Direct X-Ray Microtomography Observation Confirms the Induction of Embolism upon Xylem Cutting under Tension

Direct visualization shows enhanced embolism of xylem samples when they are collected under tension.Embolism resistance is a critically important trait for evaluating the ability of plants to survive and recover from drought periods and predicting future drought-induced forest decline (Choat et al., 2012). However, recent publications have provided evidence that some measurement techniques used to evaluate the hydraulic function and vulnerability to cavitation of plant organs may be prone to artifacts (Sperry et al., 2012; Cochard et al., 2013; Torres-Ruiz et al., 2014; Trifilò et al., 2014). The discovery of these artifacts has raised questions regarding the reliability of some previously published plant hydraulics data, in particular data relating to the refilling of embolized xylem conduits while the xylem is under tension. In this context, Wheeler et al. (2013) reported that sampling plant organs by cutting while the xylem is under tension can induce artificial increases in the degree of embolism at the moment of sample excision, even when cuts are made under water. The methodology applied by Wheeler et al. (2013), however, did not allow the visualization of embolized or functional vessels, and native embolism levels could not be determined in intact plants before any cutting was done.Whereas Scoffoni and Sack (2014) showed that the artifact described by Wheeler et al. (2013) has no impact on leaf xylem hydraulic conductance, there is some uncertainty about its importance in stems or shoots (Trifilò et al., 2014; Venturas et al., 2014). The results of Wheeler et al. (2013) indicate that more embolism could be induced by cutting samples that are under midrange xylem tension (e.g. at midday or under conditions of water stress). Potential overestimation of embolism due to changes in the xylem tension during the day has important implications for our understanding of plant water relations, since they could erroneously suggest that daily patterns of embolism formation and repair are routine in many woody plant species. Debate continues regarding the implications of a cutting artifact for the existence of a mechanism that allows plants to repair embolism while the xylem is under tension, so-called novel refilling (Salleo et al., 1996; Cochard and Delzon, 2013; Sperry, 2013; Delzon and Cochard, 2014). To avoid the excision artifact, Wheeler et al. (2013) recommended the relaxation of the xylem tension prior to excision by rehydrating plant tissue for anywhere between 2 min and 2 h. However, recent results from Trifilò et al. (2014) indicated that the rehydration procedures used by Wheeler et al. (2013) for relaxing the samples might favor xylem refilling and embolism repair (rehydration artifact), suggesting that the artifact resides in the relaxing procedure rather than in the cutting procedure. In light of these data, the assessment of the artifact described by Wheeler et al. (2013) using noninvasive techniques on intact plants, such as direct observation using x-ray microtomography (micro-CT; McElrone et al., 2013; Cochard et al., 2014) or magnetic resonance imaging (Choat et al., 2010; Zwieniecki et al., 2013), is useful to visually assess changes in embolism after cutting stems.     

Noninvasive Measurement of Vulnerability to Drought-Induced Embolism by X-Ray Microtomography

Hydraulic failure induced by xylem embolism is one of the primary mechanisms of plant dieback during drought. However, many of the methods used to evaluate the vulnerability of different species to drought-induced embolism are indirect and invasive, increasing the possibility that measurement artifacts may occur. Here, we utilize x-ray computed microtomography (microCT) to directly visualize embolism formation in the xylem of living, intact plants with contrasting wood anatomy (Quercus robur, Populus tremula × Populus alba, and Pinus pinaster). These observations were compared with widely used centrifuge techniques that require destructive sampling. MicroCT imaging provided detailed spatial information regarding the dimensions and functional status of xylem conduits during dehydration. Vulnerability curves based on microCT observations of intact plants closely matched curves based on the centrifuge technique for species with short vessels (P. tremula × P. alba) or tracheids (P. pinaster). For ring porous Q. robur, the centrifuge technique significantly overestimated vulnerability to embolism, indicating that caution should be used when applying this technique to species with long vessels. These findings confirm that microCT can be used to assess the vulnerability to embolism on intact plants by direct visualization.Theory describing the physiological mechanism that allows plants to extract water from the soil and transport it many tens of meters in height has often been the subject of intense debate (Tyree, 2003). Plants have evolved a water-transport system that relies on water sustaining a tensile force; as a result, xylem sap is at negative absolute pressures (Dixon and Joly, 1895; Melcher et al., 1998; Wei et al., 1999). However, this transport mechanism comes with its own set of problems. Most notably, water under tension is prone to cavitation, which results in the formation of gas bubbles (emboli) that block xylem conduits. Embolism reduces the capacity of the xylem tissue to deliver water to the canopy, where it is required to maintain adequate levels of cellular hydration (Tyree and Sperry, 1989). The probability of embolism occurring in the xylem increases during drought, with increasing tension in the xylem sap. During prolonged and severe droughts, xylem embolism can reach lethal levels, causing branch dieback and, ultimately, plant death (Davis et al., 2002; Brodribb and Cochard, 2009; Hoffmann et al., 2011; Choat, 2013; Urli et al., 2013). Water stress-induced embolism is now recognized as one of the principal causes of plant mortality in response to extreme drought events (Anderegg, 2015). In the face of increasingly severe droughts expected with rising global temperatures, hydraulic failure due to embolism has the potential to cause widespread dieback of trees across all major forest biomes (Choat et al., 2012).The majority of techniques used to estimate cavitation resistance are indirect and/or invasive, increasing the possibility of artifacts occurring during measurement (Cochard et al., 2013). Artifacts relating to invasive techniques are particularly relevant in this case, since xylem sap under tension is in a metastable state and may easily vaporize as a result of disturbance. Noninvasive imaging techniques offer the potential to make direct observations of xylem function in intact plants at high resolution and in real time. Noninvasive techniques include magnetic resonance imaging (MRI; Holbrook et al., 2001; Kaufmann et al., 2009; Choat et al., 2010) and, more recently, x-ray computed microtomography (microCT; Brodersen et al., 2010; Charra-Vaskou et al., 2012; McElrone et al., 2012). MicroCT provides superior spatial resolution to MRI, with resolutions below 2 μm attainable for a plant stem of 4 to 5 mm in diameter. This allows for detailed analysis of embolism formation and repair in the xylem, including spatial patterns of embolism spread between conduits (Brodersen et al., 2013; Dalla-Salda et al., 2014).However, noninvasive imaging techniques have seldom been used to validate indirect or invasive techniques used to estimate cavitation resistance. At this stage, only a handful of studies have utilized imaging technology to measure cavitation resistance in trees (Torres-Ruiz et al., 2014; Cochard et al., 2015), and these studies employed a destructive mode of the technique in which small branches were cut off the plant before scanning took place. Thus far, noninvasive imaging on intact plants has only been used to measure cavitation resistance in two species, grapevine (Vitis vinifera; Choat et al., 2010; Brodersen et al., 2013) and Sequoia sempervirens (Choat et al., 2015). Further measurement of cavitation resistance using noninvasive imaging on intact plants across a range of species, therefore, is a high priority.These comparisons are particularly important because of the current debate surrounding the invasive techniques (Cochard et al., 2013). Specifically, evidence from a variety of experiments suggests that centrifuge and air injection techniques underestimate cavitation resistance in species with long xylem vessels (Choat et al., 2010; Cochard et al., 2010; Ennajeh et al., 2011; Martin-StPaul et al., 2014; Torres-Ruiz et al., 2014; Wang et al., 2014). This artifact occurs when samples placed into centrifuge rotors or air injection collars have a large proportion of vessels that are cut open at both ends of the segment. A number of studies have disputed this open-vessel hypothesis and suggested that some versions of the centrifuge and air injection techniques provide reliable estimates of cavitation resistance (Jacobsen and Pratt, 2012; Sperry et al., 2012; Tobin et al., 2013). Because there will always be uncertainties associated with indirect measurements, noninvasive imaging using intact plants provides the best option for resolving these methodological issues.In this study, synchrotron-based microCT was utilized to investigate the formation of drought-induced embolism in the xylem of intact, potted plants. Three species were selected to provide a range of contrasting xylem structures: Quercus robur (ring porous), Populus tremula × Populus alba (diffuse porous), and Pinus pinaster (tracheid bearing). Visualizations of xylem embolism in the stems of these species during a sequence of natural dehydration were used to construct embolism vulnerability curves. We hypothesized that (1) vulnerability curves based on microCT observations would match vulnerability curves based on the centrifuge technique for species with short vessels (P. tremula × P. alba) or tracheid-based xylem (P. pinaster) and (2) the centrifuge technique would overestimate vulnerability to embolism in the long-vesseled species (Q. robur) due to the open-vessel artifact.     

Freeze-Thaw Stress: Effects of Temperature on Hydraulic Conductivity and Ultrasonic Activity in Ten Woody Angiosperms

