Plant traits determine the phylogenetic structure of arbuscular mycorrhizal fungal communities

Functional diversity in ecosystems has traditionally been studied using aboveground plant traits. Despite the known effect of plant traits on the microbial community composition, their effects on the microbial functional diversity are only starting to be assessed. In this study, the phylogenetic structure of arbuscular mycorrhizal (AM) fungal communities associated with plant species differing in life cycle and growth form, that is, plant life forms, was determined to unravel the effect of plant traits on the functional diversity of this fungal group. The results of the 454 pyrosequencing showed that the AM fungal community composition differed across plant life forms and this effect was dependent on the soil collection date. Plants with ruderal characteristics tended to associate with phylogenetically clustered AM fungal communities. By contrast, plants with resource‐conservative traits associated with phylogenetically overdispersed AM fungal communities. Additionally, the soil collected in different seasons yielded AM fungal communities with different phylogenetic dispersion. In summary, we found that the phylogenetic structure, and hence the functional diversity, of AM fungal communities is dependent on plant traits. This finding adds value to the use of plant traits for the evaluation of belowground ecosystem diversity, functions and processes.     

Community analysis of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilization trial

In this study, we investigated the impact of organic and mineral fertilizers on the community composition of arbuscular mycorrhizal (AM) fungi and bacteria in the mycorrhizosphere of maize in a field experiment established in 1956, in south-east Sweden. Roots and root-associated soil aggregates were sampled four times during the growing season in 2005, in control plots and in plots amended with calcium nitrate, ammonium sulphate, green manure, farmyard manure or sewage sludge. Fungi in roots were identified by cloning and sequencing, and bacteria in soil aggregates were analysed by terminal-restriction fragment length polymorphism, cloning and sequencing. The community composition of AM fungi and bacteria was significantly influenced by the different fertilizers. Changes in microbial community composition were mainly correlated with changes in pH induced by the fertilization regime. However, other factors, including phosphate and soil carbon content, also contributed significantly to these changes. Changes in bacterial community composition and a reduction in bacterial taxon richness throughout the growing season were also manifest. The results of this study highlight the importance and significant effects of the long-term application of different fertilizers on edaphic factors and specific groups of fungi and bacteria playing a key role in arable soils.     

Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland

Although arbuscular mycorrhizal fungi (AMF) form spatially complex communities in terrestrial ecosystems, the scales at which this diversity manifests itself is poorly understood. This information is critical to the understanding of the role of AMF in plant community composition. We examined small-scale (submetre) variability of AMF community composition (terminal restriction fragment length polymorphism fingerprinting) and abundance (extraradical hyphal lengths) in two 1 m(2) plots situated in a native grassland ecosystem of western Montana. Extraradical AMF hyphal lengths varied greatly between samples (14-89 m g soil(-1)) and exhibited spatial structure at scales <30 cm. The composition of AMF communities was also found to exhibit significant spatial autocorrelation, with correlogram analyses suggesting patchiness at scales <50 cm. Supportive of overall AMF community composition analyses, individual AMF ribotypes corresponding to specific phylogenetic groups exhibited distinct spatial autocorrelation. Our results demonstrate that AMF diversity and abundance can be spatially structured at scales of <1 m. Such small-scale heterogeneity in the soil suggests that establishing seedlings may be exposed to very different, location dependent AMF communities. Our results also have direct implications for representative sampling of AMF communities in the field.     

Spatial variability of arbuscular mycorrhizal fungal spores in two natural plant communities

Geostatistical techniques were used to assess the spatial patterns of spores of arbuscular mycorrhizal fungi (AMF) in soils from two contrasting plant communities: a salt marsh containing only arbuscular mycorrhizal and non-mycorrhizal plants in a distinct clumped distribution pattern and a maquis with different types of mycorrhiza where most plants were relatively randomly distributed. Also evaluated was the relationship between the spatial distribution of spores and AM plant distribution and soil properties. A nested sampling scheme was applied in both sites with sample cores taken from nested grids. Spores of AMF and soil characteristics (organic matter and moisture) were quantified in each core, and core sample location was related to plant location. Semivariograms for spore density indicated strong spatial autocorrelation and a patchy distribution within both sites for all AM fungal genera found. However, the patch size differed between the two plant communities and AM fungal genera. In the salt marsh, AM fungal spore distribution was correlated with distance to AM plants and projected stand area of AM plants. In maquis, spatial AM fungal spore distribution was correlated with organic matter. These results suggest that spore distribution of AMF varied between the two plant communities according to plant distribution and soil properties.     

