A general purpose computer analysis system for chromatographic data

A manual integration system for the analysis of chromatographicdata is described. The analog output produced by an HPLC absorbancemonitor is passed to a non-inverting signal amplifier. Thisamplified signal is sent to an IBM PC where an analog to digitalconverter is used to digitize the data. A set of six computerprograms which collect, store and analyze these data are presented.This system was used to analyze the nucleotide content of theanaerobic organism Clostridium aceto-butylicum by strong anion-exchangeHPLC. Received on May 26, 1987; accepted on November 15, 1987     

A computer system for the analysis and synthesis of field potentials

It is shown how field potentials due to neuronal membrane processes can be computed by means of a digital computer system. The essence of the method consists in evaluating a discrete expression for the field potential as a function of membrane potentials. This expression is considered as a threedimensional convolution. In the computer system this convolution is performed by multiplication in the spatial Fourier domain. Introduction of a density function provides the possibility of evaluating in an easy way the field potential of a population of neurons. To demonstrate the applicability of the system, field potentials of different membrane potential configurations in the brain have been computed.     

A computer system automatic analysis of vectorcardiograms.

This computer system performs the analysis of orthogonal electrocardiograms for vectorcardiographic (VCG) display and classification. The data acquisition can be performed 'on-line' with the complete analysis in 'real-time', or off-line by processing a magnetic tape. The original computational methods for beat averaging and wave recognition are described. Some features, such as the quality of the visual display of the VCG traces, the availability of a measurement matrix allowing the quantitative analysis of the VCG and the use of a data bank for storage, retrieval and statistical studies make this system very efficient for clinical purposes, introducing the concept of 'Computer Assisted Vectorcardiography'.     

A conversational system for the computer analysis of nucleic acid sequences.

We present a conversational system for the computer analysis of nucleic acid and protein sequences based on the well-known Queen and Korn program (1). The system can be used by persons with only minimal knowledge of computers.     

A personal computer system for observation and analysis of copulatory behavior in small rodents

A personal computer system was developed for measuring values of copulatory behavior of small laboratory rodents. This system enabled us to get the analysis data of copulatory behavior of male rats as soon as possible after observation. This present system could be useful to measure other reproductive behavior of small rodents.     

A computer system for neurosurgical patient monitoring.

The variables monitored in intensive care units are generally late indicators of neurologic deterioration. A system based on a LINC-8 computer was therefore developed for on-line monitoring of evoked potentials, electroencephalography (EEG), and transcranial and transthoracic impedances as well as conventional parameters. Somatosensory evoked potentials are recorded at either 30 min or 1 h intervals. One minute epochs of EEG are analyzed every 10 min using a peak-detection algorithm. Impedances and conventional parameters are also monitored at 10 min intervals. In a study of 50 patients, the technical feasibility of this type of monitoring with a small laboratory computer has been demonstrated. In some instances, evoked potentials and EEG show changes prior to detectable neurologic changes. The study suggests that this type of monitoring can provide a valuable adjunct for evaluation of physiologic function in neurosurgical intensive care.     

An interactive computer system for the analysis of cell lineages.

We have developed an interactive computer system for analysing cell lineage data. It can be utilized in studies of cell motility, cell division, cell differentiation, and cell aging. It has enabled us to document the heterogeneity of human foreskin fibroblasts in culture and to propose that loss of proliferative potential may mean that cells enter a state of differentiation which makes them unable to respond to mitotic stimulation. Our method, which enables us to apply immunological and cytochemical probes after recording the history of a cell lineage, should allow us to define precisely features which uniquely distinguish cycling from noncycling cells on an individual cell basis.     

A photobioreactor system for computer controlled cultivation of microalgae

A bioreactor system was developed for the cultivation of the microalgae Synechocystis sp. PCC6803 under controlled physiological conditions. The determination of the actual physiological state of the microalgae was provided by inline recording of chlorophyll fluorescence parameters. A feed-back loop was employed to keep the microalgae in a defined physiological state. For the construction of this feed-back loop, the temporal behaviour of the system was investigated using changes in light conditions (as caused by modulated UVB radiation) as input signal and chlorophyll fluorescence as output signal. The reproducibility of the responses was high. Kinetic analysis based on curve fitting revealed two time constants in the UVB-induced responses. The knowledge of these time constants was utilised for the development of an efficient feed-back loop which allows the cultivation of the microalgae in a defined physiological state. This new process strategy (called physiostat) was successfully tested. The performance in a culture of growing microalgae is shown.     

A computer program package for relative survival analysis

A computer program package has been constructed for use in patient survival analyses for chronic diseases based on aggregated data. The central concept of the analyses--the relative survival rate--is the ratio of the observed survival rate of the patients to the survival rate expected in a group in the general population similar to the group of patients at the beginning of the follow-up (interval), with respect to age, sex and calendar time. This quantity is used to measure patient survival adjusted for the effect of mortality attributable to the competing risks of death without employing information on causes of death of individual patients. The package contains three alternative methods of estimating the relative survival rates, two different ways of estimating the expectation of life for the patients, and five methods of testing the relative survival patterns using information on the whole follow-up period. Conventional survival and competing risk analysis can also be performed with the package. It is hoped that the package will facilitate standardization of statistical methodology and terminology in long-term survival studies for chronic diseases.     

A computer program for characterizing root system branching patterns

A computer program is presented which measures the length, branching patterns and distribution of link length within a root system. The program skeletonizes digitized images of root systems, loads these images into a binary tree data structure and uses this data structure to characterize the root systems. Measurements of the root length and topological parameters of root systems of Senecio vulgaris made by hand and by computer program were linearly related, with r² values greater than 0.99 in all cases.     

A computer graphics program system for protein structure representation

We have developed a computer graphics program system for the schematic representation of several protein secondary structure analysis algorithms. The programs calculate the probability of occurrence of alpha-helix, beta-sheet and beta-turns by the method of Chou and Fasman and assign unique predicted structure to each residue using a novel conflict resolution algorithm based on maximum likelihood. A detailed structure map containing secondary structure, hydrophobicity, sequence identity, sequence numbering and the location of putative N-linked glycosylation sites is then produced. In addition, helical wheel diagrams and hydrophobic moment calculations can be performed to further analyze the properties of selected regions of the sequence. As they require only structure specification as input, the graphics programs can easily be adapted for use with other secondary structure prediction schemes. The use of these programs to analyze protein structure-function relationships is described and evaluated.     

A computer system for the synchronous staged analysis of the indices of bioelectrical activity and systemic hemodynamics

Programmes have been designed for computerized assessment of bioelectrical impulse amplitude, duration and frequency, simultaneously with instant indexes of systolic, diastolic arterial pressure and heart rate.     

A rapid computer analysis for multicomponent DNA reassociation kinetics

An iterative program, Gaushaus, has been adapted to analyze complex DNA reassociation kinetics. With valid experimental data, rapid convergence to a solution is always achieved by this program even when the starting parameters are grossly in error. The output of the program also includes useful statistical information.     

A versatile digital computer program for non-linear regression analysis

1.

1. A general purpose digital computer program is described for application to biological experiments that require a non-linear regression analysis. The mathematical function, or model, to be fitted to a given set of experimental data is written as a section within the program. Given initial estimates for the parameters of the function, the program uses an iterative procedure to adjust the parameters until the sum of squares of residuals has converged to a minimum.