Freeze-thaw events can affect plant hydraulics by inducing embolism. This study analyzed the effect of temperature during the freezing process on hydraulic conductivity and ultrasonic emissions (UE). Stems of 10 angiosperms were dehydrated to a water potential at 12% percentage loss of hydraulic conductivity (PLC) and exposed to freeze-thaw cycles. The minimal temperature of the frost cycle correlated positively with induced PLC, whereby species with wider conduits (hydraulic diameter) showed higher freeze-thaw-induced PLC. Ultrasonic activity started with the onset of freezing and increased with decreasing subzero temperatures, whereas no UE were recorded during thawing. The temperature at which 50% of UE were reached varied between −9.1°C and −31.0°C across species. These findings indicate that temperatures during freezing are of relevance for bubble formation and air seeding. We suggest that species-specific cavitation thresholds are reached during freezing due to the temperature-dependent decrease of water potential in the ice, while bubble expansion and the resulting PLC occur during thawing. UE analysis can be used to monitor the cavitation process and estimate freeze-thaw-induced PLC.Xylem embolism is a limiting factor for plant survival and distribution (Choat et al., 2012; Charrier et al., 2013). Two major factors can induce embolism in the xylem of plants: drought and freeze stress. Freeze-thaw-induced embolism is caused by bubbles formed during freezing that then expand on thawing (Lemoine et al., 1999; Hacke and Sperry, 2001; Cruiziat et al., 2002; Tyree and Zimmermann, 2002). As wider conduits contain more gas and form larger bubbles, which expand at less negative tension, conduit diameter and xylem sap tension are critical for the formation of freeze-thaw-induced embolism (Davis et al., 1999; Pittermann and Sperry, 2003). Accordingly, Mayr and Sperry (2010) observed a loss of conductivity only when samples were under critical tension during thawing. Under drought stress, tension in the xylem sap increases the sensitivity to embolism generated by successive freeze-thaw cycles (Mayr et al., 2003, 2007).Ultrasonic emissions (UE) analysis can be used to detect cavitation events in wood. It is unclear how well related UE are to cavitation events, as they are extracted from continuous acoustic emissions and depend on set definitions. However, UE analysis has been proven effective for monitoring drought-induced embolism in the laboratory (Pena and Grace, 1986; Salleo and Lo Gullo, 1986; Borghetti et al., 1993; Salleo et al., 2000) as well as in field experiments (Ikeda and Ohtsu, 1992; Jackson et al., 1995; Jackson and Grace, 1996; Hölttä et al., 2005; Ogaya and Penuelas, 2007). In a cavitating conduit, signals are probably produced by the disruption of the water column and subsequent tension relaxation of cell walls.UE have also been detected during freezing events, but the origin of these signals was less clear. In some cases, UE were observed during thawing, which are thus probably related to embolism formation according to the classic thaw-expansion hypothesis (Mayr and Sperry, 2010); however, all species studied have produced UE on freezing, which cannot yet be explained (Raschi et al., 1989; Kikuta and Richter, 2003; Mayr et al., 2007; Mayr and Sperry, 2010; Mayr and Zublasing, 2010). The low solubility of gases in ice prompted the idea that air bubbles expulsed from the ice structure produce UE near the ice-liquid interface (Sevanto et al., 2012). As the water potential of ice is strongly temperature dependent, the minimum temperature during freezing might be a relevant factor. Numerous studies have analyzed UE patterns during freeze-thaw cycles in conifers (Mayr et al., 2007; Mayr and Sperry, 2010; Mayr and Zublasing, 2010) or angiosperms (Weiser and Wallner, 1988; Kikuta and Richter, 2003), but few of them measured embolism concomitantly. Percentage loss of hydraulic conductivity (PLC) was only measured in a few studies and only in conifers (Mayr et al., 2007; Mayr and Sperry, 2010).In this study, we analyzed the effect of freeze-thaw cycles on the hydraulic conductivity and ultrasonic activity in 10 angiosperm species. We hypothesized that (1) the extent of freeze-thaw-induced embolism depends on xylem anatomy (related to conduit diameter) and minimal temperature (related to the water potential of ice); (2) ultrasonic activity is also influenced by anatomy and temperature; and (3) PLC and UE are positively correlated. PLC was measured in 10 angiosperm species after freeze-thaw cycles at different minimal temperatures (−10 to −40°C). Furthermore, UE were recorded during a freeze-thaw cycle down to −40°C.     

Focus on Water: Down-Regulation of Plasma Intrinsic Protein1 Aquaporin in Poplar Trees Is Detrimental to Recovery from Embolism

During their lifecycles, trees encounter multiple events of water stress that often result in embolism formation and temporal decreases in xylem transport capacity. The restoration of xylem transport capacity requires changes in cell metabolic activity and gene expression. Specifically, in poplar (Populus spp.), the formation of xylem embolisms leads to a clear up-regulation of plasma membrane protein1 (PIP1) aquaporin genes. To determine their role in poplar response to water stress, transgenic Populus tremula × Populus alba plants characterized by the strong down-regulation of multiple isoforms belonging to the PIP1 subfamily were used. Transgenic lines showed that they are more vulnerable to embolism, with 50% percent loss of conductance occurring 0.3 MPa earlier than in wild-type plants, and that they also have a reduced capacity to restore xylem conductance during recovery. Transgenic plants also show symptoms of a reduced capacity to control percent loss of conductance through stomatal conductance in response to drought, because they have a much narrower vulnerability safety margin. Finally, a delay in stomatal conductance recovery during the period of stress relief was observed. The presented results suggest that PIP1 genes are involved in the maintenance of xylem transport system capacity, in the promotion of recovery from stress, and in contribution to a plant’s control of stomatal conductance under water stress.Long-distance water transport in vascular plants occurs in a conduit network of nonliving cells connecting roots to leaves (Sperry, 2003). Often under drought conditions, the water column within the lumen of xylem vessels or tracheids can be subjected to tensions that result in cavitation and the subsequent formation of embolisms (Holbrook and Zwieniecki, 2008). This hydraulic failure within the xylem network can cause tissue damage, loss of plant productivity, and ultimately, plant death (Tyree and Sperry, 1989; Sperry et al., 1998; Zwieniecki and Holbrook, 2009). Plants have evolved several strategies to prevent and/or mitigate the effects of hydraulic failure caused by embolism and restore xylem transport capacity after embolism occurs (Stiller and Sperry, 2002; Nardini et al., 2011; Secchi and Zwieniecki, 2012). These strategies include passive, often long-term responses, like the growth of new vessels/tracheids or dieback followed by the growth of new shoots (shrubs), or active, often fast responses that result in the restoration of hydraulic conductivity by (1) creating positive pressure through root or stem pressure in the complete transport system (xylem level; Cochard et al., 1994; Ewers et al., 1997; Yang et al., 2012) or (2) enabling positive pressures in specific, embolized conduits, despite negative pressure in the surrounding xylem (conduit level; Salleo et al., 2004; Nardini et al., 2011; Brodersen and McElrone, 2013).Although embolism formation is a purely physical process related to the degree of tension in the water column and a wood’s physicochemical properties (Brennen, 1995; Tyree and Zimmermann, 2002), embolism removal requires that empty vessels fill with water against existing energy gradients as the bulk of water in the xylem remains under tension caused by transpiration. Thus, recovery from embolism cannot happen spontaneously and necessitates some physiological activities that promote water flow into embolized vessels (Holbrook and Zwieniecki, 1999; Thomas Tyree et al., 1999; Salleo et al., 2004; Zwieniecki and Holbrook, 2009; Secchi et al., 2011). Visual evidence from cryo-scanning electron microscopy studies, magnetic resonance imaging observations, and computed tomography scans showed that water (xylem sap) can return to empty vessels, suggesting that plants do have the ability to restore functionality in the xylem (Holbrook et al., 2001; Clearwater and Goldstein, 2005; Scheenen et al., 2007). Brodersen et al. (2010) showed that water droplets preferentially form on the vessel walls adjacent to parenchyma cells and that these droplets grow until the lumen completely refills. In addition, scientific support for the existence of embolism/refilling cycles in intact stems of Acer rubrum are provided using magnetic resonance imaging (Zwieniecki et al., 2013). Droplet formation on the walls of empty vessels that are in contact with parenchyma cells support predictions that these living cells supply both water and energy to drive the restoration of xylem hydraulic function.Processes related to water transport across the cellular membrane involve plasma intrinsic protein (PIP; aquaporins) moderators, and thus, the role of PIPs must be considered when contemplating how plants recover from embolism formation. Plant aquaporins show a great diversity and are classified into five major homologous groups that reflect specific subcellular localizations (Prado and Maurel, 2013). Among different aquaporin gene families (26-like intrinsic proteins, tonoplast intrinsic proteins, X unrecognized intrinsic proteins, small basic intrinsic proteins, and PIPs; Danielson and Johanson, 2008), the PIPs represent the largest number of members and can be further divided into two subfamilies, PIP1 and PIP2. There is a large body of evidence that aquaporins from the PIP2 subfamily contribute to water transport. The generation of data has been multidisciplinary and involved the use of chemical blockers, the down-regulation and up-regulation of genes in plants, and the expression of these proteins in oocytes (Hukin et al., 2002; Postaire et al., 2010; Shatil-Cohen et al., 2011). Expression levels of several PIP and TIP members change after the dynamic of increasing water stress and recovery in many woody plants, including walnut (Juglans regia), poplar (Populus trichocarpa.), and grapevine Vitis vinifera; (Sakr et al., 2003; Secchi et al., 2011; Perrone et al., 2012a, 2012b; Laur and Hacke, 2013; Pou et al., 2013). Furthermore, an increase in the expression of PIP2.1 and PIP2.2 genes was observed in vessel-associated parenchyma cells in walnuts at the same time that recovery from embolism was taking place (Sakr et al., 2003). The role of genes from the PIP1 subfamily in tree responses to water stress is less well-understood. PIP1s were shown to have little to no water channel activity when expressed in oocytes on their own. However, coexpression of PIP1.1 proteins with an isoform from the PIP2 subfamily led to higher membrane permeability than that observed with the expression of a single PIP2 protein (Fetter et al., 2004; Secchi and Zwieniecki, 2010). With respect to their role in mediating water stress, it was shown that the expression level of several PIP1 genes in poplar changed significantly during the onset of stress, during recovery, during the formation of embolisms after water stress, and under no stress conditions but with induced embolism, whereas the expression of PIP2 genes remained mostly unresponsive (Secchi and Zwieniecki, 2010; Secchi et al., 2011; Secchi and Zwieniecki, 2011).Despite significant effort invested in elucidating the contribution of aquaporins to the regulation of xylem hydraulic capacity throughout the progression of drought and recovery from water stress, evidence of their active role in vivo is only partially confirmed. Genetic approaches provide a reliable and effective strategy for determining the physiological function of aquaporin genes in plant water relations. However, most studies thus far have been conducted on herbaceous plants (Kaldenhoff et al., 1998; Postaire et al., 2010). For example, Arabidopsis (Arabidopsis thaliana) plants expressing PIP antisense genes exhibit an impaired ability to recover from water stress (Martre et al., 2002), and knockout mutants exhibit reduced leaf hydraulic conductivity (Da Ines et al., 2010). The Nicotiana tabacum aquaporin1 (NtAQP1) down-regulated tobacco plants show reduced root hydraulic conductivity and lower water stress resistance (Siefritz et al., 2002). RNA technology, although not often used for woody plants, has been adapted for grapevine (Perrone et al., 2012a, 2012b) and Eucalyptus spp. trees (Tsuchihira et al., 2010); in both cases, analysis focused on overexpressing specific isoforms of aquaporin genes. The PIP2;4 root-specific aquaporin enhanced water transport in transformed Vitis spp. plants under well-watered conditions but not under water stress (Perrone et al., 2012a, 2012b), whereas Eucalyptus spp. hybrid clones overexpressing two Raphanus sativus genes (RsPIP1;1 and RsPIP2;1) did not display any increase in drought tolerance (Tsuchihira et al., 2010). To date, no research on the recovery from embolism formation in woody plants with impaired aquaporin expression has been conducted.In this study, we used poplar transgenic plants characterized by a strong down-regulation of PIP1 genes to test the role of this aquaporin subfamily in the plant response to water stress and subsequent recovery from stress. Although transformed poplars did not show morphologically different phenotypes compared with wild-type plants, they were found to be more sensitive to imposed water stress, resulting in increased vulnerability to embolism formation and the loss of stomatal conductance. We also noted a reduced capacity of transformed plants to restore xylem water transport.     

