The search for life on Earth and other planets

As the NASA rover Curiosity approaches Mars on its quest to look for signs of past or present life there and sophisticated instruments like the space telescopes Kepler and CoRoT keep discovering additional, more Earth-like planets orbiting distant stars, science faces the question of how to spot life on other planets. Even here on Earth biotopes remain to be discovered and explored.     

The Most Conserved Genome Segments for Life Detection on Earth and Other Planets

On Earth, very simple but powerful methods to detect and classify broad taxa of life by the polymerase chain reaction (PCR) are now standard practice. Using DNA primers corresponding to the 16S ribosomal RNA gene, one can survey a sample from any environment for its microbial inhabitants. Due to massive meteoritic exchange between Earth and Mars (as well as other planets), a reasonable case can be made for life on Mars or other planets to be related to life on Earth. In this case, the supremely sensitive technologies used to study life on Earth, including in extreme environments, can be applied to the search for life on other planets. Though the 16S gene has become the standard for life detection on Earth, no genome comparisons have established that the ribosomal genes are, in fact, the most conserved DNA segments across the kingdoms of life. We present here a computational comparison of full genomes from 13 diverse organisms from the Archaea, Bacteria, and Eucarya to identify genetic sequences conserved across the widest divisions of life. Our results identify the 16S and 23S ribosomal RNA genes as well as other universally conserved nucleotide sequences in genes encoding particular classes of transfer RNAs and within the nucleotide binding domains of ABC transporters as the most conserved DNA sequence segments across phylogeny. This set of sequences defines a core set of DNA regions that have changed the least over billions of years of evolution and provides a means to identify and classify divergent life, including ancestrally related life on other planets.     

Microbial life in glacial ice and implications for a cold origin of life

Application of physical and chemical concepts, complemented by studies of prokaryotes in ice cores and permafrost, has led to the present understanding of how microorganisms can metabolize at subfreezing temperatures on Earth and possibly on Mars and other cold planetary bodies. The habitats for life at subfreezing temperatures benefit from two unusual properties of ice. First, almost all ionic impurities are insoluble in the crystal structure of ice, which leads to a network of micron-diameter veins in which microorganisms may utilize ions for metabolism. Second, ice in contact with mineral surfaces develops a nanometre-thick film of unfrozen water that provides a second habitat that may allow microorganisms to extract energy from redox reactions with ions in the water film or ions in the mineral structure. On the early Earth and on icy planets, prebiotic molecules in veins in ice may have polymerized to RNA and polypeptides by virtue of the low water activity and high rate of encounter with each other in nearly one-dimensional trajectories in the veins. Prebiotic molecules may also have utilized grain surfaces to increase the rate of encounter and to exploit other physicochemical features of the surfaces.     

Aliens at home?