丛枝菌根真菌生物地理学研究进展

丛枝菌根真菌(arbuscular mycorrhizal fungi,AMF)普遍存在于陆地生态系统中,能与绝大多数高等植物形成菌根共生体系。AMF能够促进植物对矿质养分的吸收,增强植物的抗逆能力,在维持生态系统稳定性和生产力中发挥着重要作用。AMF生物地理学主要研究AMF的生物地理分布格局和群落构建机制,对于理解AMF在不同生态系统中的重要性至关重要。总结了AMF生物地理学最新研究进展及研究方法,提出了AMF生物地理学研究理论框架。认为AMF在自然界中并非简单随机分布,宿主植物、地理因子、气候因子和土壤因子共同决定AMF的群落结构,不同尺度下的AMF群落构建符合生态位-中性连续统假说,但在不同尺度下这些驱动因子的相对重要性不同。在全球尺度和区域尺度下,AMF的地理分布格局主要受地理距离和气候因子的影响,中性理论的作用大于生态位理论。随着空间尺度的缩减,宿主植物和环境因子对AMF群落的影响胜过地理距离和扩散限制的作用,生态位理论取代中性理论在AMF群落构建中的主导地位。此外,很多研究发现,同一生境中AMF的群落构建机制并非一成不变,会随环境的变化而发生改变。在未来的研究中,应在野外调查和公共数据库的基础上加强整合分析和数据挖掘工作,从而进一步丰富和完善AMF生物地理学理论。     

辽宁省9种兰科植物根内与根际土壤中真菌群落结构的差异

兰科植物的生存及生长高度依赖其根中的共生真菌, 其中的菌根真菌更是对兰科植物的种子萌发与后续生长有着非常重要的作用, 研究兰科植物根中的真菌, 尤其是菌根真菌, 对兰科植物的保护有重要作用。该研究利用第二代测序技术, 对中国辽宁省境内的9种属于极小种群的兰科植物的根、根际土和根围土中的真菌群落和菌根真菌组成进行了研究。结果显示, 兰科植物根中的真菌群落和根际土、根围土中的真菌群落具有显著差异。兰科植物根中的总操作分类单元(OTU)数目远小于根际土和根围土中的总OTU数目。同时, 兰科植物根中菌根真菌的种类和丰度与根际土、根围土中菌根真菌的种类与丰度没有明显联系。FunGuild分析结果显示, 丛枝菌根真菌在根际土与根围土中的丰度非常高, 但在兰科植物的根中却数量极少。这些结果表明, 兰科植物根中的真菌群落与土壤中的真菌群落在一定程度上是相互独立的。     

Edaphic and host plant factors are linked to the composition of arbuscular mycorrhizal fungal communities in the root zone of endangered Ulmus chenmoui Cheng in China

Despite the importance of arbuscular mycorrhizal fungi (AMF) within deciduous forest ecosystems, we know little about how natural AMF communities are structured in the root zone of the endangered elm species Ulmus chenmoui. In this study, three U. chenmoui sampling sites, differing with respect to plant health, age, and growth status, were selected in Anhui Province, China. AMF biodiversity in the root zones of individual U. chenmoui trees was investigated using high‐throughput sequencing. In total, 61 AMF operational taxonomic units were detected. Five genera, namely Glomus (62.82%), Paraglomus (17.82%), Rhizophagus (4.29%), Septoglomus (4.06%) and Funneliformis (2.35%), and 29 species of AMF were identified. Correlation analysis indicated that available soil phosphorus and potassium concentrations were the main edaphic factors influencing AMF community structure. There was a difference in AMF species richness among the three U. chenmoui stands. Our study showed that soil nutrient concentrations and plant health, age, and growth status can exert a selective effect on the composition of the AMF population in the soil in the root zones of U. chenmoui trees.     

