Microbial Dynamics Associated with Multiphasic Decomposition of 14C-Labeled Cellulose in Soil

Abstract Recent emphasis on residue management in sustainable agriculture highlights the importance of elucidating the mechanisms of microbial degradation of cellulose. Cellulose decomposition and its associated microbial dynamics in soil were investigated in incubation experiments. Population dynamics of actinomycetes, bacteria, and fungi were monitored by direct counts. Populations of oligotrophic bacteria in cellulose-amended soil were determined by plate count using a low C medium containing 4 mg C liter⁻¹ agar, and copiotrophs using a high C medium. Cumulative ¹⁴CO₂ evolution from ¹⁴C-labeled cellulose was best described by a multiphasic curve in a 28-day incubation experiment. The initial phase of decomposition was attributed mainly to the activity of bacterial populations with a low oligotroph-to-copiotroph ratio, and the second phase mainly to fungal populations. An increase in oligotroph-to-copiotroph ratio coincided with the emergence of a rapid ¹⁴CO₂ evolution stage. Streptomycin reduced ¹⁴CO₂ evolution during the first phase and prompted earlier emergence of the second phase, compared to the control. Cycloheximide initially promoted ¹⁴CO₂ evolution but subsequently had a lasting negative effect on ¹⁴CO₂ evolution. Cycloheximide addition significantly increased bacterial biomass and resulted in substantially stronger oscillation of active bacterial populations, whereas it initially reduced, and then stimulated, active fungal biomass. The observed changes in ¹⁴CO₂ evolution could not be explained by observed shifts in fungal and bacterial biomass, probably because functional groups of fungi and bacteria could not be distinguished. However, it was suggested that oligotrophic bacteria prompted activation of cellulolytic enzumes in fungi and played an important role in leading to fungal dominance of cellulose decomposition. Received: 2 October 1995; Accepted: 10 February 1996     

In-vitro radiometry and microscopy for sensitive measurement of toxicity in activated sludge

Summary Inhibitory effects of an anti-microbial agent on a model activated sludge system were examined. Using microbial counts and¹⁴CO₂ evolution from radiolabeled starch and cellulose, inhibitory effects of small concentration increments of HgCl₂ could be monitored as could the rapid recovery of microbial viability after 24 h. Mercury dissipation accounted for part of this recovery but bacterial resistance to mercury is also implicated.     

Inheritance of cellulose- and lignin-degrading ability as well as endoglucanase isozyme pattern in Dichomitus squalens

Summary The progeny of Dichomitus squalens CBS-432-34 is heterogeneous with respect to specific growth rate on glucose, cellulolytic ([U¹⁴C]cellulose ¹⁴CO₂) and ligninolytic ([¹⁴C]synthetic lignin ¹⁴CO₂) activities with little correlation between these metric characters. Variations do not show clear-cut phenotypes but rather a continuous range between extreme values pointing to multigenic control of these characters. Most homocaryons showed decreased cellulolytic or ligninolytic activity compared to the parent dicaryon. However a few homocaryons were comparable or even superior to the parent dicaryon for ligninolytic or cellulolytic activity with no correlation between each factor. Strains with reduced cellulolytic activity and altered isozyme patterns of endoglucanases were isolated in the progeny of D. squalens CBS-432-34. While the parent strain produced three main endoglucanase multiple enzymes designated EnI, EnII and EnIII, several strains in the progeny produced a different multiple enzyme pattern. In contrast to the quantitative ability to degrade cellulose, multiple enzyme pattern variation in the progeny did not show continuous variations. characterization of heterocaryon phenotypes derived from Ien⁺ and Ien 1 homocaryons and first filial generation (f1) analysis showed that genetic control of the multiple enzyme pattern (Ien 1 phenotype) in D. squalens is complex. Offprint requests to: E. Odier     

Respiratory activity of alginate-encapsulated Pseudomonas fluorescens cells introduced into soil

Summary Alginate-entrapped cells of Pseudomonas fluorescens were introduced into soil microcosms to evaluate their respiratory activity (O₂ consumption and CO₂ evolution) and survival during a 14-day incubation period at 20°C. Alginate-entrapped cells and cells resuspended in sterile distilled water and introduced into sterile soil exhibited relatively similar O₂ consumption/CO₂ evolution and survival over the 14-day period. The same treatments in non-sterile soil exhibited lower respiratory activity and a population density decrease of about 2.0 Log. cfu/g after 14 days. Alginate-entrapped bacterial cells may be a useful method for introducing genetically-engineered and non-engineered bacterial strains into the soil environment.     