Cavitation Resistance in Seedless Vascular Plants: The Structure and Function of Interconduit Pit Membranes

Plant water transport occurs through interconnected xylem conduits that are separated by partially digested regions in the cell wall known as pit membranes. These structures have a dual function. Their porous construction facilitates water movement between conduits while limiting the spread of air that may enter the conduits and render them dysfunctional during a drought. Pit membranes have been well studied in woody plants, but very little is known about their function in more ancient lineages such as seedless vascular plants. Here, we examine the relationships between conduit air seeding, pit hydraulic resistance, and pit anatomy in 10 species of ferns (pteridophytes) and two lycophytes. Air seeding pressures ranged from 0.8 ± 0.15 MPa (mean ± sd) in the hydric fern Athyrium filix-femina to 4.9 ± 0.94 MPa in Psilotum nudum, an epiphytic species. Notably, a positive correlation was found between conduit pit area and vulnerability to air seeding, suggesting that the rare-pit hypothesis explains air seeding in early-diverging lineages much as it does in many angiosperms. Pit area resistance was variable but averaged 54.6 MPa s m⁻¹ across all surveyed pteridophytes. End walls contributed 52% to the overall transport resistance, similar to the 56% in angiosperm vessels and 64% in conifer tracheids. Taken together, our data imply that, irrespective of phylogenetic placement, selection acted on transport efficiency in seedless vascular plants and woody plants in equal measure by compensating for shorter conduits in tracheid-bearing plants with more permeable pit membranes.Water transport in plants occurs under tension, which renders the xylem susceptible to air entry. This air seeding may lead to the rupture of water columns (cavitation) such that the air expands within conduits to create air-vapor embolisms that block further transport. (Zimmermann and Tyree, 2002). Excessive embolism such as that which occurs during a drought may jeopardize leaf hydration and lead to stomatal closure, overheating, wilting, and possibly death of the plant (Hubbard et al., 2001; Choat et al., 2012; Schymanski et al., 2013). Consequently, strong selection pressure resulted in compartmentalized and redundant plant vascular networks that are adapted to a species habitat water availability by way of life history strategy (i.e. phenology) or resistance to air seeding (Tyree et al., 1994; Mencuccini et al., 2010; Brodersen et al., 2012). The spread of drought-induced embolism is limited primarily by pit membranes, which are permeable, mesh-like regions in the primary cell wall that connect two adjacent conduits. The construction of the pit membrane is such that water easily moves across the membrane between conduits, but because of the small membrane pore size and the presence of a surface coating on the membrane (Pesacreta et al., 2005; Lee et al., 2012), the spread of air and gas bubbles is restricted up to a certain pressure threshold known as the air-seeding pressure (ASP). When xylem sap tension exceeds the air-seeding threshold, air can be aspirated from an air-filled conduit into a functional water-filled conduit through perhaps a large, preexisting pore or one that is created by tension-induced membrane stress (Rockwell et al., 2014). Air seeding leads to cavitation and embolism formation, with emboli potentially propagating throughout the xylem network (Tyree and Sperry, 1988; Brodersen et al., 2013). So, on the one hand, pit membranes are critical to controlling the spread of air throughout the vascular network, while on the other hand, they must facilitate the efficient flow of water between conduits (Choat et al., 2008; Domec et al., 2008; Pittermann et al., 2010; Schulte, 2012). Much is known about such hydraulic tradeoffs in the pit membranes of woody plants, but comparatively little data exist on seedless vascular plants such as ferns and lycophytes. Given that seedless vascular plants may bridge the evolutionary transition from bryophytes to woody plants, the lack of functional data on pit membrane structure in early-derived tracheophytes is a major gap in our understanding of the evolution of plant water transport.In woody plants, pit membranes fall into one of two categories: the torus-margo type found in most gymnosperms and the homogenous pit membrane characteristic of angiosperms (Choat et al., 2008; Choat and Pittermann, 2009). In conifers, water moves from one tracheid to another through the margo region of the membrane, with the torus sealing the pit aperture should one conduit become embolized. Air seeding occurs when water potential in the functional conduit drops low enough to dislodge the torus from its sealing position, letting air pass through the pit aperture into the water-filled tracheid (Domec et al., 2006; Delzon et al., 2010; Pittermann et al., 2010; Schulte, 2012; but see Jansen et al., 2012). Across north-temperate conifer species, larger pit apertures correlate with lower pit resistance to water flow (r_pit; MPa s m⁻¹), but it is the ratio of torus-aperture overlap that sets a species cavitation resistance (Pittermann et al., 2006, 2010; Domec et al., 2008; Hacke and Jansen, 2009). A similar though mechanistically different tradeoff exists in angiosperm pit membranes. Here, air seeding reflects a probabilistic relationship between membrane porosity and the total area of pit membranes present in the vessel walls. Specifically, the likelihood of air aspirating into a functional conduit is determined by the combination of xylem water potential and the diameter of the largest pore and/or the weakest zone in the cellulose matrix in the vessel’s array of pit membranes (Wheeler et al., 2005; Hacke et al., 2006; Christman et al., 2009; Rockwell et al., 2014). As it has come to be known, the rare-pit hypothesis suggests that the infrequent, large-diameter leaky pore giving rise to that rare pit reflects some combination of pit membrane traits such as variation in conduit membrane area (large or small), membrane properties (tight or porous), and hydrogel membrane chemistry (Hargrave et al., 1994; Choat et al., 2003; Wheeler et al., 2005; Hacke et al., 2006; Christman et al., 2009; Lee et al., 2012; Plavcová et al., 2013; Rockwell et al., 2014). The maximum pore size is critical because, per the Young-Laplace law, the larger the radius of curvature, the lower the air-water pressure difference under which the contained meniscus will fail (Jarbeau et al., 1995; Choat et al., 2003; Jansen et al., 2009). Consequently, angiosperms adapted to drier habitats may exhibit thicker, denser, smaller, and less abundant pit membranes than plants occupying regions with higher water availability (Wheeler et al., 2005; Hacke et al., 2007; Jansen et al., 2009; Lens et al., 2011; Scholz et al., 2013). However, despite these qualitative observations, there is no evidence that increased cavitation resistance arrives at the cost of higher r_pit. Indeed, the bulk of the data suggest that prevailing pit membrane porosity is decoupled from the presence of the single largest pore that allows air seeding to occur (Choat et al., 2003; Wheeler et al., 2005 Hacke et al., 2006, 2007).As water moves from one conduit to another, pit membranes offer considerable hydraulic resistance throughout the xylem network. On average, r_pit contributes 64% and 56% to transport resistance in conifers and angiosperms, respectively (Wheeler et al., 2005; Pittermann et al., 2006; Sperry et al., 2006). In conifers, the average r_pit is estimated at 6 ± 1 MPa s m⁻¹, almost 60 times lower than the 336 ± 81 MPa s m⁻¹ computed for angiosperms (Wheeler et al., 2005; Hacke et al., 2006; Sperry et al., 2006). Presumably, the high porosity of conifer pits compensates for the higher transport resistance offered by a vascular system composed of narrow, short, single-celled conduits (Pittermann et al., 2005; Sperry et al., 2006).Transport in seedless vascular plants presents an interesting conundrum because, with the exception of a handful of species, their primary xylem is composed of tracheids, the walls of which are occupied by homogenous pit membranes (Gibson et al., 1985; Carlquist and Schneider, 2001, 2007; but see Morrow and Dute, 1998, for torus-margo membranes in Botrychium spp.). At first pass, this combination of traits appears hydraulically maladaptive, but several studies have shown that ferns can exhibit transport capacities that are on par with more recently evolved plants (Wheeler et al., 2005; Watkins et al., 2010; Pittermann et al., 2011, 2013; Brodersen et al., 2012). Certainly, several taxa possess large-diameter, highly overlapping conduits, some even have vessels such as Pteridium aquilinum and many species have high conduit density, all of which could contribute to increased hydraulic efficiency (Wheeler et al., 2005; Pittermann et al., 2011, 2013). But how do the pit membranes of seedless vascular plants compare? Scanning electron micrographs of fern and lycopod xylem conduits suggest that they are thin, diaphanous, and susceptible to damage during specimen preparation (Carlquist and Schneider 2001, 2007). Consistent with such observations, two estimates of r_pit imply that r_pit in ferns may be significantly lower than in angiosperms; Wheeler et al. (2005) calculated r_pit in the fern Pteridium aquilinum at 31 MPa s m⁻¹, while Schulte et al. (1987) estimated r_pit at 1.99 MPa s m⁻¹ in the basal fern Psilotum nudum. The closest structural analogy to seedless vascular plant tracheids can be found in the secondary xylem of the early-derived vesselless angiosperms, in which tracheids possess homogenous pit membranes with r_pit values that at 16 MPa s m⁻¹ are marginally higher than those of conifers (Hacke et al., 2007). Given that xylem in seedless vascular plants is functionally similar to that in vesselless angiosperms, we expected convergent r_pit values in these two groups despite their phylogenetic distance. We tested this hypothesis, as well as the intrinsic cavitation resistance of conduits in seedless vascular plants, by scrutinizing the pit membranes of ferns and fern allies using the anatomical and experimental approaches applied previously to woody taxa. In particular, we focused on the relationship between pit membrane traits and cavitation resistance at the level of the individual conduit.     

