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1.
The elimination of halide ion from either 5-bromo- or 5-iodo-5,6-dihydrouracil to yield uracil is a slow reaction which, in the case of 5-iodo-5,6-dihydrouracil, is 400 times slower than the enzymatic release of 125I? from 5-[125I]iodouracil. The elimination of HBr from 5-bromo-5,6-dihydrouracil is subject to general base catalysis by tris(hydroxymethyl)aminomethane (k2Tris base = 11 × 10?4M?1 min?1, 37°C, ionic strength 1.0 M). At pH values near and above physiological, both the bromo- and iododihydropyrimidines are subject to hydrolysis of the dihydropyrimidine ring, a reaction which parallels halide elimination to yield uracil. The resulting 2-halo-3-ureidopropionate then cyclizes via intramolecular attack of the ureido oxygen atom to yield halide ion and 2-amino-2-oxazoline-5-carboxylic acid as final products. In dilute hydroxide ion, the kinetics of 5-bromo-5,6-dihydrouracil hydrolysis (25°C, ionic strength 1.0 M) show a change in rate-determining step as a function of increasing hydroxide ion concentration, a result which, as in the case of 5,6-dihydrouracil, can be explained in terms of the formation of a tetrahedral addition intermediate. The data are discussed relative to enzymatically catalyzed halopyrimidine dehalogenation.  相似文献   

2.
An attempt to estimate the importance of general acid-base catalysis in enzymic catalysis has been made, using the hydrolysis of the ester group of N,O-diacetylserinamide as a model for the deacylation of acyl-chymotrypsins. General base catalysis of this reaction by imidazole is estimated to reduce the activation energy by at least 31 kJ mol?1. The rate of reaction, however, is not greatly enhanced because of an unfavourable change in the entropy of activation from ?132 to ?197 JK?1 mol?1. At about 300 K, a typical temperature for enzyme-catalysed reactions, the reduction in activation energy would cause a rate enhancement of about 3 × 105-fold if the unfavourable entropy change did not occur. For specific acyl-chymotrypsins the entropy of activation for deacylation is about ?89 J K?1 mol?1, allowing the full effect of general base catalysis by imidazole to be realized. It is, therefore, postulated that in the active site of an enzyme, a properly oriented imidazole side chain may catalyse the rate of a reaction 105-fold by general base catalysis.  相似文献   

3.
The hydrolyses of p-nitrotrifluoroacetanilide catalyzed by water and imidazole were examined at 70°C. The pH-rate constant profile of the hydrolysis in H2O was examined in the pH range 0.0–11.4. The hydrolysis was independent of pH in the region from pH 1.0 to 4.5, presumably a water-catalyzed reaction. The rate constant and the D2O solvent isotope effect for this reaction were 1.0 × 10?4 sec?1 and 3.7, respectively. Both natural imidazole and imidazolium cation catalyzed hydrolysis. The rate constant of the hydrolysis catalyzed by neutral imidazole was determined to be 5.4 × 10?3M?1 sec?1 and the D2O solvent isotope effect was 1.8.  相似文献   

4.
The effect of sulfhydryl oxidase on the rate of disulfide bond formation and polypeptide chain folding in reductively denatured chymotrypsinogen A has been investigated using an immobilized zymogen preparation and a cylindrical quartz flow-through fluorescence cell. Enzymatic oxidation of the 10 sulfhydryl groups in reduced chymotrypsinogen followed first order kinetics at pH 7.0 with an apparent first order rate constant governing sulfhydryl group disappearance of 4.2 × 10?2 min?1. This provides a t12 of 16.3 min for the sulfhydryl oxidase-catalyzed oxidation, whereas 165 min are required for nonenzymatic aerobic oxidation of one-half the sulfhydryl groups. Refolding of the reductively denatured polypeptide chains, monitored by changes in protein fluorescence, did not follow first order kinetics characteristic of a simple two-state mechanism, nor did the return of trypsin activatability. It appears that at least one intermediate must exist in such refolding, in both the uncatalyzed and sulfhydryl oxidase-catalyzed processes. Estimation of the rate constants governing refolding, assuming a single intermediate between the denatured and native states, provided values of 3 × 10?2 min?1 and 7 × 10?3 min?1 for uncatalyzed autoxidation and 4 × 10?2 min?1 and 1.1 × 10?2 min?1 for the sulfhydryl oxidase-catalyzed transition. Thus, enzymic catalysis of disulfide bond formation can lead to apparent catalysis of protein refolding as monitored both by fluorescence and by acquisition of biological function.  相似文献   

