Herbicide effects on the growth and nodulation potential ofRhizobium trifolii withTrifolium subterraneum L.

A study was made of the effect of the herbicides 2,4-D, amitrole, atrazine, chlorsulfuron, diclofop-methyl, diquat, glyphosate, paraquat and trifluralin on the nodulation of sub-clover (Trifolium subterraneum L. ‘Clare’), the growth ofR. trifolii TA1 in liquid nutrient medium and the ability of herbicide-treated inoculum to successfully nodulate sub-clover plants. As concentrations of amitrole, diclofop-methyl and glyphosate in the rooting environment increased from 0 to 20 mg ai L⁻¹, nodulation decreased linearly. The other herbicides at these concentrations caused more severe decreases in nodulation. Growth ofR. trifolii TA1 in nutrient broth was significantly retarded by all concentrations of diquat, 2 mg ai L⁻¹ of paraquat, 10 mg ai L⁻¹ of glyphosate and 2 mg ai L⁻¹ of chlorsulfuron. Other herbicides did not suppress rhizobial growth. Inoculation with TA1 that had been grown in the presence of amitrole, atrazine or glyphosate and then washed free of the herbicide decreased nodulation of sub-clover, indicating that these herbicides may physiologically influence the nodulating potential of certain strains of Rhizobium. The remaining herbicides showed no indications of this effect.     

nodT,a positively-acting cultivar specificity determinant controlling nodulation of Trifolium subterraneum by Rhizobium leguminosarum biovar trifolii

Rhizobium leguminosarum biovar trifolii strain TA1 nodulates a range of Trifolium plants including red, white and subterranean clovers. Nitrogen-fixing nodules are promptly initiated on the tap roots of these plants at the site of inoculation. In contrast to these associations, strain TA1 has a Nod^- phenotype on a particular cultivar of subterranean clover called Woogenellup (A.H. Gibson, Aust J Agric Sci 19: (1968) 907–918) where it induces rare, poorly developed, slow-to-appear and ineffective lateral root nodules. By comparing the nodulation gene region of strain TA1 with that of another R. leguminosarum bv. trifolii strain ANU843, which is capable of efficiently nodulating cv. Woogenellup, we have shown that the nodT gene (B.P. Surin et al., Mol Microbiol 4: (1990) 245–252) is essential for nodulation on cv. Woogenellup. The nodT gene is naturally absent in strain TA1. A cosmid clone spanning the entire nodulation gene region of strain TA1 was capable of conferring nodulation ability to R.l. bv. trifolii strains deleted for nodulation genes, but only on cultivars of subterranean clovers nodulated by strain TA1. This shows that cultivar recognition events are, in part, determined by genes in the nodulation region of strain TA1. Complementation studies also indicated that strain TA1 contains negatively-acting genes located on the Sym plasmid and elsewhere, which specifically block nodulation of cv. Woogenellup.     

Competition between a native isolate of Rhizobium leguminosarum bv trifolii and two commercial inoculant strains for nodulation of clover

Field experiments were conducted to determine the influence of six commercial herbicides and of hand-hoeing on symbiotic parameters and grain yield of lentil (Lens culinaris Med.). The herbicides were sprayed at the pre-emergence stage. Number of nodules, nodule dry weight and nitrogenase activity were found to decrease with the use of Oxyfluorfen, Linuron, Metribuzin and Oxadiazon, whereas the effects of Terbutryn and Methabenzthiazuron were similar to that of hand-hoeing. Any harmful effect of herbicides on symbiotic parameters was less when seeds were inoculated with Rhizobium leguminosarum.     