Decomposition of 14C-labeled cellulose substrates in litter and soil from a beechwood on limestone

The decomposition of three different ¹⁴C-labeled cellulose substrates (plant holocellulose, plant cellulose prepared from ¹⁴C-labeled beech wood (Fagus sylvatica) and bacterial cellulose produced by Acetobacter xylinum) in samples from the litter and mineral soil layer of a beechwood on limestone was studied. In a long-term (154 day) experiment, mineralization of cellulose materials, production of ¹⁴C-labeled water-soluble compounds, and incorporation of ¹⁴C in microbial biomass was in the order Acetobacter cellulose > holocellulose > plant cellulose in both litter and soil. In general, mineralization of cellulose, production of ¹⁴C-labeled water-soluble compounds, and incorporation of ¹⁴C in microbial biomass were more pronounced, but microbial biomass ¹⁴C declined more rapidly in litter than in soil. In short-term (14 day) incubations, mineralization of cellulose substrates generally corresponded with cellulase and xylanase activities in litter and soil. Pre-incubation with trace amounts of unlabeled holocellulose significantly increased the decomposition of ¹⁴C-labeled cellulose substrates and increased cellulase activity later in the experiment but did not affect xylanase activity. The sum of ¹⁴CO₂ production, ¹⁴C in microbial biomass, and ¹⁴C in water-soluble compounds is considered to be a sensitive parameter by which to measure cellulolytic activity in soil and litter samples in short-term incubations. Shorter periods than 14 days are preferable in assays using Acetobacter cellulose, because the decomposition of this substrate is more variable than that of holocellulose and plant cellulose.Offprint requests to: S. Scheu.     

Photorespiration studies in Cycas circinalis L. and Cycas beddomei Dyer

Photosynthetic carboxylating enzymes and the effects of light and temperature on ¹⁴CO₂ efflux in two species of gymnosperm leaves were studied. The activity of RuBP carboxylase was high and that of PEP carboxylase was very low when compared to C₄ plants. The CO₂ compensation point was high. ¹⁴CO₂ efflux was greater in light than in darkness and the ratio (L/D) increased with increase in temperature and light intensity. The inhibitors of glycolate metabolism showed decreased ¹⁴CO₂ evolution in light while dark respiration was unaffected. It is concluded that both Cycas circinalis, L. and Cycas beddomei Dyer are C₃ plants.     

Activity and species composition of aerobic methanotrophic communities in tundra soils

The low-temperature, methane-oxidizing activities and species composition of methanotrophic communities in various tundra bog soils were investigated by radioisotopic and immunofluorescent methods. Methanotrophic bacteria carried out the methane oxidation process through all horizons of seasonally thawed layers down to permafrost. The highest activity of the process has been observed in the water surface layer of overmoistured soils and in water-logged moss covers. Up to 40% of¹⁴CH₄ added was converted into¹⁴CO₂, bacterial biomass, and organic exometabolites. By immunofluoresecent analysis it was demonstrated that the representatives of I+X (Methylomonas, Methylobacter, andMethylococcus) and II (Methylosinus, Methylocystis) methanotrophic groups occurred simultaneously in all samples at 61.6% and 38.4%, respectively. The number of methane-oxidizing bacteria in the ecosystems studied was 0.1–22.9×10⁶ cells per gram of soil. Methanotrophic organisms ranged from 1% to 23% of the total bacterial number.     