If we ponder how alien life might look like on other planets, we don''t have to go far, Simon Conway Morris argues, since life forms on Earth have already pushed life to the limits.When in 1609 Galileo first saw the moons of Jupiter, he must have been spellbound. I was certainly so enrapt when I saw Europa and her three companions strung like a line of jewels. Galileo may have appreciated the irony that my guide was a Jesuit priest, and the somewhat antiquated telescope we used was but a few yards from the Papal summer residence in Castel Gandolfo. Galileo prized open the door and before long, scientific imagination was fired by the prospect of innumerable inhabited worlds. As the centuries progressed, imagination raced ahead of facts, with the Moon optimistically colonized by Selenites, and Mars transformed by immense canals to supply the parched regions of a planet plunging into desertification. From this dying planet H.G. Wells propelled his aliens to terrorize southern England with immense tripods housing sinister octopoids.Now we might be closer to knowing if Wells was in any sense on the right track. The spectacular success in detecting extrasolar planets has produced a roster in excess of 450, and this technology potentially allows us to detect Earth-like planets. Even if many of the known planets are too large to be habitable and lie, for the most part, beyond the inferred ‘habitable zones'', before long we will get some clues as to how densely our galaxy is inhabited. The consensus points in two directions. First, life is a universal. Second, our biosphere will be of almost no use when it comes to comparisons. Let me draw your attention to a remarkably unappreciated fact: if you want to understand aliens, stay at home.Am I serious? After all it is already clear that extrasolar planetary systems are vastly different to our Solar System. Immense planets orbit their suns every few days, their surfaces far more torrid than that of Venus. Other planets most likely possess giant oceans, hundreds of kilometres deep. The diversity of moons and planets in our Solar System is a reminder of what may await us light years from Earth. Even among our neighbours, a case can be made for possible life in the clouds of Venus and Jupiter, the oceans of Europa and hydrocarbon lakes of Titan, and—with perennial optimism—in the permafrost of Mars. We might assume, therefore, that the range of environments available to life, its ‘habitation box'', is gigantic, and that Earth''s biosphere just nestles in one tiny corner. Oddly enough the evidence is exactly the opposite. Life on Earth has reached the limits of what is possible—anywhere.Temperature? The current limit on Earth is 122 °C. Plunging in the opposite direction the evidence is just as remarkable. At temperatures well below freezing, life carries on cheerfully. Even far beyond the eutectic, in which free water cannot form, organisms remain in a state of suspended animation with rates of damage and repair almost precisely matched. What of extreme desiccation? Evidently life has reached the limits of water activity. Entertainingly some of the hardiest forms are fungi that inhabit the weird alien world of Blue Stilton cheese. So, too, the bright colouration of salt pans is a familiar sight, and these osmotic extremes not only host rich microbial faunas but life that can flourish in the most bitter of brines. What of the extremes of pH—bleach versus battery acid? Once again, alkaliphiles and acidophiles disport themselves in ponds and streams that would have the Health and Safety officers in a state of panic. Pressure, either crushingly high or extremely attenuated? Life, of course, exists in the deepest oceanic trenches, but how much deeper might be viable? The weakest link seems to be the pressure sensitivity of the phospholipid membranes, suggesting that even on planets with titanic oceans life won''t survive much deeper than in the Mariana Trench. The same argument applies to the deep crust: at about 5 km the crushingly high pressures also coincide with the thermal limits imposed by the geothermal gradient. Shall we look to the skies? Clouds carry bacteria, but even at quite modest heights it seems to be accidental freight rather than a nebulous ecosystem.Terrestrial life has conquered nearly all of the ‘habitation box'' and its evolution begs so many questions. Are some forms, such as the hyperthermophiles, survivors from the Earth''s apocalyptic beginnings? Maybe, but most have clearly been reinvented several times. Getting to the limits of life isn''t that difficult, but how do extremophiles not only survive but flourish in these environments? Often the adaptations seem minor, which merely means they are more subtle than we might realize. What of the future? So far as the Earth is concerned it must cope with ever increasing solar luminosity: the last men will long predecease the last microbe. Possibly long before, we will engage in the first great galactic diaspora; but wherever our biologists journey they may find that life ‘out there'' got no further than the blue jewel that is Earth.     

地球熔岩管道微生物研究对天体生物学的启示

天体生物学作为与深空探测相结合的交叉学科,旨在从地球极端环境类比、古代生命载体信息发掘和模拟等方面揭示地外行星体是否适合生命生存和繁衍,其中适宜的环境条件是评价所有天体是否宜居的重要条件。近年来在月球和火星等行星表面发现了大量由火山熔岩流形成的熔岩管道,这些巨型管状地下空间具有稳定的温度和防辐射等环境条件,为生物在地外星体上的生存提供了潜在的庇护场所。基于地球熔岩管道的天体生物学的类比研究可以为探索地外生命痕迹提供重要线索,本文综述了现阶段地球熔岩管道内微生物的研究进展、微生物痕量气体代谢在天体生物学研究中的潜力及天体生物学的研究进展,旨在为后续开展地球及地外熔岩管道的天体生物学研究提供思路。     

Non-light based ecosystems and bioastronomy.