Plasmid-mediated control of nodulation in Rhizobium trifolii

The nodulation ability was effectively eliminated from different Rhizobium trifolii strains incubated at elevated temperature (urkowski and Lorkiewicz, 1978). Non-nodulating (Nod^-) mutants were stable and no reversion of Nod^- to Nod⁺ phenotype was observed. Strains R. trifolii 24 and T12 which showed a high percentage of elimination of nodulation ability were examined in detail. Two plasmids were detected in strain 24 using neutral and alkaline sucrose gradient centrifugation of plasmid preparations. Molecular weights of the plasmids pWZ1 and pWZ2 were 460 Mdal and 190 Mdal, respectively. Rhizobium lysates labeled with ³H-thymidine and ultracentrifuged in caesium chloride — ethidium bromide gradients demonstrated a 40% reduction of the plasmid DNA content in R. trifolii 24 Nod^- mutants in comparison with the nodulating wild type strain 24. It was found further that non-nodulation of mutants 24 Nod^- was due to the absence of plasmid pWZ2. Sucrose gradient data also demonstrated that strain T12 contained two plasmids with molecular weights corresponding to those of pWZ1 and pWZ2, respectively. In Nod^- mutant clones derived from strain T12, pWZ2 plasmid was missing.Non Standard Abbreviations CCC covalently closed circular - OC open cirucular - Sarkosyl sodium N-lauroylsarcosinate     

The Infection of Trifolium subterraneum Root Hairs by Rhizobium trifolii

Both host cultivar and Rhizobium strain influence the numberof infected root hairs of Trifolium subl-errctneum, seedlings;Yarloop had fewer infections than Cranmore, Mount Barker, orTallarook and Rhizobium trifolii strain 5 infected fewer hairsthan strain TA1. Hybrid lines bred for sparse or abundant nodulationhad similar numbers of infected hairs, but. as in the cultivars,these always greatly exceeded the number of nodules formed.More infection threads aborted early during growth in the roothairs of Cranmore than in other hosts and early abortion wasmore common with strain 5 than strain TA1 In all hosts and with both Rhizobium strains, infection beganon day 3 and was initially restricted to one or two zones alongthe root with later infections extending these zones or initiatingnew ones. The exponential rate of infection (least for Yarloop)slows sharply when nodules appear. Early nodules and lateral roots formed at different places indifferent hosts, and in most cultivars and hybrid lines nodulesand laterals occurred in mutually exclusive zones. Primordiaarising above the first nodule failed to develop.     

Interstrain Competition between Representatives of Indigenous Serotypes of Rhizobium trifolii

The symbiotic characteristics of Rhizobium trifolii strains 1-01 and 2-01 were evaluated both individually and in various combinations on two cultivars (Mt. Barker and Woogenellup) of subterranean clover (Trifolium subterraneum L.). Nodules were observed on day 8 independent of cultivar or strain. Cultivar differences were measured in nodulating efficiency by 1-01 since 54% of the primary nodules were formed on cv. Mt. Barker and only 15% were formed on cv. Woogenellup in the zone above, or 1 cm below, the root tip location at the time of inoculation. The percentage of nodules formed in this zone by 2-01 was similar on both cultivars (31 to 32%). When mixtures of strains 1-01 and 2-01 (230:1 and 1:20) were used to inoculate plants, >90% of the nodules on both cultivars were occupied by the more abundant strain in the inoculum regardless of sampling date (4 or 8 weeks). In contrast, large percentages of nodules on 4-week-old plants of both cultivars exposed to a 5:1 inoculum mixture were doubly occupied (64 and 74%). By week 8 these values had decreased significantly (P ≤ 0.01) and were accompanied by large increases in the percentage of nodules occupied by either strain 1-01 alone (1 to 65%) on cv. Mt. Barker or 2-01 alone (4 to 49%) on cv. Woogenellup. The superior (cv. Mt. Barker) and inferior (cv. Woogenellup) symbiotic performance of plants inoculated with the 5:1 mixture correlated more closely with the 8-week than the 4-week nodule occupancy data. Primary nodule occupancy by 1-01 and 2-01 was significantly influenced by changes in the inoculum ratios of 1-01/2-01 from 5.7:1 to 0.67:1 on cv. Mt. Barker and from 1.9:1 to 0.67:1 on cv. Woogenellup. Despite evidence for extensive proliferation of the inoculant strains on the rhizoplanes, no evidence was obtained for either interstrain antagonism or selective proliferation as a valid reason to explain the outcome of primary nodulation.     

Infection and nodulation of clover by nonmotile Rhizobium trifolii.