Growth,14CO2 fixation,activites of photosystems,ribulose 1,5-bisphosphate carboxylase and nitrate reductase in trees as affected by simulated acid rain

In seedlings of the tropical tree speciesErythrina variegata Lam. andHardwickia binata Roxb. exposed to different acidic mist (H₂SO₄, pH 5, 3 and 2) for 5 d significant reduction in seedling growth, biomass accumulation and¹⁴CO₂ fixation were determined. In isolated chloroplasts a decrease in the activities of photosystem 2 and whole electron transport chain was observed only at pH 3 and 2, but no significant change in photosystem 1 activity was observed. SDS-PAGE analysis of crude leaf extracts of ribulose 1,5-bisphosphate carboxylase (RuBPC) indicated a significant loss of 55 and 15 kDa polypeptides at pH 2 inErythrina. The reduction in the RuBPC activity in seedlings grown under acidic mists correlated well with CO₂ fixation.     

Cu uptake in a cyanobacterium: Fate of selected photochemical reactions

Cu uptake in the diazotrophic cyanobacteriumNostoc calcicola Bréb. was accompanied by inhibitions in the in vivo activities of photosystem (PS) II, PS I,¹⁴CO₂-fixation, and decline in the ATP pool. Cyanobacterial cells, while saturated for Cu uptake within 1 h at 40 M Cu, showed more than 50% inhibition of PS II and 95.4% of¹⁴CO₂ fixation compared with only 15.5% decrease in the PS I activity. The total extractable ATP content also declined by 32.2% within 1 h. In a subsequent follow-up study lasting 72 h, PS II activity and¹⁴CO₂ fixation showed complete inhibition, in contrast to 34.4% of PS I activity and 4.2% of ATP still remaining unaffected. The results have been discussed in the light of multiple effects of Cu during and subsequent to its uptake by the cyanobacterium.     

Carboxylation and mineralization ofm-cresol by a sulfate-reducing bacterial enrichment

An enrichment culture that anaerobically degradedm-cresol under sulfate-reducing conditions was obtained from an anoxic aquifer.m-Cresol removal by the culture was greatest when sulfate or thiosulfate served as electron acceptors; sulfite, nitrate, and CO₂ were poor substitutes for sulfate. A¹⁴C-labeled carboxylated intermediate was detected when the culture was given¹⁴C-labeled bicarbonate and nonlabeledm-cresol or nonlabeled bicarbonate and¹⁴C-labeledm-cresol. Metabolism of the carboxylated intermediate yielded¹⁴C-acetate, which was eventually converted to¹⁴CO₂. Trace quantities of methylbenzoic acid were also detected as a putativem-cresol intermediate. The importance of this dehydroxylated intermediate in the anaerobic degradation ofm-cresol is unclear, since an amendment of 2-methylbenzoic acid was not degraded by the culture. The stoichiometry of electron acceptor consumption and carbon mass balances confirm thatm-cresol was mineralized by the culture.     

Biosynthesis in isolatedAcetabularia chloroplasts II. Plastid pigments

Summary The plastid pigments — chlorophylls and carotenoids — of the alga,Acetabularia, have been chromatographically separated and identified. These pigments were found to become radio-active during incubations of an isolated chloroplast fraction with¹⁴CO₂. Specific activity calculations indicate that appreciable amounts of synthesis were occurringin vitro. The phytol and porphyrin moieties of chlorophyll a were both radioactive; thus the pigments were being formed completely from recent photosynthetic products. A comparison of the incorporation of¹⁴CO₂ into plastid pigmentsin vivo andin vitro suggests that the isolated chloroplasts form the pigments at their normalin vivo rates.     

