中国高等植物数字化标本分析

传统上馆藏标本,主要用于植物分类学、植物资源学的研究。数字标本的出现将标本的使用拓展到从研究生物多样性时间空间分布到生态学和进化学理论、生物多样性保护、农业和人类健康等广泛领域。截至目前,从互联网上获取的采自中国的植物标本数量已有1 200多万份。该文通过整理和分析这些数据以了解中国植物标本的数字化精度、采集时间和采集地区规律以及采集空缺等状况。结果表明:中国标本采集形成了4个高峰,即20世纪30年代、60年代、80年代和21世纪初,中国植物标本采集和研究工作主要在20世纪50年代后由中国学者完成。标本采集地区覆盖度在省级较好,县级标本采集则很不平衡; 标本采集类群在科属层面覆盖率高,但近五分之一的物种采集不足; 标本的采集量既与植物分布幅度相关,也与采集地区的知名度、所获科研项目及采集者偏好有关。未来中国植物标本数字化方向应该在继续挖掘馆藏标本的同时,一方面开展对现有数字化标本信息再审核及补充,并加强与欧美大馆的信息共享以获取早期历史标本信息; 另一方面应用数字化标本信息分析结果,指导境内标本的精准采集,包括采集薄弱/空白地区、采集薄弱/空白属种的采集,以进一步增强实体标本馆能力,提高数字化标本质量,为进一步完善植物标本数字化和精准化采集提供依据,更好地服务科学和社会的发展。     

Changes in plant collection practices from the 16th to 21st centuries: implications for the use of herbarium specimens in global change research

Background and AimsHerbaria were recently advertised as reliable sources of information regarding historical changes in plant traits and biotic interactions. To justify the use of herbaria in global change research, we asked whether the characteristics of herbarium specimens have changed during the past centuries and whether these changes were due to shifts in plant collection practices.MethodsWe measured nine characteristics from 515 herbarium specimens of common European trees and large shrubs collected from 1558 to 2016. We asked botanists to rank these specimens by their scientific quality, and asked artists to rank these specimens by their beauty.Key ResultsEight of 11 assessed characteristics of herbarium specimens changed significantly during the study period. The average number of leaves in plant specimens increased 3-fold, whereas the quality of specimen preparation decreased. Leaf size negatively correlated with leaf number in specimens in both among-species and within-species analyses. The proportion of herbarium sheets containing plant reproductive structures peaked in the 1850s. The scientific value of herbarium specimens increased until the 1700s, but then did not change, whereas their aesthetic value showed no systematic trends.ConclusionsOur findings strongly support the hypothesis that many characteristics of herbarium specimens have changed systematically and substantially from the 16th to 21st centuries due to changes in plant collection and preservation practices. These changes may both create patterns which could be erroneously attributed to environmental changes and obscure historical trends in plant traits. The utmost care ought to be taken to guard against the possibility of misinterpretation of data obtained from herbarium specimens. We recommend that directional changes in characters of herbarium specimens which occurred during the past 150‒200 years, primarily in specimen size and in the presence of reproductive structures, are accounted for when searching for the effects of past environmental changes on plant traits.     

Notes from the New York Botanical Garden Herbarium II. The Herbaria of Charles Warfield Trow and Albert T. Beals

Two private herbaria have been donated to the Garden. The Trow herbarium consists of 87 mounted plants collected in Massachusetts between 1895 and 1900. The Beals herbarium contains 325 mounted plants from New Jersey and Pennsylvania, collected between 1898 and 1901.     

Comparing fruiting phenology across two historical datasets: Thoreau’s observations and herbarium specimens

