Molecular genetic assessment of bipolarity in the anchovy genus Engraulis

To test three hypotheses accounting for bipolar distributions in Engraulis , seven of eight taxa (except E. eurystole ) were surveyed with allozymes (34 loci) and 521 bp of the mitochondrial DNA cytochrome b gene. Both allozymes and mtDNA sequences revealed deep separations between New World and Old World anchovies with a mean allozyme genetic distance D  = 1·26 and net mtDNA sequence divergence d  = 15%. These values reflected separations of 5 to 10 million years. Contrary to previous phylogenetic hypotheses, which place north‐east Pacific E. mordax and south‐east Pacific E. ringens as sister taxa, the south‐west Atlantic E. anchoita and E. ringens are most closely related to each other. The north‐east Pacific E. mordax is the closest lineage to the Old World Engraulis , a group of taxa showing low divergences typical of population‐level separations (mean D  = 0·06; mean d  = 0·87%). Bipolarities of sister taxa in the east Atlantic and west Pacific reflect recent dispersals. Bipolarities in the east Pacific and west Atlantic represent paraphyletic taxa in lineages isolated since the Miocene. None of the bipolarities can be attributed to tectonic separations or competitive displacements from the tropics, but the latter situation should be re‐evaluated with comparisons to tropical anchovies of the New World.     

Genetic variation in skipjack tuna Katsuwonus pelamis(L.) using PCR‐RFLP analysis of the mitochondrial DNA D‐loop region

A high level of genetic diversity was observed in Katsuwonus pelamis populations from India ( h  = 0·952, ne  = 14·3) and Japan ( h  = 0·897, ne  = 8·9). The log‐likelihood ( G )‐based exact test revealed significant heterogeneity in the distribution of haplotypes between the two populations ( P  < 0·01, s . e . = 0·001). This result suggests that the two populations should now be treated as demographically independent and managed separately.     

Population Genetic Structuring in <Emphasis Type="Italic">Acanthopagrus butcheri</Emphasis> (Pisces: Sparidae): Does Low Gene Flow Among Estuaries Apply to Both Sexes?

Acanthopagrus butcheri completes its entire life history within estuaries and coastal lakes of southern Australia, although adults occasionally move between estuaries via the sea. Consequently, it is expected that populations of A. butcheri in different estuaries will be genetically distinct, with the magnitude of genetic divergence increasing with geographic isolation. However, previous genetic studies of A. butcheri from southeast Australia yielded conflicting results; allozyme variation exhibited minimal spatial structuring (θ = 0.012), whereas mitochondrial DNA distinguished the majority of populations analyzed (θ = 0.263) and genetic divergence was positively correlated with geographic isolation. This discrepancy could reflect high male gene flow, which impacts nuclear but not mitochondrial markers. Here we estimated allele frequencies at five nuclear microsatellite loci across 11 southeast Australian populations (595 individuals). Overall structuring of microsatellite variation was weaker (θ = 0.088) than that observed for mitochondrial DNA, but was able to distinguish a greater number of populations and was positively correlated with geographic distance. Therefore, we reject high male gene flow and invoke a stepping-stone model of infrequent gene flow among estuaries for both sexes. Likewise, management of A. butcheri within the study range should be conducted at the scale of individual or geographically proximate estuaries for both sexes. The lack of allozyme structuring in southeast Australia reflects either the large variance in structuring expected among loci under neutral conditions and the low number of allozymes surveyed or a recent colonization of estuaries such that some but not all nuclear loci have approached migration-drift equilibrium.     

Evidence for independent origin of two spring‐spawning ciscoes (Salmoniformes: Coregonidae) in Germany

Combined analyses of mitochondrial DNA (mtDNA) and microsatellite loci were performed to assess the genetic differentiation of two spring‐spawning ciscoes from each other and from sympatric Coregonus albula in two German lakes. Polymorphism was screened at six microsatellite loci and mtDNA for a total of 247 and 94 ciscoes, respectively. Microsatellite data showed a weak differentiation between spring‐spawning Coregonus fontanae and sympatric C. albula in Lake Stechlin ( F _ST = 0–0·008), whereas a significant differentiation was observed between spring‐spawning Coregonus lucinensis and sympatric C. albula in Lake Breiter Luzin ( F _ST = 0·013–0·039). A more pronounced genetic difference was observed between both spring‐spawning species ( F _ST = 0·05–0·128). Shared mtDNA haplotypes among sympatric species within both Lake Stechlin and Lake Breiter Luzin were observed, whereas no haplotype was shared between C. fontanae and C. lucinensis . These results suggest an independent origin for spring‐spawning ciscoes in each lake. Evidence is also provided for mtDNA introgression of Coregonus sardinella into C. lucinensis and C. albula in Lake Breiter Luzin. Postglacially, this species or at least a population which showed mtDNA introgression has colonized the Baltic Sea basin up to the glacial margin that was located between Lakes Stechlin and Breiter Luzin.     