Isotopic studies of carbohydrate metabolism during basidiospore germination in Schizophyllum commune

Summary The metabolism and fate of specifically labeled glucose-¹⁴C were compared to mannitol-l-¹⁴C and arabitol-l-¹⁴C during basidiospore germination of Schizophyllum commune on glucose-asparagine minimal broth. Glucose-l-¹⁴C metabolism led to more ¹⁴CO₂ evolution than glucose-6-¹⁴C in spores and the former activity increased upon germination. Liberation of ¹⁴CO₂ from glucose-3,4-¹⁴C increased at 8 h to 12 h of germination and exceeded the amount of radioactive ¹⁴CO₂ released from glucose-1-¹⁴C. The ¹⁴CO₂ released from glucose-2-¹⁴C increased continually during germination while only minor changes in ¹⁴CO₂ evolution occurred with glucose-6-¹⁴C. Unlabeled ethanol (0.25 M) inhibited ¹⁴CO₂ evolution with glucose-3,4-¹⁴C and ungerminated spores and this inhibition disappeared upon germination.More ¹⁴CO₂ was evolved from labeled glucose during germination and less radioactivity became associated with cellular material. Of the latter, alcohol-soluble extracts of spores or germlings contained mainly radioactive trehalose, less mannitol and little or no labeled arabitol, and this decreased upon germination. Germlings also converted more radioactive glucose-¹⁴C into KOH-insoluble material and KOH-soluble components. Spores or germlings converted arabitol-1-¹⁴C primarily into trehalose and this was not the case for mannitol-1-¹⁴C.     

Effects of glycerol on the growth,adhesion, and cellulolytic activity of rumen cellulolytic bacteria and anaerobic fungi

The effect of glycerol on the growth, adhesion, and cellulolytic activity of two rumen cellulolytic bacterial species,Ruminococcus flavefaciens andFibrobacter succinogenes subsp.succinogenes, and of an anaerobic fungal species,Neocallimastix frontalis, was studied. At low concentrations (0.1–1%), glycerol had no effect on the growth, adhesion, and cellulolytic activity of the two bacterial species. However, at a concentration of 5%, it greatly inhibited their growth and cellulolytic activity. Glycerol did not affect the adhesion of bacteria to cellulose. The growth and cellulolytic activity ofN. frontalis were inhibited by glycerol, increasingly so at higher concentrations. At a concentration of 5%, glycerol totally inhibited the cellulolytic activity of the fungus. Thus, glycerol can be added to animal feed at low concentrations.     

Aerobic and anaerobic microbial activity in deep subsurface sediments from the savannah river plant

Methanogenesis, sulfate reduction, and rates of carbon mineralization were determined for samples derived at different depths from four cores drilled at the Savannah River Plant, Aiken South Carolina. Three‐gram subsamples of the sediments were dispensed to 10‐mL serum bottles under 5% H₂/95% N₂ and amended with 0.5 mL degassed distilled water with or without the following solutes: formate plus acetate, bicarbonate, lactate, and radiolabeled sulfate, glucose, and Índole. After incubating 1 to 5 days, the sediments were assayed for methane, H₂, ³⁵S, and ^I4CO₂. No methanogenesis was detected at any depth in any core and sulfate was rarely reduced. Evolution of ¹⁴CO₂ from glucose and indole was detected in sediments as deep as 262 and 259 m, respectively. At some depths the ¹⁴CO₂ evolution rate was comparable to that of surface soils; however, at other depths no ¹⁴CO₂ evolution could be detected. Injection of sterile air into anaerobic incubations increased rates of carbon mineralization at all depths that had demonstrated anaerobic activity and stimulated mineralization activity in sediments that were inactive anaerobically, suggesting a predominance of aerobic metabolism. Increasing the concentration of added glucose and indole often increased the resulting rates of ¹⁴CO₂ evolved from these substrates. Our data indicate that both aerobic and anaerobic microorganisms are present and metabolically active in samples from deep subsurface environments.     

The effect of ammonium and nitrate on CO2 assimilation,RuBP and PEP carboxylase activity and dry matter production in wheat

Photosynthetic¹⁴CO₂ assimilation, ribulose 1, 5-bisphosphate carboxylase (RuBPC), phosphoenol pyruvate carboxylase (PEPC) and dry matter (DM) production were examined in wheat under varying levels and forms of nitrogen.¹⁴CO₂ assimilation increased gradually after germination reaching a peak value at anthesis, followed by a sharp decline. A similar pattern was observed for both the carboxylases, RuBPC and PEPC activities. Increase in nitrogen levels, in general, brought about a significant increase over the control (zero-nitrogen) in¹⁴CO₂ assimilation, RuBPC, PEPC activities and DM production. There were no significant differences in RuBPC activity and¹⁴CO₂ assimilation with respect to the forms of nitrogen. Significantly higher PEPC activity and DM was observed in plants supplied with nitrate-nitrogen (NO₃-N), as compared to those supplied with ammonium-nitrogen (NH₄-N). The significance of PEPC activity in C₃ photosynthesis is discussed in relation to DM distribution.     