Turnip mosaic virus Moves Systemically through Both Phloem and Xylem as Membrane-Associated Complexes

Plant viruses move systemically in plants through the phloem. They move as virions or as ribonucleic protein complexes, although it is not clear what these complexes are made of. The approximately 10-kb RNA genome of Turnip mosaic virus (TuMV) encodes a membrane protein, known as 6K₂, that induces endomembrane rearrangements for the formation of viral replication factories. These factories take the form of vesicles that contain viral RNA (vRNA) and viral replication proteins. In this study, we report the presence of 6K₂-tagged vesicles containing vRNA and the vRNA-dependent RNA polymerase in phloem sieve elements and in xylem vessels. Transmission electron microscopy observations showed the presence in the xylem vessels of vRNA-containing vesicles that were associated with viral particles. Stem-girdling experiments, which leave xylem vessels intact but destroy the surrounding tissues, confirmed that TuMV could establish a systemic infection of the plant by going through xylem vessels. Phloem sieve elements and xylem vessels from Potato virus X-infected plants also contained lipid-associated nonencapsidated vRNA, indicating that the presence of membrane-associated ribonucleic protein complexes in the phloem and xylem may not be limited to TuMV. Collectively, these studies indicate that viral replication factories could end up in the phloem and the xylem.Plant viruses use the host preexisting transport routes to propagate infection to the whole plant. After replication in the initially infected cells, viruses move cell to cell through plasmodesmata (PD) and start a new round of replication in the newly infected cells. This cycle is repeated until viruses reach vascular tissues, where they enter into the conducting tubes for systemic movement. Several studies have indicated that plant viruses are passively transported along the source-to-sink flow of photoassimilates and thus are believed to move systemically through the phloem (for review, see Hipper et al., 2013).The conducting tube of the phloem is the sieve element. The mature sieve element is enucleated and relies on the associated companion cells for the maintenance of its physiological function (Fisher et al., 1992). The specialized PD connecting one sieve element with one companion cell is called the pore plasmodesmal unit (PPU). Different from the other PDs, PPUs are always branched on the companion cell side but have only one channel on the sieve element side (Oparka and Turgeon, 1999). It is believed that the loading and uploading of viral material during phloem transport are through PPUs. Even though the size exclusion limit of PPUs (Kempers and Bel, 1997) is larger than that of the other PDs (Wolf et al., 1989; Derrick et al., 1990), PPUs should not allow, in their native state, virions or viral ribonucleoprotein (vRNP) complexes to pass through. It is thus believed that specific interactions between virus and host factors are required to allow the viral entity to go through. For instance, the movement protein of Cucumber mosaic virus (CMV) is targeted to PPUs (Blackman et al., 1998), suggesting that this viral protein modifies the size exclusion limit of PPUs and helps viral entry into sieve elements.Most plant viruses are assumed to move systemically through the phloem as virions. This assumption is based on the observation that Coat Protein (CP) deletions debilitating virus assembly prevent systemic infection (Brault et al., 2003; Zhang et al., 2013; Hipper et al., 2014). Some investigations showed the actual presence of virions in sieve elements. This is the case for the icosahedral Tobacco ringspot virus (Halk and McGuire, 1973), Carrot red leaf virus (Murant and Roberts, 1979), Potato leaf roll virus (Shepardson et al., 1980), and Beet western yellows virus (Hoefert, 1984). In addition, virions also were observed in phloem sap, such as the icosahedral CMV (Requena et al., 2006) and the rigid rod-shaped Cucumber green mottle mosaic virus (Simón-Buela and García-Arenal, 1999). Some viruses also are believed to move as ribonucleic protein (RNP) complexes, since systemic movement was observed in CP mutants where virion assembly was hindered. For instance, Tobacco rattle virus, Potato mop-top virus, Brome mosaic virus, and Tomato bushy stunt virus can still move systemically when the CP gene has been deleted from the viral genome (Swanson et al., 2002; Savenkov et al., 2003; Gopinath and Kao, 2007; Manabayeva et al., 2013). For potyviruses, it is still not clear if long-distance transport involves exclusively viral particles or if vRNP complexes also are implicated (Dolja et al., 1994, 1995; Cronin et al., 1995; Schaad et al., 1997; Kasschau and Carrington, 2001; Rajamaki and Valkonen, 2002). But whether virions or vRNP complexes are involved in viral movement, the full nature of the viral entity being implicated has not been defined.Xylem also is used for systemic infection of viruses, but its importance in viral transport generally has been overlooked. Vessel elements are the building blocks of xylem vessels, which constitute the major part of the water-upward-transporting system in a plant. The side walls of mature vessel elements contain pits, which are areas lacking a secondary cell wall; the end walls of the mature vessel elements are removed, and the openings are called perforation plates (Roberts and McCann, 2000). CP or virions of some plant viruses of all different shapes have been detected in the xylem vessels and/or guttation fluid, suggesting that these viruses may move systemically through xylem vessels. For example, the CP of the icosahedral Tomato bushy stunt virus (Manabayeva et al., 2013) and Rice yellow mottle virus (Opalka et al., 1998), the CP of the rigid rod-shaped Soilborne wheat mosaic virus (Verchot et al., 2001) and Cucumber green mottle mosaic virus (Moreno et al., 2004), and the flexuous rod-shaped Potato virus X (PVX; Betti et al., 2012) were detected in xylem vessels. Colocalization of anti-Rice yellow mottle virus antibodies and a cell wall marker for cellulosic β-(1-4)-d-glucans over vessel pit membranes suggests that the pit membranes might be a pathway for virus migration between vessels (Opalka et al., 1998). Moreover, flexuous rod-shaped virions of Zucchini yellow mosaic virus were found in both xylem vessels of root tissue and the guttation fluid (French and Elder, 1999). Finally, icosahedral Brome mosaic virus (Ding et al., 2001) and rigid rod-shaped Tomato mosaic virus and Pepper mild mottle virus (French et al., 1993) virions were found in guttation fluid. Guttation fluid originates from xylem exudate, indicating that these plant viruses can move through xylem within the infected plant. The above studies, however, mainly relied on electron microscopy and infection assays and may have missed the presence of other viral components that might be involved in transport.Turnip mosaic virus (TuMV) is a positive-strand RNA virus belonging to the family Potyviridae, genus Potyvirus, which contains around 30% of the currently known plant viruses and causes serious diseases in numerous crops (Shukla et al., 1994). Potyviruses are nonenveloped, flexuous rod-shaped particles of 680 to 900 nm in length and 11 to 13 nm in diameter. The genomic approximately 10-kb RNA encodes a polyprotein, which is processed into at least 11 mature proteins. TuMV remodels cellular membranes into viral factories, which are intracellular compartments involved in viral replication and movement. These compartments take the form of vesicles of approximately 100 nm in diameter originating from the endoplasmic reticulum (Grangeon et al., 2012). These vesicles contain viral RNA (vRNA) and viral and host proteins involved in vRNA replication (Beauchemin et al., 2007; Beauchemin and Laliberté, 2007; Dufresne et al., 2008; Huang et al., 2010; Grangeon et al., 2012). The viral membrane 6K₂ protein is involved in the membrane alterations and vesicle production (Beauchemin et al., 2007). The membrane-bound replication complexes can move intracellularly and cell to cell (Grangeon et al., 2013) at a rate of one cell being infected every 3 h (Agbeci et al., 2013). Intercellular trafficking of the replication complex is likely mediated by the PD-localized potyviral proteins Cytoplasmic Inclusion (CI) and P3N-PIPO (for N-terminal Half of P3 fused to the Pretty Interesting Potyviridae ORF; Carrington et al., 1998; Wei et al., 2010; Vijayapalani et al., 2012) as well as CP (Dolja et al., 1994, 1995), Viral Protein genome-linked (VPg; Nicolas et al., 1997; Rajamaki and Valkonen, 1999, 2002), and Helper Component-Proteinase (HC-Pro; Cronin et al., 1995; Kasschau et al., 1997; Rojas et al., 1997; Kasschau and Carrington, 2001), which are involved in both cell-to-cell and vascular movement.It is expected that, ultimately, TuMV reaches the vascular tissues of the plant, but how and under what form it is released into the conducting tubes are not known. To further understand viral spread and systemic movement, we investigated the distribution of 6K₂-tagged TuMV factories in all of the leaf and stem tissues other than the epidermal cells. We found TuMV factories in all tissues. Interestingly, we observed 6K₂-tagged vesicles, containing vRNA and viral replication proteins, in both phloem sieve elements and xylem vessels. We confirmed that TuMV could move systemically through xylem by a so-called stem-girdling assay, which induces cell death of the phloem without affecting xylem integrity. Hence, our study indicates that membrane-associated TuMV replication complexes are involved in the systemic movement of the virus.     

Spore Density Determines Infection Strategy by the Plant Pathogenic Fungus Plectosphaerella cucumerina