The possibility of the existence of life beyond planet Earth has always fascinated humans. However, due to certain circumstances such as the failure of the Viking expeditions to detect any sign of biotic activity on Mars, and the understanding that the presence of life would lead to drastic alterations in the atmosphere of the host planet (alterations that have never been detected on other planets or planetoids of the solar system), the belief that our planet is the only planet to sustain life inside the solar system originated. During the last three decades a series of new complex biological communities have been discovered, in the deep sea, inside caves isolated from the external biosphere, and deep inside the crust of our planet, and found to depend on geothermal energy instead of solar energy for their survival. These discoveries give us new evidence and hope that life might exist not only on other planets, but perhaps even in other planetoids of our solar system. Life may exist in regions other than the surface of a planet, and these areas would be extremely difficult to identify.     

Selective chemical degradation of silica sinters of the Taupo Volcanic Zone (New Zealand). Implications for early Earth and Astrobiology

Most organic matter (OM) on Earth occurs as kerogen‐like materials, that is naturally formed macromolecules insoluble with standard organic solvents. The formation of this insoluble organic matter (IOM) is a topic of much interest, especially when it limits the detection of compounds of geomicrobiological interest. For example, studies that search for biomarker evidence of life on early Earth or other planets usually use solvent‐based extractions. This leaves behind a pool of OM as unexplored post‐extraction residues, potentially containing diagnostic biomarkers. Since the IOM has an enhanced potential for preservation compared to soluble OM, analysing IOM‐released biomarkers can also provide even deeper insights into the ecology of ancient settings, with implications for early Earth and Astrobiology investigations. Here, we analyse the prokaryotic lipid biosignature within soluble and IOM of the Taupo Volcanic Zone (TVZ) silica sinters, which are key analogues in the search for life. We apply sequential solvent extractions and a selective chemical degradation upon the post‐solvent extraction residue. Moreover, we compare the IOM from TVZ sinters to analogous studies on peat and marine sediments to assess patterns in OM insolubilisation across the geosphere. Consistent with previous work, we find significant but variable proportions—1%–45% of the total prokaryotic lipids recovered—associated with IOM fractions. This occurs even in recently formed silica sinters, likely indicating inherent cell insolubility. Moreover, archaeal lipids seem more prone to insolubilisation as compared to the bacterial analogues, which might enhance their preservation and also bias overall biomarkers interpretation. These observations are similar to those observed in other settings, confirming that even in a setting where the OM derives predominantly from prokaryotic sources, patterns of IOM formation/occurrence are conserved. Differences with other settings, however, such as the occurrence of archaeol in IOM fractions, could be indicative of different mechanisms for IOM formation that merit further exploration.     

Cataclysm No More: New Views on the Timing and Delivery of Lunar Impactors

If properly interpreted, the impact record of the Moon, Earth’s nearest neighbour, can be used to gain insights into how the Earth has been influenced by impacting events since its formation ~4.5 billion years (Ga) ago. However, the nature and timing of the lunar impactors – and indeed the lunar impact record itself – are not well understood. Of particular interest are the ages of lunar impact basins and what they tell us about the proposed “lunar cataclysm” and/or the late heavy bombardment (LHB), and how this impact episode may have affected early life on Earth or other planets. Investigations of the lunar impactor population over time have been undertaken and include analyses of orbital data and images; lunar, terrestrial, and other planetary sample data; and dynamical modelling. Here, the existing information regarding the nature of the lunar impact record is reviewed and new interpretations are presented. Importantly, it is demonstrated that most evidence supports a prolonged lunar (and thus, terrestrial) bombardment from ~4.2 to 3.4 Ga and not a cataclysmic spike at ~3.9 Ga. Implications for the conditions required for the origin of life are addressed.     