5.
The kinetics of the reduction by aniline and a series of substituted anilines of a peroxidatically active intermediate, formed by oxidation of deuteroferriheme with hydrogen peroxide, have been studied by stopped-flow spectrophotometry. The reaction with aniline was first order with respect to [intermediate] and showed first-order saturation kinetics with respect to [aniline]. The second-order rate constant was 2.0 ± 0.2 × 105 M?1 sec?1 at 25°C (independent of pH in the range 6.60–9.68) compared with the value of 2.4 × 105 M?1 sec?1 for the reaction of aniline with horseradish peroxidase Compound I. The effect of aniline substituents upon reactivity towards the heme intermediate closely paralled those reported for reaction with the enzymic intermediate. Anilines bearing electron-donating substituents reacted more rapidly and those bearing electron-withdrawing substituents more slowly than the unsubstituted amine. The rate constants for the heme intermediate reactions (kdfh)found to be related to those for the enzymic reactions (khrp) by the equation:log kDFH= 0.65log kHRP+ 1.96 with a correlation coefficient of 0. 98.  相似文献   

6.
Alkaline hydrolysis and subcritical water degradation were investigated as ex-situ remediation processes to treat explosive-contaminated soils from military training sites in South Korea. The addition of NaOH solution to the contaminated soils resulted in rapid degradation of the explosives. The degradation of explosives via alkaline hydrolysis was greatly enhanced at pH ≥12. Estimated pseudo-first-order rate constants for the alkaline hydrolysis of 2,4-dinitrotoluene (DNT), 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in contaminated soil at pH 13 were (9.6?±?0.1)×10?2, (2.2?±?0.1)×10?1, and (1.7?±?0.2)×10?2 min?1, respectively. In the case of subcritical water degradation, the three explosives were completely removed at 200–300°C due to oxidation at high temperatures and pressures. The degradation rate increased as temperature increased. The pseudo-first-order rate constants for DNT, TNT, and RDX at 300°C were (9.4?±?0.8)×10?2, (22.8?±?0.3)×10?2, and (16.4?±?1.0)×10?2, respectively. When the soil-to-water ratio was more than 1:5, the extent of alkaline hydrolysis and subcritical water degradation was significantly inhibited.  相似文献   

7.
The electron transfer reactions of horse heart cytochrome c with a series of amino acid-pentacyanoferrate(II) complexes have been studied by the stopped-flow technique, at 25°C, μ = 0.100, pH 7 (phosphate buffer). A second-order behavior was observed in the case of the Fe(CN)5 (histidine)3? complex, with k = 2.8 x 105 M?1 sec?1. For the Fe(CN)5 (alanine)4? and Fe(CN)5(L-glutamate)5? complexes, only a minor deviation of the second-order behavior, close to the experimental error (k = 3.2 × 105 and 1.6 x 105 M?1 sec?1, respectively) was noted at high concentrations of the reactants (e.g., 6 × 10?4 M). The results are in accord with recent work on the Fe(CN)64?/cytochrome c system demonstrating weak association of the reactants. The calculated self-exchange rate constants including electrostatic interactions for the imidazole,L -histidine, 4-aminopyridine, glycinate, β-alaninate, andL-glutamate pentacyanoferrate(II) complexes were 3.3 × 105, 3.3 × 105, 2.8 × 106,4.1 × 102,5.5 × 102, and 6.0 M?1 sec?1, respectively. Marcus theory calculations for the cytochrome c reactions were interpreted in terms of two nonequivalent binding sites for the complexes, with the metalloprotein self-exchange rate constants varying from 104 M?1 sec?1 (histidine, imidazole, and 4-aminopyridine complexes) to 106 M?1 sec ?1 (glycinate, β-alaninate, and L-glutamate complexes).  相似文献   