Necrotrophic and biotrophic pathogens are resisted by different plant defenses. While necrotrophic pathogens are sensitive to jasmonic acid (JA)-dependent resistance, biotrophic pathogens are resisted by salicylic acid (SA)- and reactive oxygen species (ROS)-dependent resistance. Although many pathogens switch from biotrophy to necrotrophy during infection, little is known about the signals triggering this transition. This study is based on the observation that the early colonization pattern and symptom development by the ascomycete pathogen Plectosphaerella cucumerina (P. cucumerina) vary between inoculation methods. Using the Arabidopsis (Arabidopsis thaliana) defense response as a proxy for infection strategy, we examined whether P. cucumerina alternates between hemibiotrophic and necrotrophic lifestyles, depending on initial spore density and distribution on the leaf surface. Untargeted metabolome analysis revealed profound differences in metabolic defense signatures upon different inoculation methods. Quantification of JA and SA, marker gene expression, and cell death confirmed that infection from high spore densities activates JA-dependent defenses with excessive cell death, while infection from low spore densities induces SA-dependent defenses with lower levels of cell death. Phenotyping of Arabidopsis mutants in JA, SA, and ROS signaling confirmed that P. cucumerina is differentially resisted by JA- and SA/ROS-dependent defenses, depending on initial spore density and distribution on the leaf. Furthermore, in situ staining for early callose deposition at the infection sites revealed that necrotrophy by P. cucumerina is associated with elevated host defense. We conclude that P. cucumerina adapts to early-acting plant defenses by switching from a hemibiotrophic to a necrotrophic infection program, thereby gaining an advantage of immunity-related cell death in the host.Plant pathogens are often classified as necrotrophic or biotrophic, depending on their infection strategy (Glazebrook, 2005; Nishimura and Dangl, 2010). Necrotrophic pathogens kill living host cells and use the decayed plant tissue as a substrate to colonize the plant, whereas biotrophic pathogens parasitize living plant cells by employing effector molecules that suppress the host immune system (Pel and Pieterse, 2013). Despite this binary classification, the majority of pathogenic microbes employ a hemibiotrophic infection strategy, which is characterized by an initial biotrophic phase followed by a necrotrophic infection strategy at later stages of infection (Perfect and Green, 2001). The pathogenic fungi Magnaporthe grisea, Sclerotinia sclerotiorum, and Mycosphaerella graminicola, the oomycete Phytophthora infestans, and the bacterial pathogen Pseudomonas syringae are examples of hemibiotrophic plant pathogens (Perfect and Green, 2001; Koeck et al., 2011; van Kan et al., 2014; Kabbage et al., 2015).Despite considerable progress in our understanding of plant resistance to necrotrophic and biotrophic pathogens (Glazebrook, 2005; Mengiste, 2012; Lai and Mengiste, 2013), recent debate highlights the dynamic and complex interplay between plant-pathogenic microbes and their hosts, which is raising concerns about the use of infection strategies as a static tool to classify plant pathogens. For instance, the fungal genus Botrytis is often labeled as an archetypal necrotroph, even though there is evidence that it can behave as an endophytic fungus with a biotrophic lifestyle (van Kan et al., 2014). The rice blast fungus Magnaporthe oryzae, which is often classified as a hemibiotrophic leaf pathogen (Perfect and Green, 2001; Koeck et al., 2011), can adopt a purely biotrophic lifestyle when infecting root tissues (Marcel et al., 2010). It remains unclear which signals are responsible for the switch from biotrophy to necrotrophy and whether these signals rely solely on the physiological state of the pathogen, or whether host-derived signals play a role as well (Kabbage et al., 2015).The plant hormones salicylic acid (SA) and jasmonic acid (JA) play a central role in the activation of plant defenses (Glazebrook, 2005; Pieterse et al., 2009, 2012). The first evidence that biotrophic and necrotrophic pathogens are resisted by different immune responses came from Thomma et al. (1998), who demonstrated that Arabidopsis (Arabidopsis thaliana) genotypes impaired in SA signaling show enhanced susceptibility to the biotrophic pathogen Hyaloperonospora arabidopsidis (formerly known as Peronospora parastitica), while JA-insensitive genotypes were more susceptible to the necrotrophic fungus Alternaria brassicicola. In subsequent years, the differential effectiveness of SA- and JA-dependent defense mechanisms has been confirmed in different plant-pathogen interactions, while additional plant hormones, such as ethylene, abscisic acid (ABA), auxins, and cytokinins, have emerged as regulators of SA- and JA-dependent defenses (Bari and Jones, 2009; Cao et al., 2011; Pieterse et al., 2012). Moreover, SA- and JA-dependent defense pathways have been shown to act antagonistically on each other, which allows plants to prioritize an appropriate defense response to attack by biotrophic pathogens, necrotrophic pathogens, or herbivores (Koornneef and Pieterse, 2008; Pieterse et al., 2009; Verhage et al., 2010).In addition to plant hormones, reactive oxygen species (ROS) play an important regulatory role in plant defenses (Torres et al., 2006; Lehmann et al., 2015). Within minutes after the perception of pathogen-associated molecular patterns, NADPH oxidases and apoplastic peroxidases generate early ROS bursts (Torres et al., 2002; Daudi et al., 2012; O’Brien et al., 2012), which activate downstream defense signaling cascades (Apel and Hirt, 2004; Torres et al., 2006; Miller et al., 2009; Mittler et al., 2011; Lehmann et al., 2015). ROS play an important regulatory role in the deposition of callose (Luna et al., 2011; Pastor et al., 2013) and can also stimulate SA-dependent defenses (Chaouch et al., 2010; Yun and Chen, 2011; Wang et al., 2014; Mammarella et al., 2015). However, the spread of SA-induced apoptosis during hyperstimulation of the plant immune system is contained by the ROS-generating NADPH oxidase RBOHD (Torres et al., 2005), presumably to allow for the sufficient generation of SA-dependent defense signals from living cells that are adjacent to apoptotic cells. Nitric oxide (NO) plays an additional role in the regulation of SA/ROS-dependent defense (Trapet et al., 2015). This gaseous molecule can stimulate ROS production and cell death in the absence of SA while preventing excessive ROS production at high cellular SA levels via S-nitrosylation of RBOHD (Yun et al., 2011). Recently, it was shown that pathogen-induced accumulation of NO and ROS promotes the production of azelaic acid, a lipid derivative that primes distal plants for SA-dependent defenses (Wang et al., 2014). Hence, NO, ROS, and SA are intertwined in a complex regulatory network to mount local and systemic resistance against biotrophic pathogens. Interestingly, pathogens with a necrotrophic lifestyle can benefit from ROS/SA-dependent defenses and associated cell death (Govrin and Levine, 2000). For instance, Kabbage et al. (2013) demonstrated that S. sclerotiorum utilizes oxalic acid to repress oxidative defense signaling during initial biotrophic colonization, but it stimulates apoptosis at later stages to advance necrotrophic colonization. Moreover, SA-induced repression of JA-dependent resistance not only benefits necrotrophic pathogens but also hemibiotrophic pathogens after having switched from biotrophy to necrotrophy (Glazebrook, 2005; Pieterse et al., 2009, 2012).Plectosphaerella cucumerina ((P. cucumerina, anamorph Plectosporum tabacinum) anamorph Plectosporum tabacinum) is a filamentous ascomycete fungus that can survive saprophytically in soil by decomposing plant material (Palm et al., 1995). The fungus can cause sudden death and blight disease in a variety of crops (Chen et al., 1999; Harrington et al., 2000). Because P. cucumerina can infect Arabidopsis leaves, the P. cucumerina-Arabidopsis interaction has emerged as a popular model system in which to study plant defense reactions to necrotrophic fungi (Berrocal-Lobo et al., 2002; Ton and Mauch-Mani, 2004; Carlucci et al., 2012; Ramos et al., 2013). Various studies have shown that Arabidopsis deploys a wide range of inducible defense strategies against P. cucumerina, including JA-, SA-, ABA-, and auxin-dependent defenses, glucosinolates (Tierens et al., 2001; Sánchez-Vallet et al., 2010; Gamir et al., 2014; Pastor et al., 2014), callose deposition (García-Andrade et al., 2011; Gamir et al., 2012, 2014; Sánchez-Vallet et al., 2012), and ROS (Tierens et al., 2002; Sánchez-Vallet et al., 2010; Barna et al., 2012; Gamir et al., 2012, 2014; Pastor et al., 2014). Recent metabolomics studies have revealed large-scale metabolic changes in P. cucumerina-infected Arabidopsis, presumably to mobilize chemical defenses (Sánchez-Vallet et al., 2010; Gamir et al., 2014; Pastor et al., 2014). Furthermore, various chemical agents have been reported to induce resistance against P. cucumerina. These chemicals include β-amino-butyric acid, which primes callose deposition and SA-dependent defenses, benzothiadiazole (BTH or Bion; Görlach et al., 1996; Ton and Mauch-Mani, 2004), which activates SA-related defenses (Lawton et al., 1996; Ton and Mauch-Mani, 2004; Gamir et al., 2014; Luna et al., 2014), JA (Ton and Mauch-Mani, 2004), and ABA, which primes ROS and callose deposition (Ton and Mauch-Mani, 2004; Pastor et al., 2013). However, among all these studies, there is increasing controversy about the exact signaling pathways and defense responses contributing to plant resistance against P. cucumerina. While it is clear that JA and ethylene contribute to basal resistance against the fungus, the exact roles of SA, ABA, and ROS in P. cucumerina resistance vary between studies (Thomma et al., 1998; Ton and Mauch-Mani, 2004; Sánchez-Vallet et al., 2012; Gamir et al., 2014).This study is based on the observation that the disease phenotype during P. cucumerina infection differs according to the inoculation method used. We provide evidence that the fungus follows a hemibiotrophic infection strategy when infecting from relatively low spore densities on the leaf surface. By contrast, when challenged by localized host defense to relatively high spore densities, the fungus switches to a necrotrophic infection program. Our study has uncovered a novel strategy by which plant-pathogenic fungi can take advantage of the early immune response in the host plant.     

Multiscale Metabolic Modeling: Dynamic Flux Balance Analysis on a Whole-Plant Scale

Plant metabolism is characterized by a unique complexity on the cellular, tissue, and organ levels. On a whole-plant scale, changing source and sink relations accompanying plant development add another level of complexity to metabolism. With the aim of achieving a spatiotemporal resolution of source-sink interactions in crop plant metabolism, a multiscale metabolic modeling (MMM) approach was applied that integrates static organ-specific models with a whole-plant dynamic model. Allowing for a dynamic flux balance analysis on a whole-plant scale, the MMM approach was used to decipher the metabolic behavior of source and sink organs during the generative phase of the barley (Hordeum vulgare) plant. It reveals a sink-to-source shift of the barley stem caused by the senescence-related decrease in leaf source capacity, which is not sufficient to meet the nutrient requirements of sink organs such as the growing seed. The MMM platform represents a novel approach for the in silico analysis of metabolism on a whole-plant level, allowing for a systemic, spatiotemporally resolved understanding of metabolic processes involved in carbon partitioning, thus providing a novel tool for studying yield stability and crop improvement.Plants are of vital significance as a source of food (Grusak and DellaPenna, 1999; Rogalski and Carrer, 2011), feed (Lu et al., 2011), energy (Tilman et al., 2006; Parmar et al., 2011), and feedstocks for the chemical industry (Metzger and Bornscheuer, 2006; Kinghorn et al., 2011). Given the close connection between plant metabolism and the usability of plant products, there is a growing interest in understanding and predicting the behavior and regulation of plant metabolic processes. In order to increase crop quality and yield, there is a need for methods guiding the rational redesign of the plant metabolic network (Schwender, 2009).Mathematical modeling of plant metabolism offers new approaches to understand, predict, and modify complex plant metabolic processes. In plant research, the issue of metabolic modeling is constantly gaining attention, and different modeling approaches applied to plant metabolism exist, ranging from highly detailed quantitative to less complex qualitative approaches (for review, see Giersch, 2000; Morgan and Rhodes, 2002; Poolman et al., 2004; Rios-Estepa and Lange, 2007).A widely used modeling approach is flux balance analysis (FBA), which allows the prediction of metabolic capabilities and steady-state fluxes under different environmental and genetic backgrounds using (non)linear optimization (Orth et al., 2010). Assuming steady-state conditions, FBA has the advantage of not requiring the knowledge of kinetic parameters and, therefore, can be applied to model detailed, large-scale systems. In recent years, the FBA approach has been applied to several different plant species, such as maize (Zea mays; Dal’Molin et al., 2010; Saha et al., 2011), barley (Hordeum vulgare; Grafahrend-Belau et al., 2009b; Melkus et al., 2011; Rolletschek et al., 2011), rice (Oryza sativa; Lakshmanan et al., 2013), Arabidopsis (Arabidopsis thaliana; Poolman et al., 2009; de Oliveira Dal’Molin et al., 2010; Radrich et al., 2010; Williams et al., 2010; Mintz-Oron et al., 2012; Cheung et al., 2013), and rapeseed (Brassica napus; Hay and Schwender, 2011a, 2011b; Pilalis et al., 2011), as well as algae (Boyle and Morgan, 2009; Cogne et al., 2011; Dal’Molin et al., 2011) and photoautotrophic bacteria (Knoop et al., 2010; Montagud et al., 2010; Boyle and Morgan, 2011). These models have been used to study different aspects of metabolism, including the prediction of optimal metabolic yields and energy efficiencies (Dal’Molin et al., 2010; Boyle and Morgan, 2011), changes in flux under different environmental and genetic backgrounds (Grafahrend-Belau et al., 2009b; Dal’Molin et al., 2010; Melkus et al., 2011), and nonintuitive metabolic pathways that merit subsequent experimental investigations (Poolman et al., 2009; Knoop et al., 2010; Rolletschek et al., 2011). Although FBA of plant metabolic models was shown to be capable of reproducing experimentally determined flux distributions (Williams et al., 2010; Hay and Schwender, 2011b) and generating new insights into metabolic behavior, capacities, and efficiencies (Sweetlove and Ratcliffe, 2011), challenges remain to advance the utility and predictive power of the models.Given that many plant metabolic functions are based on interactions between different subcellular compartments, cell types, tissues, and organs, the reconstruction of organ-specific models and the integration of these models into interacting multiorgan and/or whole-plant models is a prerequisite to get insight into complex plant metabolic processes organized on a whole-plant scale (e.g. source-sink interactions). Almost all FBA models of plant metabolism are restricted to one cell type (Boyle and Morgan, 2009; Knoop et al., 2010; Montagud et al., 2010; Cogne et al., 2011; Dal’Molin et al., 2011), one tissue or one organ (Grafahrend-Belau et al., 2009b; Hay and Schwender, 2011a, 2011b; Pilalis et al., 2011; Mintz-Oron et al., 2012), and only one model exists taking into account the interaction between two cell types by specifying the interaction between mesophyll and bundle sheath cells in C4 photosynthesis (Dal’Molin et al., 2010). So far, no model representing metabolism at the whole-plant scale exists.Considering whole-plant metabolism raises the problem of taking into account temporal and environmental changes in metabolism during plant development and growth. Although classical static FBA is unable to predict the dynamics of metabolic processes, as the network analysis is based on steady-state solutions, time-dependent processes can be taken into account by extending the classical static FBA to a dynamic flux balance analysis (dFBA), as proposed by Mahadevan et al. (2002). The static (SOA) and dynamic optimization approaches introduced in this work provide a framework for analyzing the transience of metabolism by integrating kinetic expressions to dynamically constrain exchange fluxes. Due to the requirement of knowing or estimating a large number of kinetic parameters, so far dFBA has only been applied to a plant metabolic model once, to study the photosynthetic metabolism in the chloroplasts of C3 plants by a simplified model of five biochemical reactions (Luo et al., 2009). Integrating a dynamic model into a static FBA model is an alternative approach to perform dFBA.In this study, a multiscale metabolic modeling (MMM) approach was applied with the aim of achieving a spatiotemporal resolution of cereal crop plant metabolism. To provide a framework for the in silico analysis of the metabolic dynamics of barley on a whole-plant scale, the MMM approach integrates a static multiorgan FBA model and a dynamic whole-plant multiscale functional plant model (FPM) to perform dFBA. The performance of the novel whole-plant MMM approach was tested by studying source-sink interactions during the seed developmental phase of barley plants.     