Small-scale spatial heterogeneity of arbuscular mycorrhizal fungal abundance and community composition in a wetland plant community

Although it has become increasingly clear that arbuscular mycorrhizal fungi (AMF) play important roles in population, community, and ecosystem ecology, there is limited information on the spatial structure of the community composition of AMF in the field. We assessed small-scale spatial variation in the abundance and molecular diversity of AMF in a calcareous fen, where strong underlying environmental gradients such as depth to water table may influence AMF. Throughout an intensively sampled 2 × 2 m plot, we assessed AMF inoculum potential at a depth of 0–6 and 6–12 cm and molecular diversity of the AMF community using terminal restriction fragment length polymorphism of 18S rDNA. Inoculum potential was only significantly spatially autocorrelated at a depth of 6–12 cm and was significantly positively correlated with depth to water table at both depths. Molecular diversity of the AMF community was highly variable within the plot, ranging from 2–14 terminal restriction fragments (T-RFs) per core, but the number of T-RFs did not relate to water table or plant species richness. Plant community composition was spatially autocorrelated at small scales, but AMF community composition showed no significant spatial autocorrelation. Saturated soils of calcareous fens contain many infective AMF propagules and the abundance and diversity of AMF inoculum is patchy over small spatial scales. An erratum to this article can be found at     

Divergence of mycorrhizal fungal communities in crop production systems

Mycorrhizal fungi are present in all arable soils and colonize nearly all crops and weed pests of crops. They may be involved as mutualists or pathogens of crops in well known but poorly understood phenomena such as crop rotation and green manure effects on soil productivity. Crop change effects on mycorrhizal fungal community parameters were evaluated in three field experiments. In Experiment 1, soybean (Glycine max (L.) Merr. cv. Douglas) was grown continuously or rotated with corn (Zea mays L.), milo (Sorghum bicolor (L.) Moench), or fescue (Festuca arundinacea Schreb cv. Johnstone) for two years, then soybean was grown on all plots. Continuous soybean plots were dominated byGigaspora spp., while rotated crops were dominated byGlomus spp. Differences in communities and community indices of continuous soybean and rotated plots were reduced after growing soybeans on rotated plots. In Experiment 2, a fescue sod was plowed and pearl millet (Pennisetum americanum Leeke) or crabgrass (Digitaria sanguinalis (L.) Scop.) grown. Both hosts resulted in great changes in populations of individual species, decreases in community dominance, and increases in community diversity and equitability. Crabgrass also resulted in reduced species richness. In Experiment 3, tobacco (Nicotiana tabacum L.) or fescue was planted on adjacent tracts of land with a long-term history of either fescue (30 yr) or sorghum-sudangrass (Sorghum bicolor (L.) Moench. ×S. sudanense (Piper) Staph.) (3 yr). The long-term cropping history had major effects on the mycorrhizal fungal communities which were related to the expression of mycorrhizal stunt disease of tobacco. Changes occurred in these communities in response to either current-season crop. These experiments suggest that crop rotation causes large changes in mycorrhizal fungal communities, that these changes may be involved in the rotation effect on soil productivity, and that design of cropping systems should take mycorrhizal fungal communities into consideration.     

桐-药复合经营模式下泡桐丛枝菌根真菌群落结构特征

采用Illumina MiSeq高通量测序技术,研究江西鄱阳湖周边平原岗地的泡桐纯林及桐-药复合经营模式(泡桐-玉竹、泡桐-麦冬和泡桐-射干)下泡桐丛枝菌根真菌(arbuscular mycorrhizae fungi, AMF)群落结构特征。研究发现,泡桐AMF群落主要由球囊霉科、巨孢囊霉科、无梗囊霉科和多孢囊霉科组成,其中球囊霉科真菌占绝对优势,但不同科的相对丰度在不同经营模式下仍存在差异。与泡桐纯林相比,桐-药复合经营模式会降低泡桐菌根侵染率及AMF群落多样性。只有泡桐-射干经营模式中的泡桐含有多孢囊霉科真菌,且相对多度占2.73%。研究结果表明桐-药复合经营模式下中药材种类的差异会不同程度地改变泡桐AMF的群落结构。这为进一步研究桐-药复合经营模式下泡桐AMF的生态功能和资源利用提供了科学依据。     