Inability of the human fecal microflora to metabolize the nonabsorbable fat substitute,olestra

Summary Olestra is a non-caloric fat substitute under review by the Food and Drug Administration. It consists of a mixture of octa-, hepta- and hexaesters of sucrose formed with long chain fatty acids. Previous studies showed olestra is not hydrolyzed by mammalian lipases and is not absorbed. The objective of this study was to evaluate the potential for colonic microflora to metabolize olestra after continued exposure. Neat and emulsified¹⁴C-[fatty acid] olestra was incubated for 72 h in both minimal and organically-enriched anaerobic media inoculated with feces from seven subjects who had consumed olestra (9 g per day) over a 3–4 week period.¹⁴C-sucrose and¹⁴C-glucose served as positive controls. Production of¹⁴CO₂,¹⁴CH₄,¹⁴C-volatile fatty acids (VFAs) and¹⁴C-long chain fatty acids (LCFAs) was determined. In addition, the ester distribution and fatty acid composition of olestra were examined before and after incubation. Significant quantities of¹⁴CO₂ and¹⁴C-VFAs were generated from the¹⁴C-sugars, indicating that the microflora were active under the incubation conditions. Furthermore, free oleic acid was extensively hydroxylated and hydrogenated. In contrast, no degradation products (gas, VFAs, LCFAs) or changes in the olestra resulting from bacterial activity were detected. These results indicate that under anaerobic conditions the colonic microflora of the humans, consuming olestra, did not metabolize olestra.     

Changes in specific radioactivity of sunflower leaf metabolites during photosynthesis in 14CO2 and 12CO2 at three concentrations of CO2

Summary Sunflower (Helianthus annuus L.) leaf discs were exposed to ¹⁴CO₂ or ¹⁴CO₂ followed by ¹²CO₂ at 21% O₂ and three different CO₂ concentrations. After intervals of up to 15 min, the specific activity of some photosynthetic intermediates was determined. At all CO₂ concentrations, the specific activity of 3-phosphoglyceric acid (3-PGA) increased most rapidly and after 15 min of ¹⁴CO₂ feeding was 92% (967 ppm CO₂), 87% (400 ppm CO₂) and 53% (115 ppm CO₂) of CO₂ supplied to the assimilation chamber. The specific activity of glycine, serine and the photorespiratory CO₂ was similar at all CO₂ concentrations, in aggreement with their proposed close metabolic relationship in the glycolate pathway. However, the kinetics of serine and glycine labelling suggested that serine was not totally derived from glycine. Because the specific activity of these glycolate-pathway intermediates was very differnet from that of 3-PGA at all CO₂ concentrations, not all of the carbon traversing this pathway came directly from the Calvin cycle. The non-equilibration of the 3-PGA with the feeding gas reflects the recycling of C from the glycolate pathway into the photosynthetic reduction cycle. Measurements of the rates of CO₂ evolution in the light and estimates of the C flux through the glycolate pathway suggest that the photorespiratory activity was high and similar at 115 ppm CO₂ and 400 ppm CO₂ but inhibited at 967 ppm CO₂.     