Evidence for Hydraulic Vulnerability Segmentation and Lack of Xylem Refilling under Tension

The vascular system of grapevine (Vitis spp.) has been reported as being highly vulnerable, even though grapevine regularly experiences seasonal drought. Consequently, stomata would remain open below water potentials that would generate a high loss of stem hydraulic conductivity via xylem embolism. This situation would necessitate daily cycles of embolism repair to restore hydraulic function. However, a more parsimonious explanation is that some hydraulic techniques are prone to artifacts in species with long vessels, leading to the overestimation of vulnerability. The aim of this study was to provide an unbiased assessment of (1) the vulnerability to drought-induced embolism in perennial and annual organs and (2) the ability to refill embolized vessels in two Vitis species X-ray micro-computed tomography observations of intact plants indicated that both Vitis vinifera and Vitis riparia were relatively vulnerable, with the pressure inducing 50% loss of stem hydraulic conductivity = −1.7 and −1.3 MPa, respectively. In V. vinifera, both the stem and petiole had similar sigmoidal vulnerability curves but differed in pressure inducing 50% loss of hydraulic conductivity (−1.7 and −1 MPa for stem and petiole, respectively). Refilling was not observed as long as bulk xylem pressure remained negative (e.g. at the apical part of the plants; −0.11 ± 0.02 MPa) and change in percentage loss of conductivity was 0.02% ± 0.01%. However, positive xylem pressure was observed at the basal part of the plant (0.04 ± 0.01 MPa), leading to a recovery of conductance (change in percentage loss of conductivity = −0.24% ± 0.12%). Our findings provide evidence that grapevine is unable to repair embolized xylem vessels under negative pressure, but its hydraulic vulnerability segmentation provides significant protection of the perennial stem.The plant hydraulic system is located at the interface between soil water and the atmosphere. Evaporative demand from the atmosphere generates a tension within a continuous xylem water column, pulling water from the soil, through roots, stems, petioles, and leaves (Dixon, 1896). Under drought conditions, the overall resistance to water flow through the soil-plant continuum increases. Increased resistance to water flow results from changes in the resistance at multiple specific locations along the flow pathway: in the soil, at the soil-root interface, and in the roots, the main plant axis (i.e. stems and branches), the petioles, and the leaves. Two primary mechanisms controlling the resistance are stomatal closure (leaf-to-air water flow) and the loss of xylem hydraulic conductivity (soil-to-leaf water flow; Cochard et al., 2002). Stomatal closure is closely related to decreasing plant water status (Brodribb and Holbrook, 2003) and is often considered to be a protective mechanism against the loss of xylem hydraulic conductivity (Tyree and Sperry, 1988; Jones and Sutherland, 1991). Loss of xylem hydraulic conductivity occurs when the water potential of xylem sap reaches levels negative enough to disrupt the metastability of the water column, potentially resulting in embolism.Generally, high resistance to embolism is observed in species distributed in dry environments, whereas highly vulnerable species are distributed in wet environments (Maherali et al., 2004; Choat et al., 2012). Although grapevine (Vitis spp.) is widely cultivated, including in regions where it is frequently exposed to water deficit during the growing season (Lovisolo et al., 2010), recent studies have produced contrasting estimates of its resistance to embolism. Grapevine has been described as either vulnerable (Zufferey et al., 2011; Jacobsen and Pratt, 2012) or relatively resistant (Choat et al., 2010; Brodersen et al., 2013). In Vitis spp., and Vitis vinifera especially, stomatal closure is typically observed for midday leaf water potentials less than −1.5 MPa (Schultz, 2003). Thus, according to some studies, significant losses in xylem hydraulic conductivity should be observed before stomatal closure (Ψ₅₀ > −1 MPa; Jacobsen and Pratt, 2012; Jacobsen et al., 2015), implying that embolism would be commonplace.The risk of hydraulic dysfunction is mitigated along the hydraulic pathway by hydraulic segmentation (i.e. more distal organs such as leaves and petioles will be at greater risk to embolism than more basal organs such as the trunk; Tyree and Zimmermann 2002; Choat et al., 2005). This could promote hydraulic safety in larger, perennial organs, which represent a greater investment of resources for the plant. Hydraulic segmentation may occur in two ways. During transpiration, the xylem pressure will always be more negative in more distal parts of the pathway (leaves and petioles). All else being equal, this translates to a greater probability of embolism in distal organs. However, organs also may differ in their vulnerability to embolism, compensating or exacerbating the effects of differences in xylem pressure along the pathway. If leaves or petioles were more vulnerable to embolism than branches and the trunk, then they would be far more likely to suffer embolism during periods of water stress. This would allow petioles, leaves (Nolf et al., 2015), or even young branches (Rood et al., 2000) to become embolized without significant impacts on the trunk and larger branches. In grapevine, petioles have been described as extremely sensitive to cavitation (Ψ₅₀ of approximately −1 MPa; Zufferey et al., 2011). However, the hydraulic methods employed in those previous studies have been shown to be prone to artifacts (Wheeler et al., 2013; Torres-Ruiz et al., 2015), necessitating the use of a noninvasive assessment of drought-induced embolism.High-resolution computed tomography (HRCT) produces three-dimensional images of xylem tissue in situ, allowing for a noninvasive assessment of embolism resistance. This technique has provided robust results in various plant species with contrasting xylem anatomy (Charra-Vaskou et al., 2012, 2016; Dalla-Salda et al., 2014; Torres-Ruiz et al., 2014; Cochard et al., 2015; Knipfer et al., 2015; Bouche et al., 2016). Synchrotron-based tomography facilities allow the visualization of intact plants, offering a noninvasive, in vivo estimation of the loss of hydraulic conductivity within the xylem (Choat et al., 2016). Moreover, the quality of the x-ray beam in the synchrotron facilities provides high resolution and signal-to-noise ratio, making image analysis simple and accurate.If grapevine were as vulnerable to xylem embolism as suggested in some studies, refilling of embolized vessels would be expected to occur on a frequent (daily) basis in order to maintain hydraulic continuity (Sperry et al., 1994; Cochard et al., 2001; Hacke and Sperry, 2003; Charrier et al., 2013). Various refilling mechanisms have been proposed to date, including positive root/stem pressure and refilling while the xylem is under negative pressure via water droplet growth (Salleo et al., 1996; Brodersen et al., 2010; Knipfer et al., 2016). Positive pressure in the xylem sap can be related to mineral nutrition and soil temperature in autumn or spring (Ewers et al., 2001) and to soluble carbohydrate transport into the vessel lumen during winter (Améglio et al., 2001; Charrier et al., 2013). Refilling under negative pressure is based on the hypothesis that embolized vessels are isolated from surrounding functional vessels, permitting positive pressures to develop and the embolism to dissolve (Salleo et al., 1996; Tyree et al., 1999). This process has been related to the chemistry of conduit walls (Holbrook and Zwieniecki, 1999), the geometry of interconduit bordered pits (Zwieniecki and Holbrook, 2000), and phloem unloading (Nardini et al., 2011). While refilling via positive pressure has been described frequently (Sperry et al., 1987, 1994; Hacke and Sauter 1996; Cochard et al., 2001; Améglio et al., 2004; Cobb et al., 2007), refilling under negative pressure remains controversial (Cochard et al., 2013, 2015). In grapevine particularly, imaging techniques have provided evidence of refilling in embolized vessels (Brodersen et al., 2010), but uncertainties remain regarding the xylem water potential measurement at the position of the scan.The goal of this study was to provide a noninvasive assessment of (1) the vulnerability to drought-induced embolism in two widespread grapevine species in perennial (V. vinifera and Vitis riparia) and annual (V. vinifera) organs and (2) the ability to refill embolized vessels under positive or negative pressure (V. vinifera). This approach would indicate whether embolism formation and repair are likely to occur on a daily basis and/or if hydraulic segmentation could protect perennial organs from drought stress. Stems and petioles from intact V. vinifera ‘Cabernet Sauvignon’ and V. riparia plants were scanned using Synchrotron-based HRCT, characterizing their vulnerability to embolism and quantifying their ability to refill at different positions along the plant axis (base and apex) in relation to bulk xylem pressure. These data were integrated with other noninvasive techniques assessing leaf hydraulics and transpiration.     