城市生态系统中丛枝菌根真菌侵染状况及群落特征

作者采集了北京、青岛、济南、南京、武汉和贵阳6个城市中部分大学校园高羊茅Festuca elata、城内公园大叶黄杨Euonymus japonicus及郊区公园连翘Forsythia suspensa根区土样,测定菌根着生状况和丛枝菌根（arbuscular mycorrhizal,AM）AM真菌孢子密度,形态鉴定AM真菌种类,测定AM真菌种丰度、多样性指数及群落结构等。除从北京中国人民大学校园草坪和南京下马坊公园的大叶黄杨根系上未见丛枝结构外,其他根系样品均观测到典型的丛枝和泡囊结构,丛枝着生率较低,且多为A-型。各城市大多数样品的菌根总侵染率、丛枝着生率和泡囊数分别低于40%、5%和1/mm。北京中国人民大学草坪根系菌根总侵染率显著低于其他城市校区的。除北京香山的连翘和济南山东大学的高羊茅上的种丰度、Shannon指数、以及北京紫竹院公园大叶黄杨上的孢子密度之外,青岛市的3种植物上AM真菌的孢子密度、种丰度和Shannon指数均高于其他城市的。各校园草坪中相同的AM真菌种类较少,但放射球囊霉Glomus radiatum分布频率100%,为校园草坪中的优势种。城市公园以青岛中山公园的AM真菌的孢子密度和种丰度最高;郊区公园以贵阳黔灵山的孢子密度、种丰度和Shannon指数最高,武汉狮子山的种丰度和Shannon指数最低。土壤氮沉降与泡囊数量呈显著负相关,土壤压实程度与泡囊数量呈显著正相关。大叶黄杨根区土壤中AM真菌种丰度与土壤有机质含量呈显著正相关,Shannon指数与土壤pH呈显著正相关。结论认为,中国不同城市生态系统中AM真菌群落结构差异较大,氮沉降和土壤压实程度对根内泡囊数量具有不同的影响。     

桉树种植对林地土壤丛枝菌根真菌群落结构及多样性的影响

桉树(Eucalyptus spp.)种植所产生的生态争议已受到广泛关注。丛枝菌根真菌(Arbuscular Mycorrhizal Fungi, AM真菌)是土壤微生物的重要组成部分,与根系共生后可促进植物的养分运输、提高植物逆境生存能力等。然而,桉树种植对土壤AM真菌群落结构和功能的影响尚不清楚。研究比较了次生林改种桉树后不同年限(2年/5年/10年)的土壤理化性质、AM真菌种类、群落组成及多样性的变化。结果表明,桉树种植显著改变了土壤理化性质,具体表现为2年生和10年生桉树林中土壤pH和有机碳显著降低(P0.05);AM真菌的孢子密度在桉树林土壤中显著低于次生林土壤(其中在5年生土壤中最低);AM真菌的种丰度随种植年份的增加逐渐下降,在10年生桉树林土壤中有所恢复; 5年生桉树的菌根侵染率最高,10年生桉树侵染率最低。AM真菌群落组成和结构发生显著变化,优势种Funneliforms geosporus的丰度在2年生和10年生林地中显著降低;而Septoglomus deserticola的丰度在2年生和10年生林地中显著增加。另外,冗余分析(Redundancy analysis, RDA)结果表明,土壤AM真菌群落结构主要受土壤pH值(解释率:89.88%)变化的影响。研究揭示了次生林改种桉树林后土壤AM真菌的群落变化特征,为桉树林的栽培管理和环境修复提供了数据支撑。     

Influence of arbuscular mycorrhizal fungi on soil structure and soil water characteristics of vertisols

The influence of inoculation with arbuscular mycorrhizal fungi (AM fungi) on soil water characteristics of fast and slowly wetted vertisol samples was studied. Vertisols characteristically have a low stability to wetting, and the disruption of their larger pores when they swell leads to reduced water infiltration and thereby to runoff. The degree of aggregate breakdown determines the ability of the soil to drain. A vertisol was used in this pot experiment with four treatments: T₁: Pasteurized soil, T₃: Pasteurized soil, with plants, T₄: Inoculated, pasteurized soil, with plants, T₅: Unpasteurized soil, with plants. A treatment using inoculated, pasteurized soil (T₂) was included in a related study (Bearden and Petersen, 2000) comparing aggregate stability, and the present study follows the same numbering to aid in comparison of experiments. After fast, disruptive wetting, the soil inoculated with AM fungi (T₄) was found to have a lower soil water content than did the soils from the other treatments at matric potentials lower than –3.92 kPa. This indicates greater drainage from pores smaller than 75 m for the soil inoculated with AM fungi, and the greater drainage appears to be directly related to a characteristic pore range between 67 and 75 m. The soil without plants (T₁), when wetted fast, had a lower soil water content at matric potentials higher than –3.92 kPa than soils from the other treatments, which indicates less pore volume due to pores larger than 75 m in the treatment without plants. The pore indexes, calculated as the ratio between the slope of the fast and the slope of the slowly-wetted water characteristics, generally had the highest values for the soil inoculated with AM fungi (T₄) from matric potential 0.00 to –0.29 kPa. In this matric potential range, the pore indexes were less than one. The unpasteurized soil with naturally present AM fungi (T₅) generally had the highest pore indexes from matric potential –0.49 to –3.92 kPa, and the pore indexes in this matric potential range were above one. These results indicate the smallest loss of very large pores in the soil inoculated with AM fungi (T₄) and the largest gain of smaller sized pores in the unpasteurized soil (T₅). This suggests that the resistance to breakdown of the largest pores is related to the presence of roots, and that the gain of groups of smaller pores is related to the presence of hyphae.     

