Decomposition Odour Profiling in the Air and Soil Surrounding Vertebrate Carrion

Chemical profiling of decomposition odour is conducted in the environmental sciences to detect malodourous target sources in air, water or soil. More recently decomposition odour profiling has been employed in the forensic sciences to generate a profile of the volatile organic compounds (VOCs) produced by decomposed remains. The chemical profile of decomposition odour is still being debated with variations in the VOC profile attributed to the sample collection technique, method of chemical analysis, and environment in which decomposition occurred. To date, little consideration has been given to the partitioning of odour between different matrices and the impact this has on developing an accurate VOC profile. The purpose of this research was to investigate the decomposition odour profile surrounding vertebrate carrion to determine how VOCs partition between soil and air. Four pig carcasses (Sus scrofa domesticus L.) were placed on a soil surface to decompose naturally and their odour profile monitored over a period of two months. Corresponding control sites were also monitored to determine the VOC profile of the surrounding environment. Samples were collected from the soil below and the air (headspace) above the decomposed remains using sorbent tubes and analysed using gas chromatography-mass spectrometry. A total of 249 compounds were identified but only 58 compounds were common to both air and soil samples. This study has demonstrated that soil and air samples produce distinct subsets of VOCs that contribute to the overall decomposition odour. Sample collection from only one matrix will reduce the likelihood of detecting the complete spectrum of VOCs, which further confounds the issue of determining a complete and accurate decomposition odour profile. Confirmation of this profile will enhance the performance of cadaver-detection dogs that are tasked with detecting decomposition odour in both soil and air to locate victim remains.     

DNA鉴定技术在法科学中的应用

人类基因组遗传多态现象研究的深入,导致了法科学领域个体识别和亲权鉴定发生根本性变化。本就新的遗传标记和各种DNA鉴定技术在法科学中的研究进展,应用前景与亟待解决的问题进行了探讨。     

Enhanced characterization of the smell of death by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GCxGC-TOFMS)

Soon after death, the decay process of mammalian soft tissues begins and leads to the release of cadaveric volatile compounds in the surrounding environment. The study of postmortem decomposition products is an emerging field of study in forensic science. However, a better knowledge of the smell of death and its volatile constituents may have many applications in forensic sciences. Domestic pigs are the most widely used human body analogues in forensic experiments, mainly due to ethical restrictions. Indeed, decomposition trials on human corpses are restricted in many countries worldwide. This article reports on the use of comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry (GCxGC-TOFMS) for thanatochemistry applications. A total of 832 VOCs released by a decaying pig carcass in terrestrial ecosystem, i.e. a forest biotope, were identified by GCxGC-TOFMS. These postmortem compounds belong to many kinds of chemical class, mainly oxygen compounds (alcohols, acids, ketones, aldehydes, esters), sulfur and nitrogen compounds, aromatic compounds such as phenolic molecules and hydrocarbons. The use of GCxGC-TOFMS in study of postmortem volatile compounds instead of conventional GC-MS was successful.     

An XML message broker framework for exchange and integration of microarray data

MOTIVATION: Microarrays are an important research tool for the advancement of basic biological sciences. However this technology has yet to be integrated with clinical decision making. We have implemented an information framework based on the Microarray Gene Expression Markup Language (MAGE-ML) specification. We are using this framework to develop a test-bed integrated database application to identify genomic and imaging markers for diagnosis of breast cancer. RESULTS: We developed extensible software architecture for retrieving data from different microarray databases using MAGE-ML and for combining microarray data with breast cancer image analysis and clinical data for correlation studies. The framework we developed will provide the necessary data integration to move microarray research from basic biological sciences to clinical applications. AVAILABILITY: Open source software will be available from SourceForge (http://sourceforge.net/projects/microsoap/).     

我国嗜尸性蝇类的鉴别、发育及演替研究现状与分析

嗜尸性蝇类是法医昆虫学调查中最重要的目标,作为早期到达尸体并主要促成尸体组织腐解的昆虫,对死亡时间的推断,特别是腐败尸体死亡时间的推断具有重大意义。本文针对我国嗜尸性蝇类的主要种类及形态识别、各种类生长发育、在尸体上的演替进行了综述。     

Forensic cultures in historical perspective: Technologies of witness,testimony, judgment (and justice?)

This article explores the history of forensic science in terms of ideologies and institutions rather than developing technique. It presents an analytical framework for characterising forensic institutions and practices, past and present. That framework highlights the distinct issues of means of witness, accredited testimony, and the reaching of juridical decisions. The article applies the framework by comparing four forensic ‘formations,’ (or ‘cultures’) which have been prominent at various times and places in the western world from the early modern period onward: these are the central European heritage of the Caroline code, a eugenically-oriented forensic enterprise of late nineteenth-century America, the forensic perspective in nineteenth-century British India, and the representation of forensic certainty in contemporary American popular culture. The article concludes with a critique of what seems an increasingly common expectation: that forensic science evolves independently of legal institutions, and can ultimately displace them.     