Nonmotile mutants of Rhizobium trifolii were isolated to determine whether bacterial motility is required for the infection and nodulation of clover. The nonmotile mutants were screened for their ability to infect and nodulate clover seedlings in Fahraeus glass slide assemblies, plastic growth pouches, and vermiculite-sand-filled clay pots. In each system, the nonmotile mutants were able to infect and nodulate clover.     

Competition studies withRhizobium trifolii in laboratory experiments

Summary Competition studies were carried out in soil cores by comparing the nodule forming ability of antibiotic resistance marked strains, inoculated at three inoculum levels onTrifolium repens versus an effective indigenous Rhizobium population of 1.5×10⁵/gm. It was seen that the indigenous marked isolate G1067 formed a high proportion of nodules sampled (>90%) at all three inoculum levels (10⁵, 10⁷ and 10⁹ cells/seed) wherein the introduced foreign strain G1032 formed >50% of the nodules at the highest inoculum level.In a test tube experiment, competition for nodule sites was examined by inoculating mixtures of twoR. trifolii strains at different input levels on two cultivars ofTrifolium repens var. Huia and Titan. It was seen that G1032 was less competitive than G1006 and G1067 on cv. Huia but was more competitive on cv. Titan than the other two strains.     

Molecular mechanism for loss of nodulation properties of Rhizobium trifolii.

Of 18 Rhizobium trifolii strains tested, 12 showed a high frequency of loss of nodulation ability after incubation in cultures at elevated temperatures. A correlation between loss of nodulation ability and loss of a large plasmid was demonstrated for R. trifolii. In some nonnodulating (Nod-) mutants, deletions occurred instead of total elimination of the plasmid molecule. The maximum curing effect was observed in bacteria incubated at 35 degrees C. After 4 or more days of incubation at this temperature, the viability of bacteria decreased markedly, and the number of nonnodulating mutants increased significantly. At the elevated temperature DNA synthesis was stopped completely after 2 h, whereas protein synthesis proceeded for a few days. Microscopic observations showed that during the first 3 days of incubation at the elevated temperature, the bacterial cells increased markedly in size. These large irregular cells then divided and produced Nod- clones. Nonnodulating clones did not result from the selection of temperature-resistant mutants. The presence of P-group plasmids in Rhizobium strains strongly inhibited the loss of nodulation ability during incubation at 35 degrees C. The observed phenomenon did not result from integrative suppression. It is possible that a product(s) of the genes of R-plasmids acts as a stabilizing agent on the replication process of the indigenous Rhizobium plasmids.     

Interference between Rhizobium meliloti and Rhizobium trifolii nodulation genes: genetic basis of R. meliloti dominance.

Transfer of an IncP plasmid carrying the Rhizobium meliloti nodFE, nodG, and nodH genes to Rhizobium trifolii enabled R. trifolii to nodulate alfalfa (Medicago sativa), the normal host of R. meliloti. Using transposon Tn5-linked mutations and in vitro-constructed deletions of the R. meliloti nodFE, nodG, and nodH genes, we showed that R. meliloti nodH was required for R. trifolii to elicit both root hair curling and nodule initiation on alfalfa and that nodH, nodFE, and nodG were required for R. trifolii to elicit infection threads in alfalfa root hairs. Interestingly, the transfer of the R. meliloti nodFE, nodG, and nodH genes to R. trifolii prevented R. trifolii from infecting and nodulating its normal host, white clover (Trifolium repens). Experiments with the mutated R. meliloti nodH, nodF, nodE, and nodG genes demonstrated that nodH, nodF, nodE, and possibly nodG have an additive effect in blocking infection and nodulation of clover.     

Identification and mobilization by cointegrate formation of a nodulation plasmid in Rhizobium trifolii.