8.
The acid-catalyzed hydrolysis of heparin from Cu(II) complex was studied as a function of time and temperature. Four independent calculations showed that the hydrolysis, during the 5-hr period examined, obeys the first-order kinetic law. Specific rate constants, calculated at 50°C, 57°C, 65°C, 71°C, and 80°C, were 3.3 × 10?5 sec?1, 6.5 × 10?5 sec?1, 10.4 × 10?5 sec?1, 15.1 × 10?5 sec?1, and 26.6 × 10?5 sec?1, respectively. Arrhenius plots of the data yielded 14.7 kcal as the energy of activation. An independent run of the self-hydrolysis of heparin at 57°C also obeyed first-order kinetics and its specific rate constant of 6.4 × 10?5 sec?1 is in excellent agreement with that of the hydrolysis of Cu(II)-heparin at 57°C. The anticoagulant activity of heparin and of the Cu(II)-heparin are not appreciably different. Further, the inactivation of heparin closely parallels Cu(II) release from the Cu(II) complex which in turn parallels desulfation.  相似文献   

9.
10.
Two esteroproteolytic enzymes (A and D) have been isolated from the mouse submaxillary gland and shown to be pure by ultracentrifugation, immunoelectrophoresis, acrylamide-gel electrophoresis, and amino acid analyses. The enzymes have molecular weights of approximately 30,000 and are structurally and antigenically related. Narrow pH optima between 7.5 and 8.0 are exhibited by both enzymes. The “pK1's” are between 6.0 and 6.5 and the “pK2's” are near 9.0. A marked preference for arginine-containing esters is shown by both enzymes. The maximum specific activity of enzyme A on p-tosylarginine methyl ester (TAME) at pH 8 was 2500–3000 μm min?1 mg?1 and for enzyme D, 400–600 μm min?1 mg?1. With TAME as substrate, the Km for enzyme A was 8 × 10?4m at 25 °C and 6 × 10?4m at 37 °C. For D, Km was 3 × 10?4 at 25 °C and 2 × 10?4m at 37 °C.An apparent activation of enzyme D by tosylarginine (TA), a product of TAME hydrolysis, and all α-amino acids examined was due to removal of an inhibitor by chelation. This effect could be duplicated by 8-hydroxyquinoline and diethyldithiocarbamate but not by EDTA. Enzyme A was not affected by these substances to any remarkable extent. Several divalent ions proved to be potent inhibitors of enzyme D. Both enzymes are inactivated by the active site reagents diisopropyl phosphofluoridate and tosyllysine chloromethylketone but much less rapidly than is trypsin. Nitrophenyl-4-guanidionobenzoate reacts with a burst of nitrophenol liberation but with a rapid continuing hydrolysis. One active site per molecule is indicated. Enzyme D is inactivated by urea, reversibly at 10 m and with maximal permanent losses at 6 m. Autolysis of the unfolded form by the native enzyme when they coexist at intermediate urea concentrations appears to occur.Identity of enzyme D and the epithelial growth factor binding protein is demonstrated.  相似文献   

11.
The kinetics of formation of the intermediate complex between catalase and H2O2 has been reexamined. It has been shown that the kinetics consists of a rapid and of a subsequent slow phase. At the maximum of the transient decrement of the optical absorption, the system was found to be in a terminal state with regard to the rapid phase. On this basis, the formation curve of the intermediate complex was calculated. From the parameters of the curve the maximal saturation of catalase hematins (from horse erythrocytes) by H2O2 is 35%. The absolute spectrum of the intermediate complex was established. The variation of the previously calculated rate constant of formation of the intermediate complex was shown to be due to the inapplicability of the pre-steady-state approximation to the rate data. By applying a more general approach and by the use of a computer, the individual rate constants of the peroxidatic scheme were calculated (relevant to micromolar solutions of catalase) k1 = (3.0 ± 0.2) × 106 M?1 sec?1k4 = (5.6 ± 0.3) × 106 M?1 sec?1 These values are 2.2 times higher in a nanomolar solution.  相似文献   