The forensic analysis of foodborne bacterial pathogens in the age of whole‐genome sequencing

The forensic evaluation of bacterial pathogens presents new challenges to the forensic science community. This review examines bacterial pathogens as objects of forensic comparison, focusing on their nucleic acid sequences as an important aspect of the comparison process. Because of the clonal propagation of most bacterial pathogens, a phylogenetic approach to understanding the diversity and using this understanding to address common forensic questions is explored. As a general phylogenetic framework is now employed in human mitochondrial DNA analysis, we will use the relevant concepts and approaches common in this area to develop this approach further. We also address the impact of the current ease and prevalence of whole‐genome DNA sequence analysis in the forensic comparison process.     

Moral considerations in body donation for scientific research: a unique look at the University of Tennessee's anthropological research facility

This paper discusses keys to the moral procurement, treatment and disposition of remains used for scientific research, specifically those donated to the University of Tennessee's Anthropological Research Facility (ARF). The ARF is an outdoor laboratory dedicated to better understanding the fate of human remains in forensic contexts, and focuses its research on decomposition, time since death estimates, body location and recovery techniques, and skeletal analysis. Historically, many donations were unclaimed bodies received from medical examiners (although it will be shown that this trend is changing), and it has been argued that the use of the unclaimed bodies for medical or scientific purposes is a violation of autonomy since no consent was given by the individual. It is argued here, however, that the domain of autonomous choice extends to one's own corpse only insofar as expressed wishes are made known prior to one's death, and that in the absence of expressed intent toward final disposition, it is acceptable for institutions to receive donations from medical examiners or family members. This paper also discusses other philosophical issues related to donation, consent and autonomy, and the forensic benefits of research conducted at the Anthropological Research Facility.     

Can freshwater mites act as forensic tools?

Determination of post-mortem interval often employs analysis of age structure and diversity of saprophilic arthropods (including mites) that have colonized corpses. The majority of research has focused on decomposition processes in terrestrial situations, with relatively few studies on the utility of freshwater invertebrates as forensic agents. Most freshwater mites are predators, detritivores or algivores, and hence seem unlikely candidates as tools for aging or determining original placement of corpses or other bodily remains. The main exceptions to this are some aquatic Astigmata, which have occasionally been observed feeding on the tissues of moribund aquatic animals. Here I investigate Canadian law literature and published forensic research to determine how frequently freshwater mites are included in court cases or are found attending dead bodies. I found only one questionable report of aquatic mites in over 30 years of material from legal databases. Three published research papers reported mites associated with vertebrate flesh in fresh water. Only one paper provided an identification of mites finer than ‘Acari’ or ‘water mites’. In this case, the mites were identified as Hydrozetes (Oribatida). In none of these papers were mites reported to be high in abundance or biomass, and in two of the three publications methodological problems and/or poor reporting of data raised doubts about interpretation of results. I conclude that based on their biology, there is little expectation that freshwater mites should be of great value as forensic tools, and this survey of legal and scientific literature supports my argument.     

Phenomics: conceptualization and importance for plant physiology

Phenomics is a relatively new discipline of biology that has been widely applied in several fields, mainly in crop sciences. We reviewed the concepts used in this discipline (particularly for plants) and found a lack of consensus on what defines a phenomic study. Furthermore, phenomics has been primarily developed around its technical aspects (operationalization), while the conceptual framework of the actual research lags behind. Each research group has given its own interpretation of this ‘omic’ and thus unwittingly created a ‘conceptual controversy’. Addressing this issue is of particular importance, as the experimental designs and concepts of phenomics are so diverse that it is difficult to compare studies. In this opinion article, we evaluate the conceptual framework of phenomics     

Sewall wright meets artificial life: the origin and maintenance of evolutionary novelty

A decade ago, Langton coined the term Artificial Life (A-Life) to identify the new field of research that is attempting to create and characterize open-ended evolving systems using diverse computer-based methods. Fruitful interactions between A-Life research and that of conventional biological sciences (B-Life) are rare. Using the framework of molecular and evolutionary genetics, we discuss some of the reasons for this lack of conceptual cross-pollination between the disciplines and we identify some potential areas for interdisciplinary collaboration.     

