change in CO₂ concentrations or PAR levels affects photosynthesis and therefore it was suggested that a metabolic compound associated to this process (i.e. a sugar) may regulate stomatal development (Coupe et al., 2006). However, there is no correlation between photosynthetic rate and stomatal index in poplar (Populus spp.; Miyazawa et al., 2006) and transgenic anti-small subunit of Rubisco tobacco (Nicotiana tabacum) plants, show reduced photosynthesis and normal responses of stomatal density and stomatal index to PAR, suggesting that other photoreceptors could be involved in this regulation (Baroli et al., 2008).Here we demonstrate that high, compared to low, R/FR ratios perceived by phyB increase stomata density, stomata index, and amphistomy in the leaves of Arabidopsis. This behavior results in an enhanced photosynthetic rate at high PAR at the expense of reduced water-use efficiency.