Feeding ecology and habitat preferences of the catfish genus Trichomycterus in low‐order streams of the Colombian Andes

Six lower order streams in the south‐west of Colombia were sampled on a monthly basis in order to determine the status of Trichomycterus species in relation to their food supply (macroinvertebrates), and physico‐chemical habitat. Fishes were sampled by electrofishing and samples taken for dietary analysis. Macroinvertebrates were collected using a Surber sampler. Trichomycterus spp. populations were present in all streams in habitats ranging from soft to hard substrata and from relatively stagnant waters to fast flowing streams. The average density of the fishes ranged from 0·06 to 1·14 individuals m⁻² with peaks in population corresponding to recruitment of individuals of <1 g. Trichomycterus spp. were found to be benthic carnivores with a diet mostly of aquatic insects. The index of relative importance for the dietary items was 35·0, 10·5, 1·9 and 7·8% for Chironomidae, Trichoptera, Ephemeroptera and Oligochaeta respectively. Combined with physical habitat data, ordinations of fishes and macroinvertebrate data suggested that differences in abundance among sites were driven by stream size and flow regime, indicating dominance of the physical habitat, although a high correlation between Trichomycterus spp. and Chironomidae abundances ( r  = 0·81, P  = 0·049) was also recorded.     

Evidence for secondary planktonic transport of post‐larvae of seagrass‐associated King George whiting

Stomach contents and stable isotope analyses were used to determine if secondary planktonic dispersal of King George whiting Sillaginodes punctata post‐larvae from shallow inshore habitats in a large embayment in south‐eastern Australia was initiated by wave disturbance. Benthic harpacticoid copepods, which live in and amongst seagrass shoots, were found in the stomachs of S. punctata caught offshore in the plankton only during rough weather. Stable isotope analyses showed that the base of nutritional support, estimated from values of δ¹³C, of S. punctata collected in the plankton changed significantly during rough (waves > 0·25 m) compared to calm (waves < 0·25 m) weather conditions. Values of δ¹³C collected from S. punctata in the plankton during rough weather were more consistent with S. punctata values found in the seagrass. Sillaginodes punctata collected in the plankton and seagrass during rough and calm weather failed to show differences in δ¹⁵N values. Dietary and isotope analyses support a model whereby newly arrived S. punctata larvae can be resuspended from seagrass beds and dispersed offshore by wave action during onshore winds. Secondary planktonic dispersal in S. punctata would provide a mechanism by which seagrass beds further inside Port Phillip Bay are colonized.     

Inter‐individual differences in rates of routine energy loss and growth in young‐of‐the‐year juvenile Atlantic cod

Inter‐individual differences in rates of routine (non‐feeding) metabolism and growth were evaluated in young‐of‐the‐year (YOY) juvenile Atlantic cod Gadus morhua . Rates of O₂ consumption, CO₂ production and ammonia (TAN) excretion were measured in 64, 25–43 mm standard length ( L _S) YOY growing at different rates (0·27–0·47 mm day⁻¹) in a common rearing tank. Parameter rates ( y ) increased allometrically ( y = a·M^b ) with increasing body mass ( M ) with b ‐values for O₂ production, CO₂ consumption and TAN excretion equal to 0·81, 0·89 and 0·56, respectively. In some cases, residuals from these regressions were significantly negatively correlated to fish growth rate. In no cases did residuals of parameter rates increase with increasing growth rate. These data suggest that, during unfed periods, relatively fast‐growing fish were more metabolically efficient than slower‐growing fish from the same cohort. The fish condition factor, derived from     , also significantly decreased with increasing growth rate. Results indicated differences in both the rates of routine energy loss and the patterns of growth allocation among YOY Atlantic cod. Since these physiological attributes were positively correlated with growth rate, they may be indicative of 'survivors' in field populations.     