11例吸毒死亡法医学鉴定回顾性研究分析

目的：奉文时吸毒及体内藏毒死亡法医学尸体检验与鉴定中的相关问题进行回顾性研究。强调该类法医学鉴定中应该特别注意的问题。方法：将2003年初至2006年底昆明市及周边地区11例吸毒死亡法医学鏊定案例进行回顾性研究分析,同时对毒品作用机理、死亡原因、吸毒流行病学特征、吸毒死亡者的病理组织学特征、体内藏毒死亡特征、吸毒死亡法医学尸体检验与鉴定应注意的问题等进行论述。结果：吸毒或体内藏毒死亡的法医学尸体检验与鉴定具有一定的形态学特征,吸毒死亡法医学检验与鉴定工作具有相当的难度。结论：吸毒及体内藏毒死亡法医学尸体检验与鉴定,必须在充分进行尸体剖验的基础上并结合毒物检验、现场勘验、案情调查、临床表现和死亡经过等资料进行充分的案情研究并排除其他原因致死,才能得出正确的结论。     

我国生物多样性保护自然-社会科学交叉融合与发展

保护科学前沿研究重视克服单一学科的局限而向超越自然科学和社会科学跨学科交叉融合转型。基于世界自然保护联盟-世界保护区委员会(IUCN-WCPA)自然保护地管理有效性框架,从规划制定、执行和评估三个方面系统梳理了我国保护科学的研究进展,分析了保护自然科学和社会科学在研究内容、方法和视角等方面的差异,识别出潜在的跨学科综合研究领域。结果表明,我国保护自然科学与社会科学研究大多相互独立、缺乏融合协作,少有的跨学科研究在整体性、系统性、兼容性、深入性和规范性上有待提高。自然科学家在介入社会科学研究时缺乏对现实制度的科学理解,所提出的保护政策和行动建议偏向理想主义,阻碍保护科学跨学科知识生产;社会科学家则缺乏自然科学方法和数据的知识积累,所提出的政策和行动建议脱离事实和证据,偏向主观主义,不利于保护科学知识进步。为此,构建了基于自然保护地适应性管理逻辑下的保护科学跨学科整合框架,以推动保护科学共同话语的形成,实现社会与生态的耦合协调发展。     

Refining decomposition stage estimation: A study of seasonal insect composition and carcass weight change

In this study, we explore the interplay of seasonal insect assemblages and carcass weight change to refine the estimation of minimum post-mortem interval (PMI_min), a key variable in forensic investigations. By integrating these parameters, we shed light on their combined influence on decomposition stages, thus paving the way for a more robust method of PMI_min estimation. Our approach relies on rigorous field studies examining pig carcasses across spring, summer and autumn, with comprehensive measurements of carcass weight and detailed documentation of insect succession. We observed distinct insect assemblages and weight-change trends characteristic of each season, underlining the influence of seasonal variability on decomposition dynamics. To further enhance the reliability of our model, we combined the novel parameter of carcass weight change with the conventional total body score (TBS) method, ensuring a more objective assessment of decomposition stages. Although our study indicates promising advancements, it also acknowledges the limitations of using a single pig carcass per season, suggesting future research should incorporate larger sample sizes.     

Opportunities and challenges for the life sciences community

Twenty-first century life sciences have transformed into data-enabled (also called data-intensive, data-driven, or big data) sciences. They principally depend on data-, computation-, and instrumentation-intensive approaches to seek comprehensive understanding of complex biological processes and systems (e.g., ecosystems, complex diseases, environmental, and health challenges). Federal agencies including the National Science Foundation (NSF) have played and continue to play an exceptional leadership role by innovatively addressing the challenges of data-enabled life sciences. Yet even more is required not only to keep up with the current developments, but also to pro-actively enable future research needs. Straightforward access to data, computing, and analysis resources will enable true democratization of research competitions; thus investigators will compete based on the merits and broader impact of their ideas and approaches rather than on the scale of their institutional resources. This is the Final Report for Data-Intensive Science Workshops DISW1 and DISW2. The first NSF-funded Data Intensive Science Workshop (DISW1, Seattle, WA, September 19-20, 2010) overviewed the status of the data-enabled life sciences and identified their challenges and opportunities. This served as a baseline for the second NSF-funded DIS workshop (DISW2, Washington, DC, May 16-17, 2011). Based on the findings of DISW2 the following overarching recommendation to the NSF was proposed: establish a community alliance to be the voice and framework of the data-enabled life sciences. After this Final Report was finished, Data-Enabled Life Sciences Alliance (DELSA, www.delsall.org ) was formed to become a Digital Commons for the life sciences community.     