Biodegradation of methyl t-butyl ether by pure bacterial cultures

Three pure bacterial cultures degrading methyl t-butyl ether (MTBE) were isolated from activated sludge and fruit of the Gingko tree. They have been classified as belonging to the genuses Methylobacterium, Rhodococcus, and Arthrobacter. These cultures degraded 60 ppm MTBE in 1–2 weeks of incubation at 23–25 °C. The growth of the isolates on MTBE as sole carbon source is very slow compared with growth on nutrient-rich medium. Uniformly-labeled [¹⁴C]MTBE was used to determine ¹⁴CO₂ evolution. Within 7 days of incubation, about 8% of the initial radioactivity was evolved as ¹⁴CO₂. These strains also grow on t-butanol, butyl formate, isopropanol, acetone and pyruvate as carbon sources. The presence of these compounds in combination with MTBE decreased the degradation of MTBE. The cultures pregrown on pyruvate resulted in a reduction in ¹⁴CO₂ evolution from [¹⁴C]MTBE. The availability of pure cultures will allow the determination of the pathway intermediates and the rate-limiting steps in the degradation of MTBE. Received: 8 December 1995 / Received last revision: 5 August 1996 / Accepted: 12 August 1996     

Biodegradation of atrazine in surface soils and subsurface sediments collected from an agricultural research farm

The purpose of the present study was to assess atrazine (2-chloro-4-ethylamino-6-isopropylamino-s-triazine) mineralization by indigenous microbial communities and to investigate constraints associated with atrazine biodegradation in environmental samples collected from surface soil and subsurface zones at an agricultural site in Ohio. Atrazine mineralization in soil and sediment samples was monitored as ¹⁴CO₂ evolution in biometers which were amended with ¹⁴C-labeled atrazine. Variables of interest were the position of the label ([U-¹⁴C-ring]-atrazine and [2-¹⁴C-ethyl]-atrazine), incubation temperature (25°C and 10°C), inoculation with a previously characterized atrazine-mineralizing bacterial isolate (M91-3), and the effect of sterilization prior to inoculation. In uninoculated biometers, mineralization rate constants declined with increasing sample depth. First-order mineralization rate constants were somewhat lower for [2-¹⁴C-ethyl]-atrazine when compared to those of [U-¹⁴C-ring]-atrazine. Moreover, the total amount of ¹⁴CO₂ released was less with [2-¹⁴C-ethyl]-atrazine. Mineralization at 10°C was slow and linear. In inoculated biometers, less ¹⁴CO₂ was released in [2-¹⁴C-ethyl]-atrazine experiments as compared with [U-¹⁴C-ring]-atrazine probably as a result of assimilatory incorporation of ¹⁴C into biomass. The mineralization rate constants (k) and overall extents of mineralization (P _max ) were higher in biometers that were not sterilized prior to inoculation, suggesting that the native microbial populations in the sediments were contributing to the overall release of ¹⁴CO₂ from [U-¹⁴C-ring]-atrazine and [2-¹⁴C-ethyl]-atrazine. A positive correlation between k and aqueous phase atrazine concentrations (C _eq ) in the biometers was observed at 25°C, suggesting that sorption of atrazine influenced mineralization rates. The sorption effect on atrazine mineralization was greatly diminished at 10°C. It was concluded that sorption can limit biodegradation rates of weakly-sorbing solutes at high solid-to-solution ratios and at ambient surface temperatures if an active degrading population is present. Under vadose zone and subsurface aquifer conditions, however, low temperatures and the lack of degrading organisms are likely to be primary factors limiting the biodegradation of atrazine.Abbreviations C _eq solution phase atrazine concentration at equilibrium - C _s amount of atrazine sorbed - CLA [2-¹⁴C-ethyl]-atrazine - k first-order mineralization rate constant - K _d sorption coefficient - m slope - P _max maximum amount of CO₂ released - RLA [U-¹⁴C-ring]-atrazine     

Investigation of the origin of 0-methyl groups in griseofulvin using some14C-labelled substrates

I-^l4C-pyruvie acid, 3-¹⁴C-l-serine,¹⁴C-formic acid and¹⁴CO₂ were tested as possible sources of 0-methyl groups of griseofulvin produced byPenicillium griseofulvum. Entire radioactivity from pyruvic acid,l-serine and formic acid was found in the methoxyls of griseofulvin. By determining the activity of individual methoxyls its distribution was established, this being homogeneous only after formic acid.