A nodulation plasmid, pRtr-514a, of molecular size 180 megadaltons (Mdal) was identified in Rhizobium trifolii strain NZP514. This plasmid was absent in both spontaneous and heat-cured Nod- derivatives of NZP514, and these strains were unable to induce root hair curling. The ability to nodulate clover was transferred from the wild-type strain to a Nod- derivatives, PN104, with the broad-host-range plasmid R68.45 (39 megadaltons) at a cotransfer frequency of about 4 X 10(-3). Most of the Nod+ transconjugants were resistant to kanamycin, tetracycline, and carbenicillin and had received a plasmid approximately 36 or 70 Mdal larger than pRtr514a but did not contain a plasmid of the size of R68.45, indicating that pRtr-514a was mobilized as a cointegrate plasmid containing either one or possibly two copies of R68.45. Use of these cointegrate-containing strains as donors in further crosses with the Nod- derivative strain PN118 resulted in high-frequency transfer of Nod+ (10(-3) to 10(-4), with cotransfer frequencies with kanamycin of up to 100%. Introduction of R68.45 into a derivative of NZP514 containing the broad-host-range plasmid pJP4 (52 Mdal) resulted in a high frequency of transconjugants carrying a cointegrate plasmid composed of pRtr-514a and pJP4. When used as donors to Nod- derivatives, such strains cotransferred Nod+ with kanamycin plus mercury at a frequency of 67%. The identification of stable cointegrates between pRtr-514a and the broad-host-range plasmids R68.45 and pJP4 should enable several genetic manipulations to be carried out with this nodulation plasmid, including the transfer of the plasmid to most gram-negative bacterial genera.     

Expression of Rhizobium trifolii early nodulation genes on maize and rice plants.

An IncQ multicopy vector (pKT230) and an IncP1 low-copy-number vector (pRK290), both carrying Rhizobium trifolii root hair curling (Hac) genes, were transferred to a Sym plasmid-cured derivative of R. trifolii ANU843. The resulting transconjugants were used to inoculate the monocotyledonous plants sorghum, maize, rice, and wheat. Transconjugants carrying the Hac genes on the multicopy vector caused a root hair curling response on maize and rice plants 14 days after inoculation.     

Organisation of nodulation and nitrogen fixation genes on a Rhizobium trifolii symbiotic plasmid

A Rhizobium trifolii symbiotic plasmid specific gene library was constructed and the physical organisation of regions homologous to nifHDK, nifA and nod genes was determined. These symbiotic gene regions were localised to u 25 kb region on the sym-plasmid, pPN1. In addition four copies of a reiterated sequence were identified on this plasmid, with one copy adjacent to nifH. No rearrangement of these reiterated sequences was observed between R. trifolii bacterial and bacteroid DNA. Analysis of a deletion derivative of pPN1 showed that these sequences were spread over a 110 kb region to the left of nifA.     

Host-specific nodulation is encoded on a 14kb DNA fragment in Rhizobium trifolii

Summary The Rhizobium trifolii genes necessary for nodule induction and development have been isolated on a 14.0kb fragment of symbiotic (Sym) plasmid DNA. When cloned into a broad-host-range plasmid vector, these sequences confer a clover nodulation phenotype on a derivative of R. trifolii which has been cured of its endogenous Sym plasmid. Furthermore, these sequences encode both host specificity and nodulation functions since they confer the ability to recognize and nodulate clover plants on Agrobacterium and a fast-growing cowpea Rhizobium. This indicates that the bacterial genes essential for the initial, highly-specific interaction with plants are closely linked.     

Competition studies with Rhizobium trifolii in a field experiment

M c L oughlin , T.J. B ordeleau L.M. & D unican , L.K. 1984. Competition studies with Rhizobium trifolii in a field experiment. Journal of Applied Bacteriology 56 , 131–135.
Competition studies were carried out in a field experiment by comparing the ability of antibiotic marked Rhizobium strains inoculated at three inoculum levels in forming nodules against an effective indigenous Rhizobium population of 1.5 times 10⁵/g. Three inoculum strains were assessed. It was seen that by increasing the level of inoculum there was a corresponding increase in the number of nodules formed by the introduced strains. G1067 formed a high proportion (85%) at the highest level, whereas the other two inoculum strains occupied less than 50% of the nodules at the same level. Persistence of the inoculum strain was measured into the second season; G1032 could not be detected, G1006 (another 'foreign' strain) formed 43% and G1067 formed 97% of the nodules sampled. The indigenous Rhizobium population isolated from nodules was shown to be heterogenous, and 15 different intrinsic antibiotic resistance patterns were found. Fifty per cent of the isolates fell in the same group which showed a similar pattern to that of the inoculum strain G1067.