Animal survival strategies in Neoproterozoic ice worlds

The timing of the first appearance of animals is of crucial importance for understanding the evolution of life on Earth. Although the fossil record places the earliest metazoans at 572–602 Ma, molecular clock studies suggest a far earlier origination, as far back as ~850 Ma. The difference in these dates would place the rise of animal life into a time period punctuated by multiple colossal, potentially global, glacial events. Although the two schools of thought debate the limitations of each other's methods, little time has been dedicated to how animal life might have survived if it did arise before or during these global glacial periods. The history of recent polar biota shows that organisms have found ways of persisting on and around the ice of the Antarctic continent throughout the Last Glacial Maximum (33–14 Ka), with some endemic species present before the breakup of Gondwana (180–23 Ma). Here we discuss the survival strategies and habitats of modern polar marine organisms in environments analogous to those that could have existed during Neoproterozoic glaciations. We discuss how, despite the apparent harshness of many ice covered, sub-zero, Antarctic marine habitats, animal life thrives on, in and under the ice. Ice dominated systems and processes make some local environments more habitable through water circulation, oxygenation, terrigenous nutrient input and novel habitats. We consider how the physical conditions of Neoproterozoic glaciations would likely have dramatically impacted conditions for potential life in the shallows and erased any possible fossil evidence from the continental shelves. The recent glacial cycle has driven the evolution of Antarctica's unique fauna by acting as a “diversity pump,” and the same could be true for the late Proterozoic and the evolution of animal life on Earth, and the existence of life elsewhere in the universe on icy worlds or moons.     

Life as a planetary phenomenon

The success of recent spacecraft from the U.S.A. and the U.S.S.R. has given us a wealth of new data about the planets in our solar system. We can now develop a much better rationale for the reasons that abundant life is only found on our planet. Mars, smaller and more distant from the Sun, may nevertheless hold clues to the early development of Earth's atmosphere. The origin of life on Mars early in that planet's history cannot be ruled out. Titan offers a contemporary example of extremely primitive conditions, where chemical reactions resembling those that preceded the development of life on Earth may be occurring today. Venus and Jupiter illustrate the need for a planet to be the right size and the right distance from the sun if chemical evolution leading to the origin of life is to occur.     

Consequences of the settlement of migrant European Robins Erithacus rubecula in wintering habitats occupied by conspecific residents

In wintering areas where migrant birds meet sedentary conspecifics, early settlement of local residents in the best habitat patches might reduce the availability of suitable sites for arriving migrants. We studied how sympatric migratory and sedentary European Robins Erithacus rubecula occupy two wintering habitats of different quality (forests and shrublands) in southern Spain, and how such a distribution affects individuals of each population sector. In September, before migrants arrived, Robins were only found in forests, and they had already saturated these habitats, so that rather than increasing Robin abundance in these habitats, the arrival of migrants caused a massive occupation of the previously vacant shrublands. During the winter, we captured Robins and identified them as migrants or residents using a discriminant function based on morphological traits. Residents always predominated in forests, and migrants in shrublands, but through the winter around 35% of residents (mainly juveniles) moved to shrublands, having been replaced by some migrants in forests. Although food was more abundant in shrublands, Robins had better body condition in forests, suggesting that other factors determined habitat preferences (e.g. shelter availability or food diversity, which were higher in forests). In addition, we observed a greater variance in body mass relative to body size in forests, suggesting that energy management was less constrained in this habitat (for example owing to a lower exposure to predators or a higher food predictability). Our results suggest that sedentary Robins benefit from an early occupation of the best habitats in the wintering grounds, forcing migrants to colonize apparently less suitable sites. This would explain the persistence of these small southern populations despite the yearly flooding of the area by huge numbers of migrant conspecifics.     

ultraviolet radiation from F and K stars and implications for planetary habitability

Now that extrasolar planets have been found, it is timely to ask whether some of them might be suitable for life. Climatic constraints on planetary habitability indicate that a reasonably wide habitable zone exists around main sequence stars with spectral types in the early-F to mid-K range. However, it has not been demonstrated that planets orbiting such stars would be habitable when biologically-damaging energetic radiation is also considered. The large amounts of UV radiation emitted by early-type stars have been suggested to pose a problem for evolving life in their vicinity. But one might also argue that the real problem lies with late-type stars, which emit proportionally less radiation at the short wavelengths ( < 200 nm) required to split O2 and initiate ozone formation. We show here that neither of these concerns is necessarily fatal to the evolution of advanced life: Earth-like planets orbiting F and K stars may well receive less harmful UV radiation at their surfaces than does the Earth itself.     