Investigations Concerning Cavitation and Frost Fatigue in Clonal 84K Poplar Using High-Resolution Cavitron Measurements

Both drought and freezing-thawing of stems induce a loss of hydraulic conductivity (percentage loss of conductivity [PLC]) in woody plants. Drought-induced PLC is often accompanied by physical damage to pit membranes, causing a shift in vulnerability curves (cavitation fatigue). Hence, if cavitated stems are flushed to remove embolisms, the next vulnerability curve is different (shifted to lower tensions). The 84K poplar (Populus alba × Populus glandulosa) clone has small vessels that should be immune from frost-induced PLC, but results demonstrated that freezing-thawing in combination with tension synergistically increased PLC. Frost fatigue has already been defined, which is similar to cavitation fatigue but induced by freezing. Frost fatigue caused a transition from a single to a dual Weibull curve, but drought-fatigued stems had single Weibull curves shifted to lower tensions. Studying the combined impact of tension plus freezing on fatigue provided evidence that the mechanism of frost fatigue may be the extra water tension induced by freezing or thawing while spinning stems in a centrifuge rather than direct ice damage. A hypothesis is advanced that tension is enhanced as ice crystals grow or melt during the freeze or thaw event, respectively, causing a nearly identical fatigue event to that induced by drought.Water transport in xylem conduits of trees occurs while water is under tension (negative pressure; Tyree and Zimmermann, 2002). The xylem water-transport system is vulnerable to cavitation and embolism because tensile water is metastable, so if a gas bubble appears in a conduit it will rapidly expand to fill the conduit whenever the fluid tension is 0.1 MPa or greater, where a tension of 0.1 MPa is equivalent to vacuum pressure. A cavitation event occurs whenever a tensile water column breaks, which results in a water vapor-filled void. Because of Henry’s law of gas solubility in water, this vapor void will eventually equilibrate with air at atmospheric pressure, at which point the conduit is fully embolized (Tyree and Zimmermann, 2002). Embolism has been identified as a limiting factor of primary production (Hubbard et al., 2001). As a result, tree growth and fitness are probably negatively impacted temporarily or seriously limited permanently if embolism is extensive (Christensen-Dalsgaard and Tyree, 2013).The two main factors causing cavitation and embolism are drought and frost (Mayr et al., 2003; Christensen-Dalsgaard and Tyree, 2013). Drought-induced cavitation is caused by the high xylem tension attributed to water stress. The high tension in the sap forces air bubbles into functional conduits from neighboring embolized ones through shared pit membranes (Jarbeau et al., 1995; Sperry et al., 1996; Hacke et al., 2001; Stiller and Sperry, 2002; Christman et al., 2012) according to an air-seeding mechanism (Sperry and Tyree, 1988; Cochard et al., 1992). Hence, the continuity of water flow is disrupted due to cavitation. Frost-induced cavitation, on the other hand, occurs when dissolved gases in the sap freeze out and create bubbles during ice formation because air is not soluble in ice (Mayr et al., 2003; Christensen-Dalsgaard and Tyree, 2013, 2014) but remains entrapped between ice crystals. Once the sap melts and tension is regenerated, the entrapped bubbles may expand to embolize the conduits instead of dissolving (Pittermann and Sperry, 2006). Current thinking is that freezing-induced embolism occurs when the tension exceeds a critical value determined by the surface tension of the bubbles, which mainly depends on the xylem water potential and the bubble radius (Yang and Tyree, 1992; Tyree et al., 1994; Hacke and Sperry, 2001). Larger bubbles may form in conduits with a larger diameter, so species with larger conduits are more vulnerable to frost-induced embolism (Langan et al., 1997; Davis et al., 1999; Pittermann and Sperry, 2006). Furthermore, enhanced loss of hydraulic conductivity (K_h) of trees may occur when stems are subjected to a combination of frost and drought causing low xylem water potential (Mayr et al., 2003; Willson and Jackson, 2006) and repeated freeze-thaw cycles (Sperry and Sullivan, 1992; Cox and Zhu, 2003; Mayr et al., 2003). However, even trees with small conduits are found to suffer severe embolism in winter (Sperry et al., 1988; Améglio et al., 2002) due mostly to freezing-drying of stems.Resilient species are those that suffer no significantly different cavitation resistance before and after a cavitation-refilling cycle (Hacke et al., 2001; Christensen-Dalsgaard and Tyree, 2013). In contrast, species that are weakened by cavitation or frost are said to suffer cavitation fatigue or frost fatigue. Cavitation or frost fatigue is quantified by how much the vulnerability curve is shifted before versus after a fatigue-inducing event, and it is typically reported as a shift in P₅₀, which is either the pressure (negative value) or tension (positive value) that produces 50% loss of K_h. In the rest of this article, we will use T₅₀ to indicate the tension at 50% loss of conductivity or T_x to indicate the tension that induces x% loss of conductivity. Vulnerability curves (VCs) are usually measured by a centrifuge technique (Alder et al., 1997; Cochard et al., 2005), but most researchers measure just five or six points to determine a VC. High-resolution VC curves with nine to 27 points per curve can be collected quickly using the Cochard rotor. Recent studies have successfully used high-resolution VC to characterize the detailed shape of VCs, revealing dual Weibull curves (e.g. r- and s-shaped or dual s-shaped curves; Cai et al., 2014; Wang et al., 2014a) because a complex shape to a VC cannot be identified with just a few points. Furthermore, we used a centrifuge to induce tension while simultaneously freezing in order to study the combined impact of tension and freezing-thawing on frost fatigue and freeze-thaw-induced embolism.In this article, we intend to investigate whether drought and freeze-thaw cycles could have an effect on the cavitation resistance in terminal shoots from adult trees of 84K poplar (Populus alba × Populus glandulosa), with high-resolution analysis of VCs and an artificial freeze-thaw simulation technique. Populus spp. are known to be water-demanding, drought-sensitive species with T₅₀ ranging from 1.07 to 2.5 MPa (Fichot et al., 2015) and vulnerable to winter damage (Feng et al., 2010). Among poplars, 84K poplar is known by foresters to be relatively resistant to water stress, low temperature, diseases, and insects (Zhou et al., 2007). As the main afforestation species in Shaanxi, Gansu, and Qinghai Province, 84K poplar is of great ecological importance.     

Focus Issue on Calcium Signaling: Identification of Cyclic GMP-Activated Nonselective Ca2+-Permeable Cation Channels and Associated CNGC5 and CNGC6 Genes in Arabidopsis Guard Cells