12.
The reactions of copper(II)-ahphatic polyamine complexes with cysteine, cysteine methyl ester, penicillamine. and glutathione have been investigated, with the goal of understanding the relationship between RS?-Cu(II) adduct structure and preferred redox decay pathway. Considerable mechanistic flexibility exists within this class of mercapto ammo acid oxidations, as changes in the rate law could be induced by modest variations in reductant concentration (at fixed [Cu(II)]o), pH, and the structure of the redox partners. With excess cysteine present at 25°C, pH 5 0, I = 0 2 M (NaOAc), decay of 1:1 cys-S?-Cu(II) transient adducts was found to be first order in both cys-SH and transient. Second-order rate constants characteristic of Cu(dien)2+ (6 1 × 103M?1sec?1), Cu(Me5dien)2+ (2.7 × 103M?1 sec?1), Cu(en)22+ (2.1 × 103M?1 sec?1), and Cu(dien)22+ (4.7 × 103 M?1 sec ?1) are remarkably similar, considering substantial differences in the composition and geometry of the oxidant first coordination sphere. A mechanism involving attack of cysteine on the coordinated sulfur atom of the transient, giving a disulfide anion radical intermediate, is proposed to account for these results Moderate reactivity decreases in the cysteine-Cu(dien)2+, Cu(Me5dien)2+ reactions with increasing [H+] (pH 4–6) reflect partial protonation of the polyamine ligands. A very different rate law, second order in the RS?-Cu(II) transient and approximately zeroth order in mercaptan, applies in the pH 5.0 oxidations of cysteine methyl ester, penicillamine, and glutathione by Cu(dien)2+ and Cu(Me5dien)2+. This behavior suggests the mtermediacy of di-μ-mercapto-bridged binuclear Cu(II) species, in which a concerted two-electron change yields the disulfide and Cu(I) products. Similar hydroxo-bridged intermediates are proposed to account for the transition from first- to second-order transient dependence in cysteine oxidations by Cu(dien)2+ and Cu(Me5dien)2+ as the pH is increased from 5 to 7. Yet another rate law, second order in transient and first order in cysteine, applies in the pH 5.0 oxidation of cysteine by Cu(Me6tren)2+ (k(25°C) 7.5 × 107 M?2 sec?1, I = 0.2 M). Steric rigidity of this trigonal bipyramidal oxidant evidently protects the coordinated sulfur atom from attack in a RSSR?-forming pathway. Formation of a coordinated disulfide in the rate-determining step is purposed, coupled with attack of a noncoordinated cysteine molecule on a vacated coordination position to stabilize the (Me6(tren)Cu(I) product.  相似文献   

13.
Using a liquid chromatography method that separates the two sulfonium diastereoisomers of adenosylmethionine, we have found that immature soybeans, soybean callus culture, radish leaves, yeast and rat liver contain only the (S)-sulfonium form of S-adenosylmethionine. Our findings contradict the suggestion by Stolowitz and Minch that 10–20% of naturally-occurring adenosylmethionine may have the (R)-configuration at the sulfonium pole. Absence of the (R)-sulfonium isomer of adenosylmethionine in biological materials indicates that the (R)-sulfonium form of adenosylmethionine present in commercial adenosylmethionine samples is an artifact of the isolation procedure. Our method of measuring the isomers of adenosylmethionine enabled us to readily determine the rate of racemization and hydrolysis of adenosylmethionine. Our rate constants for racemization (Kr) and hydrolysis (Kh) were 2.4 × 10?6 sec?1 and 12.3 × 10-?6 sec?1, respectively; values which are noticeably different from those of Wu and co-workers which were obtained with a more complicated method (Kr = 8 × 10?1 sec?1; Kh = 6 × 10?6 sec?1). We believe the absence of the (R)-isomer in vivo is best explained by stabilization of the (S)-isomer as suggested by Wu et al. Although the tissues we have analysed contained the (S)-sulfonium form of adenosylmethionine exclusively, when ethionine-resistant soybean cell lines were given ethionine, they accumulated both sulfonium diastereoisomers of adenosylethionine.  相似文献   

14.
Some properties of a preparation of an enzyme, lunularic acid decarboxylase, from the liverwort Conocephalum conicum are described. The enzyme is normally bound and could be solubilized with Triton X-100; at least some of the bound decarboxylase activity appears to be associated with chloroplasts. For lunularic acid the enzyme has Km 8.7 × 10?5 M (pH 7.8 and 30°). Some substrate analogues have been tested but no other substrate was found. Pinosylvic acid is a competitive inhibitor for the enzyme, Ki 1.2 × 10?4 M (pH 7.8 and 30°). No product inhibition was observed. Lunularic acid decarboxylase activity has also been observed with a cell-free system from Lunularia cruciata.  相似文献   