The beginning of comparative planetology

The study of the origin of life question is related to the comparative study of the planets in our solar systems and in fact the universe as a whole. Data relevant to the origin of life is being accumulated from the Earth, planets, stars and interstellar space. A variety of spacecraft and Earth based techniques are being used to provide this data.Based on a lecture presented at the special symposium on Photochemistry and the Origin of Life, Bochum, Germany, August 1972.     

The ubiquity of iron

The importance of iron in living systems can be traced to the many complexes within which it is found, to its chemical mobility in undergoing oxidation-reduction reactions, and to the abundance of iron in Earth's crust. Iron is the most abundant element, by mass, in the Earth, constituting about 80% of the inner and outer cores of Earth. The molten outer core is about 8000 km in diameter, and the solid inner core is about 2400 km in diameter. Iron is the fourth most abundant element in Earth's crust. It is the chemically functional component of mononuclear iron complexes, dinuclear iron complexes, [2Fe-2S] and [4Fe-4S] clusters, [Fe-Ni-S] clusters, iron protophorphyrin IX, and many other complexes in protein biochemistry. Metals such as nickel, cobalt, copper, and manganese are present in the crust and could in principle function chemically in place of iron, but they are scarce in Earth's crust. Iron is plentiful because of its nuclear stability in stellar nuclear fusion reactions. It seems likely that other solid planets, formed by the same processes as Earth, would also foster the evolution of life and that iron would be similarly important to life on those planets as it is on Earth.     

Thermodynamics of thermal radiation from stars photoautotrophs and biospheres

Photoautotrophs are almost the exclusive providers of chemical free energy to the Earth biosphere. Their importance in coadjuvating the evolutionary development of higher forms of life in other planets is briefly discussed from this point of view. A simple analysis based on the nonequilibrium thermodynamics of thermal radiation fields is performed. The analysis relates well known standard parameters of stars of the main sequence to the thermodynamic bounds on the free energy acquisition of planetary photosynthetic processes activated by the star radiation. Upper bounds to permissible wavelengths, active in photosynthesis easily follow. Simple inferences can then be made about the possible types of main sequence stars with planetary systems where exobiological photoautotrophs might have evolved. As red dwarves constitute both the great majority of companions to the Sun and the majority of main sequence stars in our Galaxy, emphasis is placed on discussing the case of planetary systems of stars with low photospheric temperatures. Bounds to the free energy intake per unit area by the biospheres of planets in planetary systems of late type main sequence stars are estimated and compared. Some simple conclusions are drawn.Special Symposium on Photochemistry and the Origins of Life, Sixth International Congress on Photobiology, Bochum, Germany.     

Interrupted Genes in Extremophilic Archaea: Mechanisms of Gene Expression in Early Organisms

Extremophilic Archaea populate biotopes previously considered inaccessible for life. This feature, and the possibility that they are the extant forms of life closest to the last common ancestor, make these organisms excellent candidates for the study of evolution on Earth and stimulate the exobiological research in planets previously considered totally inhospitable. Among the other aspects of the physiology of these organisms, the study of the molecular genetics of extremophilic Archaea can give hints on how the genetic information is transmitted and propagated in ancient forms of life. We review here the expression of interrupted genes in a recently discovered nanoarchaeon and the mechanisms of reprogrammed genetic decoding in Archaea. Presented at: National Workshop on Astrobiology: Search for Life in the Solar System, Capri, Italy, 26 to 28 October, 2005.     

Prebiotic materials from on and off the early Earth

One of the greatest puzzles of all time is how did life arise? It has been universally presumed that life arose in a soup rich in carbon compounds, but from where did these organic molecules come? In this article, I will review proposed terrestrial sources of prebiotic organic molecules, such as Miller-Urey synthesis (including how they would depend on the oxidation state of the atmosphere) and hydrothermal vents and also input from space. While the former is perhaps better known and more commonly taught in school, we now know that comet and asteroid dust deliver tons of organics to the Earth every day, therefore this flux of reduced carbon from space probably also played a role in making the Earth habitable. We will compare and contrast the types and abundances of organics from on and off the Earth given standard assumptions. Perhaps each process provided specific compounds (amino acids, sugars, amphiphiles) that were directly related to the origin or early evolution of life. In any case, whether planetary, nebular or interstellar, we will consider how one might attempt to distinguish between abiotic organic molecules from actual signs of life as part of a robotic search for life in the Solar System.     