盐渍化土壤根际微生物群落及土壤因子对AM真菌的影响

为探明盐渍化土壤影响下AM真菌与根际土壤间的关系,试验选取宁夏碱化龟裂土、草甸盐土、盐化灌淤土3种类型4个样地上典型植被群落,测定了植物根际土壤养分含量、微生物群落结构、AM真菌侵染率以及孢子密度。结果显示:盐渍化土壤根际微生物碳源利用类型显著不同,对芳香类化合物的代谢能力整体较弱;红寺堡草甸盐土上微生物优势群落为氨基酸代谢类群,惠农盐化灌淤土为多聚化合物代谢群,西大滩碱化龟裂土为碳水化合物代谢群。AM真菌孢子密度与微生物碳源代谢群间的关系比较复杂。其中,惠农样点根际土壤孢子密度与多聚化合物微生物代谢群呈显著正相关,西大滩地区孢子密度与碳水化合物微生物代谢群呈显著正相关。土壤有机质、全盐、全氮、碱解氮等土壤肥力因子及土壤中的HCO-3、Na+、Cl-等盐基离子含量能解释AM真菌孢子密度与土壤环境因子之间相互关系的大部分信息。较高的HCO-3浓度促进了AM真菌侵染率的提高,但高盐浓度下Na+和Cl-降低了菌根侵染率。土壤对AM真菌孢子密度、侵染率的影响因土壤盐分组成类型的不同而异。研究结果为深入了解AM真菌多样性,促进宁夏盐碱地的合理开发与利用提供了理论依据。     

丛枝菌根真菌形态结构、物种多样性和群落组成对氮沉降响应研究进展

工业革命以来,人类活动输入到生态系统中的氮迅速增加,已突破地球所能承受的氮循环阈值。过量氮沉降会造成生物多样性丧失等一系列危害,严重影响生态系统结构和功能。丛枝菌根(AM)真菌能够与大约70%-80%的陆地植物种类形成共生关系,在宿主植物养分吸收、抵抗外界不良环境压力、群落动态和物种共存、生物地球化学循环等方面具有重要的作用。探究AM真菌对氮沉降的响应对认识和把握菌根真菌缓解氮沉降的负面后果,维持生态系统的结构和功能具有重要意义。本文综述了AM真菌的形态结构、物种多样性和群落组成等对氮沉降的响应机制。前人研究表明氮沉降通常降低AM真菌的根系定殖率,减少根外菌丝密度和土壤孢子密度,改变菌丝生长的时间动态;降低AM真菌多样性,改变AM真菌群落组成。氮沉降主要通过缓解植物氮限制、降低植物对菌根的依赖性、减少植物对菌根的碳分配、改变根系和土壤中菌根生物量比率、在植物根内维持稳定的菌根真菌组成作为应对未来扰动的“保险”、改变土壤资源有效性及土壤酸度等直接和间接途径影响AM真菌结构和功能。我们建议在未来研究中整合多组学手段、开展学科交叉,聚焦复杂的生物互作体系对氮沉降的响应机制,以及AM真菌对氮沉降响应的生态后果。     

Organic fertilizers alter the composition of pathogens and arbuscular mycorrhizal fungi in maize roots

Roots of agricultural crops, including maize, are hosts of different microorganisms, many beneficial, like plant growth and health‐promoting arbuscular mycorrhizal fungi (AMF), as well as pathogens including Pythium, Polymyxa and Microdochium. To improve crop nutrition and health, profound knowledge is required regarding how agricultural practices affect field populations of root‐associated microorganisms. Hence, the objective of this work was to evaluate the effect of crop genotype and organic fertilizers on the plant growth performance of maize and their root‐associated microorganisms. The experiment was conducted as a fully factorial greenhouse pot experiment with maize cultivars (two land races and two hybrids) and organic fertilizers (green manure, cow manure and compost) as the two main factors. Plants were harvested 8 weeks after sowing. In general, the different maize cultivars responded similarly to the applications of the organic fertilizers. Cow manure and compost increased plant growth, whereas green manure had limited effect on plant growth. Root colonization with AMF was reduced by green manure with rape. Infection with the root pathogens Pythium and Polymyxa was reduced by all organic fertilizers, whereas in contrast, infection with Microdochium increased with the majority of the organic fertilizers applied. In conclusion, both maize genotype and organic fertilizers affect the abundance of AMF and root pathogens in maize, which should be considered when developing management strategies of these root‐inhabiting microorganisms.     