15.
Hydrolysis of Lys-Arg-Pro-Gly-Phe-Ser-Pro-Phe-Arg-Ser-Val-Gln-Val-Ser by trypsin (EC 3.4.21.4) yields lysyl-bradykinin by rupture of the Arg-Ser bond. The kcat/Km value found for this hydrolysis was 1.4 × 1010 M?1 × sec?1, which is 10?5-fold higher than that obtained for the hydrolysis of bradykinyl-Ser-Val-Gln-Val-Ser. This effect was abolished by acetylation of the lysine amino groups of the pentadecapeptide. Contrarywise, the esterolytic activity of trypsin on bradykinin methyl ester was the same as in lysyl-bradykinin methyl ester. The high susceptibility of Lys-bradykinyl-Ser-Val-Gln-Val-Ser to trypsin catalysis is striking because: a) it constitutes the first example that an amino acid residue distant from the bond split may enhance trypsin catalysis; b) this pentadecapeptide is the best synthetic substrate so far described for trypsin and c) the value of kcat/Km for its hydrolysis is unusually high for proteases.  相似文献   

16.
The inactivation of E. coli RNA polymerase (3.3 × 10?7M) by pyridoxal 5′-phosphate (1 × 10?4M to 5 × 10?4M) is a first order process with respect to the remaining active enzyme. Studies of the variation of the first order rate constant with the concentration of pyridoxal 5′-phosphate show that the inactivation reaction follows saturation kinetics. The formation of a reversible enzyme-inhibitor intermediate is postulated. Kinetic studies at different pH values indicate that the inactivation rate constant depends on the mole fraction of one conjugate base with pKa 7.9. The apparent equilibrium constant (association) for the inactivation reaction is independent of the pH and is 1.8 × 104 M?1. By electrophoretic and chromatographic analysis of enzyme hydrolyzates after pyridoxal 5′-phosphate and NaBH4 treatment only N-ε-pyridoxyllysine was found. It is postulated that a lysine ε-amino group with a low pKa is critical for the activity of the enzyme.  相似文献   

17.
The binding of cis(c)- and trans(t)-Pt(NH3)2Cl2 to DNA at platinum/DNA-nucleotide ratios (Ri) of 0.1 or less has been studied by means of radioactive 195mPt-labeled compounds. Kinetic data are consistent with the following scheme:
At 25°C and pH 5–6 in 5 mM NaClO4, the values for the rate constants in the above scheme for the c-isomer are k2 = 2.2 × 10?5 sec?1, k7 = 0.32 (sec M)?1, and k8 = 143 (sec M)?1; for the t-isomer the values are k2 < 0.5 × 10?5 sec?1 and k7 = 0.95 (sec M)?1. Platinum-DNA adducts do not undergo detectable exchange after 3 days at 37°C, indicating the absence of a dynamic equillibrium. For both isomers the rate of binding is the same for single- and double-stranded DNA. The conclusions derived from Ag+ and H+ titration studies are consistent with binding at guanine N(7) for Ri < 0.1. The reaction rate is competitively inhibited by various salts and buffers and is suppressed by raising the pH (50% inhibition of initial rates at pH 7.3). At 37°C and pH 7 in 0.15 M NaCl, 6–8% of both the c- and t-isomers bind to DNA in 24 h, suggesting that both compounds should bind to DNA under biological conditions.  相似文献   

