The galactan sulphate of the red alga Polysiphonia lanosa.

The structure of the galactan sulphate of P. lanosa has been established by a combination of methylation, treatment with alkali, and partial methanolysis of the alkali-treated polysaccharide to give derivatives of agarobiose. The polysaccharide belongs to the agar class, in which 3-linked derivatives of beta-D-galactose alternate with 4-linked derivatives of alpha-L-galactose in a repeating sequence. In addition to D-galactose itself, the 3-linked units include 6-O-methyl-D-galactose, D-galactose 6-sulphate, and a hitherto unreported unit, 6-O-methyl-D-galactose 4-sulphate. The 4-linked units include L-galactose 6-sulphate, 2-O-methyl-L-galactose 6-sulphate, and 3,6-anhydro-L-galactose.     

Carbon exchange between Polysiphonia lanosa (Rhodophyceae) and its brown algal host

Polysiphonia lanosa and its preferred Ascophyllum nodosum host exchange 14C-labeled photoassimilates. Exchange was demonstrated by injecting 14C-bicarbonate into air bladders on 15-30 cm cultured sections of field-collected host blades. Each section bore rhizoidally attached Polysiphonia. In a separate set of experiments, Polysiphonia on similar host material was surface treated with 14C-bicarbonate in sealed vessels. Movement of radioactive label was detected by autoradiographic and liquid scintillation techniques. On average, 10.5% of total label moved from host to hemiparasite following the first treatment, and 9.7% moved from hemiparasite to host following the second. Reciprocal exchange of tagged photoassimilates may play an important role in the specificity of the relationship between these two algal species.     

Comparative study of metabolism and forms of transport of phosphate between Ascophyllum nodosum and Polysiphonia lanosa

Polysiphonia lanosa (L.) Tandy is a marine red alga that usually grows epiphytically on the fucale Ascophyllum nodosum (L.) Le Jolis. The present work was conducted in order to obtain more information on the relationships between these two algae, especially as regards the metabolism and long-distance transport of phosphorus. Three types of experiments were carried out using labelled phosphorus. (1) Comparative study of the metabolism of ³²P₁ absorbed by the tissues of each species. By means of two-dimensional chromatography and autoradiography, it was shown that ³²P₁ was rapidly incorporated into organic soluble compounds (adenosine triphosphate, hexose monophosphate, uridine diphosphoglucose, phosphoenolpyruvate + phosphoglyceric acid). Although the two algae belong to different phylae the phosphorylated compounds were not very different. The energy charges (0. 72 for both species) were in the usual range for aerobic plant tissues. On the other hand the incorporation of ³²P₁ into the insoluble P₀ fraction was doubled in P. lanosa compared to in A. nodosum (ca 80 and 40%, respectively). At the source level, the air bladder of A. nodosum. the same soluble compounds (inorganic phosphate, P₁ adenosine triphosphate, hexose monophosphate. etc.) represented the likely forms transported. A part of the soluble P₀ fraction may return to the P₁ fraction. (2) In translocation experiments conducted in situ, ³²P₁ locally injected into an air bladder moved over long distances not only through the thallus of A. nodosum but also into P. lanosa. The reciprocal transfer remained unsuccessful. (3) The ³²P₁ represented the predominant compound identified in the two species: this argues in favour of P₁ as the translocated form of phosphorus. Our results support the hypothesis of a parasitic rather than a simple epiphytic relationship between the two algae.     

Enzymatic cleavage of RNA by RNA

The catalytic activity of E. coli RNase P, an enzyme essential for tRNA biosynthesis in vivo, resides in the RNA subunit of the enzyme. This RNA, which has all the properties of a classical enzyme, can cleave precursor tRNAs in vitro in the total absence of proteins.     

Enzymatic cleavage of RNA by RNA

The discovery and characterization of the catalytic RNA subunit of the enzyme ribonuclease P ofEscherichia coli is described.Nobel lecture given on December 8, 1989, by Professor Sidney Altman, and published in LES PRIX NOBEL 1989, printed in Sweden by Norstedts Tryckeri, Stockholm, Sweden, 1990, republished here with the permission of the Nobel Foundation, the copyright holder.     

Enzymatic cleavage of peptide-linked radiolabels from immunoconjugates.

We have incorporated peptides selected by combinatorial library [Peterson, J. J., and Meares, C. F. (1998) Bioconjugate Chem. 9, 618-626) into peptide-linked radiolabeled immunoconjugates of the form DOTA-peptide-antibody. Decapeptide linkers -GFQGVQFAGF- and -GFGSVQFAGF-, selected for cleavage by human liver cathepsin B, were rapidly digested in vitro when compared to the simple model tetrapeptide motif of the prototype -GGGF- [Li, M., and Meares, C. F. (1993) Bioconjugate Chem. 4, 275-283]. Cleavage properties of these library-selected substrates for cathepsin B compared favorably with decapeptide linkers -GLVGGAGAGF- and -GGFLGLGAGF-, which incorporate two of the most labile extended cathepsin B substrates from the literature. The decapeptide linker -GFGSTFFAGF-, selected from the library for cleavage by human liver cathepsin D, was rapidly digested by cathepsin D while the others were not.     