Learning from clinical medicine to improve the use of surrogates in ecology

Surrogates are used widely in ecology to detect or monitor changes in the environment that are too difficult or costly to assess directly. Yet most work on surrogates to date has been correlative, with little work on their predictive capacity or the circumstances under which they work. Our suggestion is to revisit and learn from research in the clinical medical sciences, including the causal statistical frameworks available to validate relationships between treatments, surrogate variables, and the outcome of interest. We adapt this medical thinking to ecology by providing a new framework that involves specification of the surrogate model, statistical validation, and subsequent evaluation in a range of spatial and temporal contexts. An inter‐disciplinary surrogate concept will allow for a more rigorous approach to validating and evaluating proxy variables, thus advancing the selection and application of surrogates in ecology. Synthesis We draw together ideas from the medical sciences to define an explicit surrogate concept that has not previously been used in ecology. We present a new framework for specifying surrogate models involving validation using a causal framework, and subsequent re‐evaluation in different spatial and temporal contexts – an approach closely aligned with that used by researchers in the clinical medical sciences. This rigorous method can advance the science underpinning the application of surrogates in ecology by shifting the focus away from correlative understanding to one that focuses instead on causation and prediction. An improved use of surrogates is imperative if we are to meet the challenge of properly measuring and understanding the multifarious and complex problems in contemporary ecology.     

Decomposition and dipteran succession in pig carrion in central Argentina: ecological aspects and their importance in forensic science

Data on the insect species associated with corpse decomposition are particularly important for estimation of the post-mortem interval (PMI) in forensic science because the PMI is based on the lifecycle and behaviour of necrophagous insects, among other measures. To determine the dipteran succession on pig carrion, four experiments, one in each season, were carried out during 2004 in a rural area of Córdoba, central Argentina. Two pigs ( Sus scrofa L.) were used in each of the four experiments. At each time-point one pig was placed in the shade and the other under direct sunlight. Insects were collected daily during the first 4 weeks and thereafter every 2 or 3 days. Five stages of decomposition were observed and a total of 24 710 adult specimens were collected, belonging to the following eight families of Diptera: Calliphoridae; Muscidae; Sarcophagidae; Phoridae; Piophilidae; Fanniidae; Sphaeroceridae, and Anthomyiidae. All Calliphoridae collected in this study were considered to be of potential forensic importance because of their necrophagous behaviour and because their immature stages use carrion as a food source. Other species, such as Musca domestica L. and Ophyra aenescens (Wiedemann), were also considered to represent potential forensic indicators.     

Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network

New ‘omics’ technologies are changing nutritional sciences research. They enable to tackle increasingly complex questions but also increase the need for collaboration between research groups. An important challenge for successful collaboration is the management and structured exchange of information that accompanies data-intense technologies. NuGO, the European Nutrigenomics Organization, the major collaborating network in molecular nutritional sciences, is supporting the application of modern information technologies in this area. We have developed and implemented a concept for data management and computing infrastructure that supports collaboration between nutrigenomics researchers. The system fills the gap between “private” storing with occasional file sharing by email and the use of centralized databases. It provides flexible tools to share data, also during experiments, while preserving ownership. The NuGO Information Network is a decentral, distributed system for data exchange based on standard web technology. Secure access to data, maintained by the individual researcher, is enabled by web services based on the the BioMoby framework. A central directory provides information about available web services. The flexibility of the infrastructure allows a wide variety of services for data processing and integration by combining several web services, including public services. Therefore, this integrated information system is suited for other research collaborations.     

Sex determination using the scapula in medieval skeletons from East Anatolia

Sex determination from skeletal human remains by discriminant function analysis is one of the methods utilized in the forensic and osteoarcheological sciences. The purpose of the present study is to establish metric standards for sex determination for medieval Anatolian populations using scapular measurements. The database for this research consisted of 93 adult skeletal remains (47 males and 46 females) from the Dilkaya medieval collection. Four measurements were taken: maximum scapular height, maximum scapular breadth, glenoid cavity height, glenoid cavity breadth, and subjected to discriminant function analysis. All measurements demonstrated some degree of sexual dimorphism, with the highest accuracy of sex determination (94.8%) obtained using maximum scapular breadth. Overall accuracies of the functions ranged from 82.9% to 95.0%, with a higher accuracy rate obtained for female skeletons than for males. Population specific discriminant formulas were developed using combinations of measurements, which can be used in ancient Anatolian populations.     

Hallucination,imagery, dreaming: reassembling stimulus-independent perceptions based on Edmund Parish's classic misperception framework

Within the broad field of human perception lies the category of stimulus-independent perceptions, which draws together experiences such as hallucinations, mental imagery and dreams. Traditional divisions between medical and psychological sciences have contributed to these experiences being investigated separately. This review aims to examine their similarities and differences at the levels of phenomenology and underlying brain function and thus reassemble them within a common framework. Using Edmund Parish''s historical work as a guiding tool and the latest research findings in the cognitive, clinical and computational sciences, we consider how different perspectives may be reconciled and help generate novel hypotheses for future research.This article is part of the theme issue ‘Offline perception: voluntary and spontaneous perceptual experiences without matching external stimulation’.