Variation in the sex ratio, size and age of longfinned eels within and among coastal catchments of south‐eastern Australia

Longfinned eels Anguilla reinhardtii were captured by both fishery‐dependent and independent sampling methods from three rivers in New South Wales, south‐eastern Australia. Sex ratios, catch per unit effort and population age and total length structure were examined in three zones (fresh water and upper and lower tidal) in the Hacking, Hawkesbury and Clarence Rivers. Females were found in relatively high proportions in all zones, ranging from 97% in a freshwater (non‐tidal) site down to 59% in a tidal site. Males were found primarily in tidal zones (only two of the 677 longfinned eels caught in non‐tidal fresh water were males), with the greatest proportions being found in the brackish upper tidal areas. The mean number of fish captured per trap was higher in the fresh water and upper tidal zones than in the lower tidal zones. The mean ±  s . e . age, 17·9 ± 0·3 years, and age range, 5–52 years for females were significantly higher than those of males 12·2 ± 0·4 years; range 5–22 years, which is typical of other anguillid species. Longfinned eels captured in fresh water were found be significantly larger and older than those in tidal zones due to the almost exclusive predominance of females.     

A new technique to gather 3‐D spatial information using a single camera

A new technique using a single camera and shadows to determine 3‐D spatial positions of fishes in the laboratory is described. The apparatus consisted of a large aquarium (2·0 × 1·5 × 0·4 m), a wide‐angle camera mounted above and two light sources to cast shadows to either side of the fish. Using image analysis and vector mathematics, aquarium objects were plotted within 1·5 cm of their actual location along the x ‐, y ‐ and z ‐axis. The technique was also successful in quantifying changes in 3‐D spatial pattern of juvenile fish, Atlantic cod Gadus morhua (7·4–8·6 cm standard length, L _S) and cohabitant piscivorous shorthorned sculpin Myoxocephalus scorpinus (12·0–25·8 cm L _S), at these same viewing fields. The new technique should have a wide application, largely because it is potentially less expensive, laborious and invasive than alternative methods for determining 3‐D positions of fishes.     

Feeding preference and deterrence in rabbitfish Siganus fuscescens for the cyanobacterium Lyngbya majuscula in Moreton Bay, south‐east Queensland, Australia

Rabbitfish Siganus fuscescens preferences for Lyngbya majuscula collected from three bloom locations in Moreton Bay, Queensland, Australia, were tested along with a range of local plant species in the laboratory. Consumption of L. majuscula by fish did not differ between wild and captive‐bred fish ( P  = 0·152) but did differ between bloom location ( P  = 0·039). No relationship was found between consumption rates and lyngbyatoxin‐a concentration ( r ² = 0·035, P  = 0·814). No correlation existed between C : N and proportion of food consumed when all food types were analysed statistically, whereas a clear correlation was observed when L. majuscula was removed from the calculations. In simulated bloom conditions, fish avoided ingestion of L. majuscula by feeding through gaps in the L. majuscula coverage. Both wild and captive‐bred S. fuscescens showed a distinct feeding pattern in 10 day no‐choice feeding assays, with less L. majuscula being consumed than the preferred red alga Acanthophora spicifera . Lyngbya majuscula however, was consumed in equal quantities to A. spicifera by wild S. fuscescens when lyngbyatoxin‐a was not detectable. Wild fish probably do not preferentially feed on L. majuscula when secondary metabolites are present and are not severely impacted by large L. majuscula blooms in Moreton Bay. Furthermore, poor feeding performance in both captive‐bred and wild S. fuscescens suggests that they would exert little pressure as a top‐down control agent of toxic L. majuscula blooms within Moreton Bay.     

Phylogeography of the Turkish brown trout Salmo trutta L.: mitochondrial DNA PCR‐RFLP variation

In the present study, mitochondrial DNA polymerase chain reaction‐restriction fragment length polymorphism (PCR‐RFLP) assay was used to assess the phylogenetic and phylogeographic relationships among 27 brown trout Salmo trutta populations from Turkey. The complete NADH 5/6 region and a second segment comprising the cytochrome b gene and D‐loop of mtDNA amplified by PCR were digested with six and five restriction enzymes, respectively. A total of 27 haplotypes were observed and divided into three major phylogenetic assemblages, namely Danubian (DA), Adriatic (AD) and a newly proposed Tigris (TI) lineage. The timing of the net nucleotide divergence between the major lineages along with the geological history of Turkey suggested pre‐Pleistocene isolation of the Turkish brown trout and provided evidence that Turkey could be considered as a centre of diversification for these lineages. The average haplotype diversity (0·1397) and the nucleotide diversity (0·000416) within populations were low in comparison to the observed interpopulation nucleotide diversity (0·021266). PCR‐RFLP analysis showed that most of the mtDNA sequence variation found in the Turkish brown trout populations was imputable to differences among lineages. On the other hand, there was also an obvious relationship between geographical distribution of the populations and their clustering. The present study showed that brown trout populations from Turkey are highly divergent and mainly have a unique genetic profile that could be used for conservation and management purposes.     