Neutrino intergalactic communication,metal life,and viruses: Part 1 quo vadis ex machina

At one spectrum extreme, Astrobiology conjectures that for exoplanets with Goldilocks conditions, terrestrial-like life is inevitable. Moreover, it is envisaged that via panspermia, terrestrial-like life and its precursors are transferred among galaxies, stars, and within solar systems via transiting comets, asteroids, and planetoids. In addition, expelled stars, which have solar systems, it is inferred, transfer life as well. However, at the other extreme, we propose a paradigm shift that on some planets, subject to non- Goldilocks conditions, metal machine life could arise, ab initio, and evolve viruses, intelligence, and civilizations, conjointly. Accordingly, intelligent mechanized civilizations could readily and efficiently commence space exploration. Furthermore, as a counter paradigm shift, such civilizations could experiment and produce non-metallic life, based on carbon and other non-metal elements, under suitable conditions, related to Goldilocks life. Even a single example of validated interstellar or intergalactic communication received on the Earth would support the existence of life elsewhere. However, the communication platform should not be restricted to electromagnetic radiation. Other platforms should be included as well - one such example, which would require sophisticated technology, is neutrino communication. This is the case for any advanced civilization, be it metal-machine based, biological-based, and carbon-based. In sum, civilizations based on machine life, would be highly productive due to the longevity and hardiness of machine life. However, significant caveats are raised in this brief report, because possibly dissimilar psychologies and intelligence may lead to conflicts between metal machine life and biological life, inter-paradigm conflict.     

Thermodynamic Constrains for Life Based on Non-Aqueous Polar Solvents on Free-Floating Planets

Free-floating planets (FFPs) might originate either around a star or in solitary fashion. These bodies can retain molecular gases atmospheres which, upon cooling, have basal pressures of tens of bars or more. Pressure-induced opacity of these gases prevents such a body from eliminating its internal radioactive heat and its surface temperature can exceed for a long term the melting temperature of a life-supporting solvent. In this paper two non-aqueous but still polar solvents are considered: hydrogen sulfide and ammonia. Thermodynamic requirements to be fulfilled by a hypothetic gas constituent of a life-supporting FFP’s atmosphere are studied. The three gases analyzed here (nitrogen, methane and ethane) are candidates. We show that bodies with ammonia oceans are possible in interstellar space. This may happen on FFPs of (significantly) smaller or larger mass than the Earth. Generally, in case of FFP smaller in size than the Earth, the atmosphere exhibits a convective layer near the surface and a radiative layer at higher altitudes while the atmosphere of FFPs larger in size than Earth does not exhibit a convective layer. The atmosphere mass of a life-hosting FFP of Earth size is two or three orders of magnitude larger than the mass of Earth atmosphere. For FFPs larger than the Earth and specific values of surface pressure and temperature, there are conditions for condensation (in the ethane atmosphere). Some arguments induce the conclusion than the associated surface pressures and temperatures should be treated with caution as appropriate life conditions.     

Cosmic vacuum prevents radiopanspermia

The paper describes the new physical mechanism for the explanation of the irreversible damage of vegetative cells and spores of microorganisms (m/o) under space thermovacuum conditions (tvc) (vacuum+high temperatures), developed by the authors based on the published experimental data of various authors. The suggestion was made that this mechanism could inactivate most vegetative cells and spores of the m/o at the initial stage of their spontaneous migration into the cosmos from the platforms where life has originated and evolved. The authors believe the Earth and Earth-like planets to be such platforms. Such a mechanism could restrict the application of the radiopanspermia hypothesis to the explanation of the origin of life on the Earth.