Cytosolic Ca²⁺ in guard cells plays an important role in stomatal movement responses to environmental stimuli. These cytosolic Ca²⁺ increases result from Ca²⁺ influx through Ca²⁺-permeable channels in the plasma membrane and Ca²⁺ release from intracellular organelles in guard cells. However, the genes encoding defined plasma membrane Ca²⁺-permeable channel activity remain unknown in guard cells and, with some exceptions, largely unknown in higher plant cells. Here, we report the identification of two Arabidopsis (Arabidopsis thaliana) cation channel genes, CNGC5 and CNGC6, that are highly expressed in guard cells. Cytosolic application of cyclic GMP (cGMP) and extracellularly applied membrane-permeable 8-Bromoguanosine 3′,5′-cyclic monophosphate-cGMP both activated hyperpolarization-induced inward-conducting currents in wild-type guard cells using Mg²⁺ as the main charge carrier. The cGMP-activated currents were strongly blocked by lanthanum and gadolinium and also conducted Ba²⁺, Ca²⁺, and Na⁺ ions. cngc5 cngc6 double mutant guard cells exhibited dramatically impaired cGMP-activated currents. In contrast, mutations in CNGC1, CNGC2, and CNGC20 did not disrupt these cGMP-activated currents. The yellow fluorescent protein-CNGC5 and yellow fluorescent protein-CNGC6 proteins localize in the cell periphery. Cyclic AMP activated modest inward currents in both wild-type and cngc5cngc6 mutant guard cells. Moreover, cngc5 cngc6 double mutant guard cells exhibited functional abscisic acid (ABA)-activated hyperpolarization-dependent Ca²⁺-permeable cation channel currents, intact ABA-induced stomatal closing responses, and whole-plant stomatal conductance responses to darkness and changes in CO₂ concentration. Furthermore, cGMP-activated currents remained intact in the growth controlled by abscisic acid2 and abscisic acid insensitive1 mutants. This research demonstrates that the CNGC5 and CNGC6 genes encode unique cGMP-activated nonselective Ca²⁺-permeable cation channels in the plasma membrane of Arabidopsis guard cells.Plants lose water via transpiration and take in CO₂ for photosynthesis through stomatal pores. Each stomatal pore is surrounded by two guard cells, and stomatal movements are driven by the change of turgor pressure in guard cells. The intracellular second messenger Ca²⁺ functions in guard cell signal transduction (Schroeder and Hagiwara, 1989; McAinsh et al., 1990; Webb et al., 1996; Grabov and Blatt, 1998; Allen et al., 1999; MacRobbie, 2000; Mori et al., 2006; Young et al., 2006; Siegel et al., 2009; Chen et al., 2010; Hubbard et al., 2012). Plasma membrane ion channel activity and gene expression in guard cells are finely regulated by the intracellular free calcium concentration ([Ca2+]_cyt; Schroeder and Hagiwara, 1989; Webb et al., 2001; Allen et al., 2002; Siegel et al., 2009; Kim et al., 2010; Stange et al., 2010). Ca²⁺-dependent protein kinases (CPKs) function as targets of the cytosolic Ca²⁺ signal, and several members of the CPK family have been shown to function in stimulus-induced stomatal closing, including the Arabidopsis (Arabidopsis thaliana) CPK3, CPK4, CPK6, CPK10, and CPK11 proteins (Mori et al., 2006; Zhu et al., 2007; Zou et al., 2010; Brandt et al., 2012; Hubbard et al., 2012). Further research found that several CPKs could activate the S-type anion channel SLAC1 in Xenopus laevis oocytes, including CPK21, CPK23, and CPK6 (Geiger et al., 2010; Brandt et al., 2012). At the same time, the Ca²⁺-independent protein kinase Open Stomata1 mediates stomatal closing and activates the S-type anion channel SLAC1 (Mustilli et al., 2002; Yoshida et al., 2002; Geiger et al., 2009; Lee et al., 2009; Xue et al., 2011), indicating that both Ca²⁺-dependent and Ca²⁺-independent pathways function in guard cells.Multiple essential factors of guard cell abscisic acid (ABA) signal transduction function in the regulation of Ca²⁺-permeable channels and [Ca2+]_cyt elevations, including Abscisic Acid Insensitive1 (ABI1), ABI2, Enhanced Response to Abscisic Acid1 (ERA1), the NADPH oxidases AtrbohD and AtrbohF, the Guard Cell Hydrogen Peroxide-Resistant1 (GHR1) receptor kinase, as well as the Ca²⁺-activated CPK6 protein kinase (Pei et al., 1998; Allen et al., 1999, 2002; Kwak et al., 2003; Miao et al., 2006; Mori et al., 2006; Hua et al., 2012). [Ca2+]_cyt increases result from both Ca²⁺ release from intracellular Ca²⁺ stores (McAinsh et al., 1992) and Ca²⁺ influx across the plasma membrane (Hamilton et al., 2000; Pei et al., 2000; Murata et al., 2001; Kwak et al., 2003; Hua et al., 2012). Electrophysiological analyses have characterized nonselective Ca²⁺-permeable channel activity in the plasma membrane of guard cells (Schroeder and Hagiwara, 1990; Hamilton et al., 2000; Pei et al., 2000; Murata et al., 2001; Köhler and Blatt, 2002; Miao et al., 2006; Mori et al., 2006; Suh et al., 2007; Vahisalu et al., 2008; Hua et al., 2012). However, the genetic identities of Ca²⁺-permeable channels in the plasma membrane of guard cells have remained unknown despite over two decades of research on these channel activities.The Arabidopsis genome includes 20 genes encoding cyclic nucleotide-gated channel (CNGC) homologs and 20 genes encoding homologs to animal Glu receptor channels (Lacombe et al., 2001; Kaplan et al., 2007; Ward et al., 2009), which have been proposed to function in plant cells as cation channels (Schuurink et al., 1998; Arazi et al., 1999; Köhler et al., 1999). Recent research has demonstrated functions of specific Glu receptor channels in mediating Ca²⁺ channel activity (Michard et al., 2011; Vincill et al., 2012). Previous studies have shown cAMP activation of nonselective cation currents in guard cells (Lemtiri-Chlieh and Berkowitz, 2004; Ali et al., 2007). However, only a few studies have shown the disappearance of a defined plasma membrane Ca²⁺ channel activity in plants upon mutation of candidate Ca²⁺ channel genes (Ali et al., 2007; Michard et al., 2011; Laohavisit et al., 2012; Vincill et al., 2012). Some CNGCs have been found to be involved in cation nutrient intake, including monovalent cation intake (Guo et al., 2010; Caballero et al., 2012), salt tolerance (Guo et al., 2008; Kugler et al., 2009), programmed cell death and pathogen responses (Clough et al., 2000; Balagué et al., 2003; Urquhart et al., 2007; Abdel-Hamid et al., 2013), thermal sensing (Finka et al., 2012; Gao et al., 2012), and pollen tube growth (Chang et al., 2007; Frietsch et al., 2007; Tunc-Ozdemir et al., 2013a, 2013b). Direct in vivo disappearance of Ca²⁺ channel activity in cngc disruption mutants has been demonstrated in only a few cases thus far (Ali et al., 2007; Gao et al., 2012). In this research, we show that CNGC5 and CNGC6 are required for a cyclic GMP (cGMP)-activated nonselective Ca²⁺-permeable cation channel activity in the plasma membrane of Arabidopsis guard cells.     

A Member of the Heavy Metal P-Type ATPase OsHMA5 Is Involved in Xylem Loading of Copper in Rice

Heavy metal-transporting P-type ATPase (HMA) has been implicated in the transport of heavy metals in plants. Here, we report the function and role of an uncharacterized member of HMA, OsHMA5 in rice (Oryza sativa). Knockout of OsHMA5 resulted in a decreased copper (Cu) concentration in the shoots but an increased Cu concentration in the roots at the vegetative stage. At the reproductive stage, the concentration of Cu in the brown rice was significantly lower in the mutants than in the wild-type rice; however, there was no difference in the concentrations of iron, manganese, and zinc between two independent mutants and the wild type. The Cu concentration of xylem sap was lower in the mutants than in the wild-type rice. OsHMA5 was mainly expressed in the roots at the vegetative stage but also in nodes, peduncle, rachis, and husk at the reproductive stage. The expression was up-regulated by excess Cu but not by the deficiency of Cu and other metals, including zinc, iron, and manganese, at the vegetative stage. Analysis of the transgenic rice carrying the OsHMA5 promoter fused with green fluorescent protein revealed that it was localized at the root pericycle cells and xylem region of diffuse vascular bundles in node I, vascular tissues of peduncle, rachis, and husk. Furthermore, immunostaining with an antibody against OsHMA5 revealed that it was localized to the plasma membrane. Expression of OsHMA5 in a Cu transport-defective mutant yeast (Saccharomyces cerevisiae) strain restored the growth. Taken together, OsHMA5 is involved in loading Cu to the xylem of the roots and other organs.Plants require nutrient elements to maintain normal growth and development. A number of different transporters, such as Cation Diffusion Facilitator, Natural resistance-associated macrophage protein, ATP-Binding Cassette, Zinc- and Iron-regulated-like Protein, and P-type ATPase, have been reported to be involved in the uptake, translocation, distribution, and homeostasis of nutrients (Hall and Williams, 2003; Krämer et al., 2007; Palmer and Guerinot, 2009). Among them, heavy metal-transporting P-type ATPase (HMA), the P_1B subfamily of the P-type ATPase superfamily, has been implicated in heavy metal transport (Williams and Mills, 2005; Grotz and Guerinot, 2006; Argüello et al., 2007; Burkhead et al., 2009). There are eight and nine members of P_1B-ATPase in Arabidopsis thaliana and rice (Oryza sativa), respectively (Williams and Mills, 2005). They are divided into two groups: zinc (Zn)/cadmium (Cd)/cobalt/lead (Pb) and copper (Cu)/silver transporters (Williams and Mills, 2005). AtHMA1 to AtHMA4 in A. thaliana and OsHMA1 to OsHMA3 in rice belong to the former group, while AtHMA5 to AtHMA8 and OsHMA4 to OsHMA9 belong to the latter group, although AtHMA1 has also been shown to transport Zn, Cu, and calcium (Axelsen and Palmgren, 2001; Williams and Mills, 2005; Seigneurin-Berny et al., 2006; Moreno et al., 2008; Kim et al., 2009).All members of HMAs in A. thaliana have been functionally characterized. AtHMA1 is involved in delivering Cu to the stroma, exporting Zn²⁺ from the chloroplast, or as a Ca²⁺/heavy metal transporter to the intracellular organelle (Seigneurin-Berny et al., 2006; Moreno et al., 2008; Kim et al., 2009). AtHMA2 and AtHMA4 localized at the pericycle are partially redundant and responsible for the release of Zn into the xylem (xylem loading) as well as Cd (Hussain et al., 2004; Verret et al., 2004; Wong and Cobbett, 2009; Wong et al., 2009), while AtHMA3 localized at the tonoplast plays a role in the detoxification of Zn/Cd/cobalt/Pb by mediating them into the vacuole (Morel et al., 2009; Chao et al., 2012). On the other hand, AtHMA5 is involved in the Cu translocation from roots to shoots or Cu detoxification of roots (Andrés-Colás et al., 2006; Kobayashi et al., 2008). AtHMA6 (PAA1, for P-type ATPase of Arabidopsis1) localized at the chloroplast periphery has been proposed to transport Cu over the chloroplast envelope, whereas AtHMA8 (PAA2) localized at the thylakoid membranes most likely transports Cu into the thylakoid lumen to supply plastocyanin (Shikanai et al., 2003; Abdel-Ghany et al., 2005). Finally, AtHMA7 (RESPONSIVE-TO-ANTAGONIST1) is responsible for delivering Cu to ethylene receptors and Cu homeostasis in the seedlings (Hirayama et al., 1999; Woeste and Kieber, 2000; Binder et al., 2010).By contrast, only three out of nine P-type ATPase members have been functionally characterized in rice. OsHMA2 was recently reported to be involved in the root-shoot translocation of Zn and Cd (Satoh-Nagasawa et al., 2012; Takahashi et al., 2012; Yamaji et al., 2013). Furthermore, OsHMA2 at the node is required for preferential distribution of Zn to young leaves and panicles (Yamaji et al., 2013). OsHMA3 is localized to the tonoplast of the root cells and responsible for the sequestration of Cd into the vacuoles (Ueno et al., 2010; Miyadate et al., 2011). On the other hand, OsHMA9 was mainly expressed in vascular tissues, including the xylem and phloem (Lee et al., 2007). The knockout lines accumulated more Zn, Cu, Pb, and Cd, suggesting its role in the efflux of these metals from the cells (Lee et al., 2007).Some members of P-type ATPase have also been identified in other plant species, including barley (Hordeum vulgare), wheat (Triticum aestivum), Thlaspi caerulescens (Noccaea caerulescens), and Arabidopsis halleri. HvHMA1 from barley might be involved in mobilizing Zn and Cu during the stage of grain filling (Mikkelsen et al., 2012). HvHMA2 from barley and TaHMA2 from wheat showed similar functions as OsHMA2 in rice (Mills et al., 2012; Tan et al., 2013). AhHMA3 in A. halleri, a Zn hyperaccumulator, is probably involved in high Zn accumulation (Becher et al., 2004; Chiang et al., 2006). Furthermore, AhHMA4 for Zn translocation showed a higher expression level (Chiang et al., 2006; Hanikenne et al., 2008). On the other hand, TcHMA3 from ecotype Ganges of T. caerulescens, a Cd hyperaccumulator, plays an important role in the detoxification of Cd by sequestering Cd into the vacuole of the leaves (Ueno et al., 2011). High expression of TcHMA4 (NcHMA4) was also reported in T. caerulescens (Bernard et al., 2004; Papoyan and Kochian, 2004; Craciun et al., 2012).In this study, we investigated the function and role of an uncharacterized member of P-type ATPase in rice, OsHMA5. We found that OsHMA5 is involved in the xylem loading of Cu at both the vegetative and reproductive growth stages.