Differential population history in the migratory catfishes Brachyplatystoma flavicans and Pseudoplatystoma fasciatum(Pimelodidae) from the Bolivian Amazon assessed with nuclear and mitochondrial DNA markers

The catfishes Brachyplatystoma flavicans ( n  = 49) and Pseudoplatystoma fasciatum ( n  = 69) showed comparable low allozyme diversities ( H _e = 0·012 and 0·009–0·028, respectively), but contrasting PCR‐RFLP restriction site mitochondrial DNA diversities (three haplotypes: π = 0·034–0·092 and five haplotypes: π = 0·001–0·023, respectively) in the Rio Ichilo and Beni (Bolivia). Genetic homogeneity between samples was high for B. flavicans and lower for P. fasciatum . Based on mitochondrial diversity, both species probably experienced a historic population reduction but at different time scales.     

Temporal and spatial variation in potential and realized growth rates of age‐0 year northern rock sole

The possibility of prey limitations on the growth performance of age‐0 year northern rock sole Lepidopsetta polyxystra was evaluated at three sites along the north‐east coast of Kodiak Island, Alaska, U.S.A., by comparison of observed to potential growth rates. Growth potential was measured in the laboratory across the range of temperatures encountered by this species during the first summer of life. Growth potential ( g _L, mm day⁻¹) increased with water temperature (T) between 2 and 13° C, according to: g _L = 0·0151 + 0·3673·log₁₀(T). There were significant differences in growth rate between the three field sites such that Holiday Beach fish were 7·1 mm longer than Shakmanof Beach fish by mid‐September, with Pillar Creek Cove fish of intermediate size. Temperature differences between sites accounted for less than half of this variation. The remainder may have been related to differences in prey availability among the sites in association with observed differences in sediment characteristics. In addition to the spatial variability, there was significant monthly variation in growth performance. Realized growth rates between July and August were in excess of 85% of potential. Between August and September, however, realized growth fell to 43–71% of potential indicating a decline in conditions for growth. The spatial variation in growth rates was not density‐dependent as the site with the highest fish densities (Holiday Beach) also supported the highest growth rates. The available data indicates that for this subtidal species, interannual variation in growth may be more important than site variation.     

Genetic isolation between Atlantic and Mediterranean albacore populations inferred from mitochondrial and nuclear DNA markers

Genetic population structure of Atlantic and Mediterranean albacore Thunnus alalunga was investigated using nucleotide sequence variations of the glucose‐6‐phosphate dehydrogenase gene intron ( G6PD ) and the mitochondrial DNA (mtDNA) D‐loop region ( Dloop ). Restriction analysis using Ase I digestion detected two major restriction types ( A and B ) at the Dloop locus with strong frequency differences between Atlantic and Mediterranean samples. Thirty‐six individuals of 100 Mediterranean albacore were of the B type whereas no B type individuals were found in the Atlantic samples ( n  = 102). Phylogenetic analysis using nucleotide sequence data of the Dloop locus indicated that the B type lineage recently arose from the ancestral A lineage in the Mediterranean Sea and has not dispersed into the Atlantic Ocean. The frequencies of two alleles ( L and S ) at the G6PD locus were significantly different between the samples from the Atlantic ( L  = 0·495) and the Mediterranean ( L  = 0·725), but no significant heterogeneity was observed between mtDNA‐ A and ‐ B types of the Mediterranean sample. These molecular data indicate that gene flow between the Atlantic and Mediterranean albacore populations have been considerably restricted and strongly suggest these populations should continue to be treated as two distinct management units.     

Mackerel icefish size and age differences and long‐term change at South Georgia and Shag Rocks

This study analysed the total length ( L _T)‐frequency distribution of mackerel icefish Champsocephalus gunnari at South Georgia and Shag Rocks from nine bottom trawl surveys at South Georgia and eight at Shag Rocks between 1987 and 2002. The estimated mean L _T of age‐classes 1+, 2+, 3+ and 4+ years during January were, respectively, 14·7, 23·5, 29·8 and 35·1 cm at South Georgia. Age‐classes 1+, 2+ and 3+ years were 18·3, 26·2 and 33·8 cm at Shag Rocks. The derived Bertalanffy growth parameters for South Georgia were: L _∞ = 51·7 cm, k  = 0·27 and t ₀ = −0·26. The mean L _T of each age‐class of C. gunnari at Shag Rocks was significantly larger than at South Georgia, equivalent to c . 5 months growth, although the annual growth in L _T was similar. This is further evidence that C. gunnari hatched earlier at Shag Rocks. At South Georgia, the mean L _T of age‐classes 1+ and 3+ years were correlated, and significantly decreased between 1987 and 2002, and were smaller following warmer summers. This decrease in the size of C. gunnari may be the result of reduced food availability linked to climate warming.     