入侵豚草与本地植物竞争对丛枝菌根真菌多样性的影响

外来植物入侵常引起入侵地丛枝菌根真菌（arbuscular mycorrhizal fungi,AMF）多样性的变化,但AMF多样性的变化与入侵域本地植物种类相关性目前尚不清楚。本研究采用野外同质园试验研究豚草与不同本地植物竞争时对AMF多样性的影响。本试验共设入侵豚草单种、本地植物狗尾草Setaria viridis单种、藜 Chenopodium album单种、黄香草木犀Melilotus officinalis单种、豚草和狗尾草混种、豚草和藜混种、豚草和黄香草木犀混种以及裸土（无任何植物生长）对照8个处理。采集根区土样后分离、鉴定AMF,分析植株生物量和AMF物种多样性变化间的关系。结果表明,对豚草而言,单种处理中生物量均高于混种处理;豚草分别与3种本地植物竞争时,与黄香草木犀混种中豚草竞争能力最强,而与藜混种中竞争能力最弱。豚草分别与3种本地植物混种时土壤中AMF种丰度和香农-威纳指数分别显著高于豚草单种和本地植物单种,其中豚草与藜混种中AMF的种丰度和香农-威纳指数最高,与狗尾草混种中AMF的种丰度和香农-威纳指数最低,而豚草分别与3种本地植物混种处理中孢子密度显著低于本地植物单种（豚草与黄香草木犀混种除外）。豚草单种、狗尾草单种、藜单种、豚草分别与狗尾草和藜混种4个处理中AMF优势种均为网状球囊霉Glomus reticulatum和缩隔球囊霉Septoglomus constrictum;黄香草木犀单种中优势种是网状球囊霉、缩隔球囊霉和根内根孢囊霉Rhizophagus Intraradices,豚草与黄香草木犀混种中优势种是网状球囊霉和根内根孢囊霉;狗尾草单种、豚草与狗尾草混种和豚草与藜混种3个处理的特有种分别是木薯根孢囊霉Rhizoglomus manihotis、近明球囊霉Claroideoglomus claroideum和美丽盾巨孢囊霉Scutellospora calospora。狗尾草单种生物量与孢子密度呈显著正相关,豚草与狗尾草混种中豚草的生物量与均匀度呈显著负相关,豚草与黄香草木犀混种中豚草的生物量与孢子密度呈显著正相关,与香农威纳指数呈显著负相关。综上可知,豚草与本地植物竞争对AMF多样性的影响具有异质性,这与本地植物种类密切相关。     

Serpentine and non-serpentine ecotypes of Collinsia sparsiflora associate with distinct arbuscular mycorrhizal fungal assemblages

Although plant adaptation to serpentine soils has been studied for several decades, the mechanisms of plant adaptation to edaphic extremes are still poorly understood. Arbuscular mycorrhizal fungi (AMF) are common root symbionts that can increase the plant hosts' establishment and growth in stressful environments. However, little is known about the role plant-AMF interactions play in plant adaptation to serpentine. As a first step towards understanding this role, we examined the AMF assemblages associated with field populations of serpentine and non-serpentine ecotypes of California native plant Collinsia sparsiflora. We sampled roots of C. sparsiflora from three serpentine and three non-serpentine sites in close proximity (110 m to 1.94 km between sites) and analysed the small subunit ribosomal DNA gene amplified from root DNA extracts using AMF-specific primers. A total of 1952 clones from 24 root samples (four from each site) were sequenced. We used sequence similarity and phylogenetic analysis to determine operational taxonomic units (OTU) resulting in 19 OTUs representing taxa from six AMF genera, including one serpentine-specific OTU. We used Bray-Curtis similarity, multidimensional scaling and analysis of similarity to compare root sample AMF assemblages. These analyses clearly showed that plant ecotypes associated with distinct AMF assemblages; an Acaulospora OTU-dominated serpentine, and a Glomus OTU-dominated non-serpentine assemblages. Species diversity and evenness were significantly higher in serpentine assemblages. Finally, relate analysis showed a relationship between ecotype AMF assemblages and soil nutrients. This study reveals a strong relationship between AMF associates and plant adaptation to edaphic extremes.