Enzymatic cleavage and HPLC peptide mapping of proteins

Detailed procedures are described for successfully digesting reasonably small quantities (i.e., usually >10 pmol) of proteins with a variety of proteases and for then isolating the resulting peptides by reversephase HPLC. Since sodium dodecyl sulfate-polyacrylamide, gel electrophoresis (SDS-PAGE) appears to be the current method of choice for final purification of proteins for structural analysis, special attention is given to carrying out in-gel proteolytic digests on SDS-PAGE-separated proteins that have usually been stained with Coomassie Blue. A compilation of data from nearly 200 “unknown” samples is used to help provide realistic expectations with respect to the results that are likely to be obtained from carrying out in-gel proteolytic digests on large numbers of proteins.     

Enzymatic cleavage of fusion proteins using immobilised protease 3C

A strategy for efficient cleavage of fusion proteins using an immobilised protease has been developed. Protease 3C from coxsackie virus was recombinantly produced in Escherichia coli and covalently immobilised onto a solid support. Thereafter, Z(basic) tagged fusion proteins, with a specific cleavage sequence between the domains, were flown through the proteolytic column and circulated until complete cleavage. Subsequently, the processed protein solution was applied on a cation exchanger. Thereby, removal of the released, positively charged fusion tag, Z(basic), was done by adsorption to the matrix while the target proteins were recovered in the flow through. Interestingly, the columns were shown to be reusable without any measurable decrease in activity. Moreover, after storage in 4 degrees C for two months the activity was almost unaffected.     

Enzymatic cleavage of superhelical DNA in a liquid crystal state]

Superhelical pBR322 DNA molecules form liquid-crystalline dispersions in water-salt solutions containing poly(ethyleneglycol). The formation of the liquid-crystalline dispersions from superhelical DNA molecules results in the appearance of two sites inside the DNA molecules that are split by Micrococcal nuclease. The first site of digestion does not differ from the standard site split by this enzyme in water-salt solutions, whereas the second one represents a new site specific only for the DNA molecules forming liquid-crystalline dispersions. Splitting of the DNA molecule through the first site is accompanied by formation of its linear form; splitting of a new site results in the formation of two linear DNA fragments with molecular masses equal to half of the initial DNA molecules. Enzyme digestion of superhelical DNA molecules forming liquid-crystalline dispersions induces a reformation of the "nonspecific" space organization of dispersions to the cholesteric one. A hypothetic model for packing of the superhelical DNA molecules inside liquid-crystalline dispersions and its transformation under enzyme action is suggested.     

Enzymatic cleavage specificity of the proalpha1(V) chain processing analysed by site-directed mutagenesis

The proteolytic processing of procollagen V is complex and depends on the activity of several enzymes among which the BMP-1 (bone morphogenetic protein-1)/tolloid metalloproteinase and the furin-like proprotein convertases. Few of these processing interactions could have been predicted by analysing the presence of conserved consensus sequences in the proalpha1(V) chain. In the present study we opted for a cell approach that allows a straightforward identification of processing interactions. A construct encompassing the complete N-terminal end of the proalpha1(V) chain, referred to as Nalpha1, was recombinantly expressed to be used for enzymatic assays and for antibody production. Structural analysis showed that Nalpha1 is a monomer composed of a compact globule and an extended tail, which correspond respectively to the non-collagenous Nalpha1 subdomains, TSPN-1 (thrombospondin-1 N-terminal domain-like) and the variable region. Nalpha1 was efficiently cleaved by BMP-1 indicating that the triple helix is not required for enzyme activity. By mutating residues flanking the cleavage site, we showed that the aspartate residue at position P2' is essential for BMP-1 activity. BMP-1 activity at the C-terminal end of the procollagen V was assessed by generating a furin double mutant (R1584A/R1585A). We showed that, in absence of furin activity, BMP-1 is capable of processing the C-propeptide even though less efficiently than furin. Altogether, our results provide new relevant information on this complex and poorly understood mechanism of enzymatic processing in procollagen V function.     

Polysiphonia freshwateri sp. nov. and Polysiphonia koreana sp. nov.: two new species of Polysiphonia (Rhodomelaceae,Rhodophyta) from Korea

Polysiphonia sensu lato comprises approximately 200 species, which are currently assigned to several different genera. To date, one of these genera, namely, Polysiphonia, has been reported to have 17 species. Here, we describe for the first time P. freshwateri sp. nov. and P. koreana sp. nov. from Uljin and Ulleung Island, Korea, based on morphological and molecular evidence. Polysiphonia freshwateri sp. nov. and P. koreana sp. nov. are characterized by having the typical Polysiphonia features. Polysiphonia freshwateri sp. nov. is further characterized by having abundant trichoblasts, conspicuous scar cells, and tetrasporangia arranged in spiral series. Polysiphonia koreana sp. nov. is further characterized by having very scarce scar cells placed between two pericentral cells, from which cicatrigenous branches arise. The results of our rbcL sequence analyses support the taxonomic placement of P. freshwateri sp. nov. and P. koreana sp. nov. within Polysiphonia.     

Enzymatic cleavage of Clostridium pasteurianum apoferredoxin and reconstitution of the cleaved products

Native ferredoxin from Clostridium pasteurianum proved to be resistant to proteolytic cleavage under anaerobic conditions, but was digested in the presence of air. Apoferredoxin was hydrolyzed by the proteinases used, while cobalt-substituted ferredoxin was resistant both under anaerobic and aerobic conditions. These studies indicate that metal binding of the protein stabilizes the folded state, which is extremely resistant to proteolytic attack. Sulfitolyzed apoferredoxin was subjected to specific cleavage by pepsin at pH 3.2, yielding two fragments. The fragments could be reconstituted to an unstable holoprotein with UV-visible absorption features like that of the native form.