Short‐term freshwater exposure benefits sea lice‐infected Atlantic salmon

Atlantic salmon Salmo salar were infected with sea lice Lepeophtheirus salmonis (0·08 ± 0·007 sea lice g⁻¹) over a period of 4 h. Both infected and non‐infected fish were swim tested in sea water (SW) and fresh water (FW). The ventral aorta of each fish was fitted with a Doppler cuff in order to measure cardiac output, stroke volume and heart rate during swim testing. Blood samples were taken at rest and after exercise. Critical swimming speed of infected fish in SW (2·14 ± 0·08 body lengths, bl s⁻¹) was significantly lower ( P  < 0·05) than infected fish switched to FW (2·81 ± 0·08 bl s⁻¹) and non‐infected fish in SW (2·42 ± 0·04 bl s⁻¹) and FW (2·61 ± 0·08 bl s⁻¹). Cardiac and blood results indicated infected fish exposed to FW did experience stress, but relief from osmotic and ionic distress probably reduces energy expenditure, allowing the increase in performance. As the performance of sea lice‐infected fish improved upon transfer to FW, it is likely that heavily infected salmonids do return to FW to restore compromised osmotic and ionic balance, and remove sea lice in the process.     

Effects of temperature, body size and feeding on rates of metabolism in young‐of‐the‐year haddock

The mean rate of oxygen consumption (routine respiration rate, R _R, mg O₂ fish⁻¹ h⁻¹), measured for individual or small groups of haddock Melanogrammus aeglefinus (3–12 cm standard length, L _S) maintained for 5 days within flow‐through respiratory chambers at four different temperatures, increased with increasing dry mass ( M _D). The relationship between R _R and M _D was allometric ( R _R = α  M ^b ) with b values of 0·631, 0·606, 0·655 and 0·650 at 5·0, 8·0, 12·0 and 15·0° C, respectively. The effect of temperature ( T ) and M _D on mean R _R was described by     indicating a Q ₁₀ of 2·27 between 5 and 15° C. Juvenile haddock routine metabolic scope, calculated as the ratio of the mean of highest and lowest deciles of R _R measured in each chamber, significantly decreased with temperature such that the routine scope at 15° C was half that at 5° C. The cost of feeding ( R _SDA) was c . 3% of consumed food energy, a value half that found for larger gadoid juveniles and adults.     

First record of Polyprion oxygeneios(Perciformes: Polyprionidae) for the south‐west Atlantic and a northernmost range extension

The occurrence of Polyprion oxygeneios (Perciformes: Polyprionidae) is recorded for the first in the south‐west Atlantic. Twenty specimens were caught off Rio Grande do Sul (33°41·8'–34° 15·3' S, 370–854 m depth) during winter cruises of the commercial fishing fleet.     

Population structure of lake‐type and river‐type sockeye salmon in transboundary rivers of northern British Columbia

The population structure of 'lake‐type' and 'river‐type' sockeye salmon Oncorhynchus nerka , primarily in transboundary rivers in northern British Columbia, was examined with a survey of microsatellite variation. Variation at 14 microsatellite loci was surveyed from c . 3000 lake‐type and 3200 river‐type sockeye salmon from 47 populations in six river drainages in British Columbia. The mean F _ST for the 14 microsatellite loci and 47 populations was 0·068, and 0·034 over all river‐type populations. River‐type sockeye salmon were more genetically diverse than lake‐type sockeye salmon, with expected heterozygosity of river‐type sockeye salmon 0·72 and with an average 12·7 alleles observed per locus, whereas expected heterozygosity of lake‐type sockeye salmon was 0·65 with and average 10·5 alleles observed per locus. River drainage of origin was a significant unit of population structure. There was clear evidence of genetic differentiation among river‐type populations of sockeye salmon from different drainages over a broad geographic range in British Columbia.     

Enhancement of pH‐resistant iron‐binding activity in supernatants of rainbow trout blood leucocytes by in vitro treatment with phorbol‐12‐myristate‐13‐acetate

Leucocyte lysates from rainbow trout Oncorhynchus mykiss showed an iron‐binding activity that was retained even if the samples were exposed to an acid pH (4·5). Iron‐binding activity of leucocyte supernatants was enhanced by the presence of 1 μg ml⁻¹ phorbol‐12‐myristate‐13‐acetate in the cell medium.