18.
Biofuels derived from non-crop sources, such as microalgae, offer their own advantages and limitations. Despite high growth rates and lipid accumulation, microalgae cultivation still requires more energy than it produces. Furthermore, invading organisms can lower efficiency of algae production. Simple environmental changes might be able to increase algae productivity while minimizing undesired organisms like competitive algae or predatory algae grazers. Microalgae are susceptible to pH changes. In many production systems, pH is kept below 8 by CO2 addition. Here, we uncouple the effects of pH and CO2 input, by using chemical pH buffers and investigate how pH influences Nannochloropsis salina growth and lipid accumulation as well as invading organisms. We used a wide range of pH levels (5, 6, 7, 8, 9, and 10). N. salina showed highest growth rates at pH 8 and 9 (0.19?±?0.008 and 0.19?±?0.011, respectively; mean ± SD). Maximum cell densities in these treatments were reached around 21 days into the experiment (95.6?×?106?±?9?×?106 cells mL?1 for pH 8 and 92.8?×?106?±?24?×?106 cells mL?1 for pH 9). Lipid accumulation of unbuffered controls were 21.8?±?5.8 % fatty acid methyl esters content by mass, and we were unable to trigger additional significant lipid accumulation by manipulating pH levels at the beginning of stationary phase. Ciliates (grazing predators) occurred in significant higher densities at pH 6 (56.9?±?39.6?×?104 organisms mL?1) than higher pH treatments (0.1–6.8?×?104 organisms mL?1). Furthermore, the addition of buffers themselves seemed to negatively impact diatoms (algal competitors). They were more abundant in an unbuffered control (12.7?±?5.1?×?104 organisms mL?1) than any of the pH treatments (3.6–4.7?×?104 organisms mL?1). In general, pH values of 8 to 9 might be most conducive to increasing algae production and minimizing invading organisms. CO2 addition seems more valuable to algae as an inorganic carbon source and not as an essential mechanism to reduce pH.  相似文献   

19.
《Bioorganic chemistry》1986,14(4):392-404
Δ2-Thiazoline-2-carboxylate, the product of the suspected physiological reaction catalyzed by d-amino acid oxidase, is stable to hydrolysis at 37°C and pH 7 or above, but it hydrolyzes readily at pH 5 or below to give a mixture of N- and S-oxalylcysteamines; the N-oxalyl derivative predominates at pH's above 1 while the S-oxyalyl compound is the major product at high acidities. The pH-rate profile looks like the superposition of two bell-shaped curves. The initial increase in the rate as the pH is lowered is controlled by a pKa of 3.95 and from pH 1 to 3 the rate is relatively constant (k = 6.7 × 10−4s−1 at 37°C and ionic strength 0.5 m). Below pH 1 the rate increases again to a maximum in 1 m HCl and then decreases in more highly acidic solutions. The rate of conversion of S-oxalylcysteamine to N-oxalylcysteamine is inversely proportional to the hydrogen ion concentration from pH 3 to 5 but becomes largely independent of pH from pH 1 to 2. In the pH-independent region the rate is comparable with that observed by others for S-acetylcysteamine but in the pH-dependent region the rate is 20 to 25 times faster for the oxalyl derivative than for the acetyl compound. At pH 1, N-oxalylcysteamine is partially converted to the S-oxalyl derivative but the rate of hydrolysis (k = 1.0 × 10−5s−1 at 37°C) to cysteamine and oxalate of this partially equilibrated system occurs at a comparable rate. The results of this investigation are rationalized in terms of what is known about other thiazoline hydrolyses and intramolecular S to N acyl migrations. The main differences in the present case are presumably due to the fact that thiazoline-2-carboxylate can undergo hydrolysis by two reaction manifolds, one with the carboxyl unprotonated and the other with it protonated. The relevance of these results to possible reactions of thiazoline-2-carboxylate in vivo is briefly considered.  相似文献   

20.
The rate of phosphate hydrolysis of ATP in the substitution-inert complex Co(NH3)4ATP-has been examined in the presence and absence of [Co(cyclen)(H2O)2]3+. The rate of hydrolysis of Co(NH3)4ATP- in the absence of [Co(cyclen)(H2O)2]3+ is essentially independent of pH in the range 6.0 to 9.0, and the rate constant is 2.6 × 10?5 sec ?1 at pH 9.0, 40°C, and 1.0 M ionic strength Rate constants for the hydrolysis of Co(NH3)4ATP- in the presence of [Co(cyclen)(H2O)2]3+ are sharply dependent upon pH in the same range. The rate constants at pH 8.0, 8.6, and 9.0 are 8, 63, and 95 times larger than the rate constant at pH 7.0. At pH 9 the rate constant is 1.2 × 10?3 sec?1 for 16 mM Co(NH3)4ATP- in the presence of 10 mM [Co(cyclen)(H2O)2]3+. The proposed mechanism for hydrolysis involves the coordination of a phosphate group of Co(NH3)4ATP- by [Co(cyclen)(H2O)2]3+ to form a dinuclear species, followed by internal attack of coordinated hydroxide on the phosphate chain.  相似文献   

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