Background and AimsFruiting remains under-represented in long-term phenology records, relative to leaf and flower phenology. Herbarium specimens and historical field notes can fill this gap, but selecting and synthesizing these records for modern-day comparison requires an understanding of whether different historical data sources contain similar information, and whether similar, but not equivalent, fruiting metrics are comparable with one another.MethodsFor 67 fleshy-fruited plant species, we compared observations of fruiting phenology made by Henry David Thoreau in Concord, Massachusetts (1850s), with phenology data gathered from herbarium specimens collected across New England (mid-1800s to 2000s). To identify whether fruiting times and the order of fruiting among species are similar between datasets, we compared dates of first, peak and last observed fruiting (recorded by Thoreau), and earliest, mean and latest specimen (collected from herbarium records), as well as fruiting durations.Key ResultsOn average, earliest herbarium specimen dates were earlier than first fruiting dates observed by Thoreau; mean specimen dates were similar to Thoreau’s peak fruiting dates; latest specimen dates were later than Thoreau’s last fruiting dates; and durations of fruiting captured by herbarium specimens were longer than durations of fruiting observed by Thoreau. All metrics of fruiting phenology except duration were significantly, positively correlated within (r: 0.69–0.88) and between (r: 0.59–0.85) datasets.ConclusionsStrong correlations in fruiting phenology between Thoreau’s observations and data from herbaria suggest that field and herbarium methods capture similar broad-scale phenological information, including relative fruiting times among plant species in New England. Differences in the timing of first, last and duration of fruiting suggest that historical datasets collected with different methods, scales and metrics may not be comparable when exact timing is important. Researchers should strongly consider matching methodology when selecting historical records of fruiting phenology for present-day comparisons.     

A new herbarium-based method for reconstructing the phenology of plant species across large areas

Phenological data have recently emerged as particularly effective tools for studying the impact of climate change on plants, but long phenological records are rare. The lack of phenological observations can nevertheless be filled by herbarium specimens as long as some correction procedures are applied to take into account the different climatic conditions associated with sampling locations. In this study, we propose a new herbarium-based method for reconstructing the flowering dates of plant species that have been collected across large areas. Coltsfoot (Tussilago farfara L.) specimens from southern Quebec were used to test the method. Flowering dates for coltsfoot herbarium specimens were adjusted according to the date of disappearance of snow cover in the region where they were collected and compared using a reference point (the date of earliest snowmelt). In southern Quebec, coltsfoot blooms earlier at present (15-31 d) than during the first part of the 20th century. This phenomenon is likely associated with the climate warming trends recorded in this region in the last century, especially during the last three decades when the month of April became warmer, thereby favoring very early-flowering cases. The earlier flowering of coltsfoot is, however, only noticeable in large urban areas (Montreal, Quebec City), suggesting a strong urban heat island effect on the flowering of this plant. Herbarium specimens are useful phenological indicators; however, the databases should be carefully examined prior to analysis to detect biases or trends associated with sampling locations.     

Patterns of plant naturalization show that facultative mycorrhizal plants are more likely to succeed outside their native Eurasian ranges

The naturalization of an introduced species is a key stage during the invasion process. Therefore, identifying the traits that favor the naturalization of non-native species can help understand why some species are more successful when introduced to new regions. The ability and the requirement of a plant species to form a mutualism with mycorrhizal fungi, together with the types of associations formed may play a central role in the naturalization success of different plant species. To test the relationship between plant naturalization success and their mycorrhizal associations we analysed a database composed of mycorrhizal status and type for 1981 species, covering 155 families and 822 genera of plants from Europe and Asia, and matched it with the most comprehensive database of naturalized alien species across the world (GloNAF). In mainland regions, we found that the number of naturalized regions was highest for facultative mycorrhizal, followed by obligate mycorrhizal and lowest for non-mycorrhizal plants, suggesting that the ability of forming mycorrhizas is an advantage for introduced plants. We considered the following mycorrhizal types: arbuscular, ectomycorrhizal, ericoid and orchid mycorrhizal plants. Further, dual mycorrhizal species were those that included observations of arbuscular mycorrhizas as well as observations of ectomycorrhizas. Naturalization success (based on the number of naturalized regions) was highest for arbuscular mycorrhizal and dual mycorrhizal plants, which may be related to the low host specificity of arbuscular mycorrhizal fungi and the consequent high availability of arbuscular mycorrhizal fungal partners. However, these patterns of naturalization success were erased in islands, suggesting that the ability to form mycorrhizas may not be an advantage for establishing self-sustaining populations in isolated regions. Taken together our results show that mycorrhizal status and type play a central role in the naturalization process of introduced plants in many regions, but that their effect is modulated by other factors.     

福建省种子植物分布新记录

报道4种福建省种子植物分布新记录：球药隔重楼Paris fargesii Franch.、巫山繁缕Stellaria wushanensis Williams、肾萼金腰Chrysosplenium delavayi Franch.和叉序草Isoglossa collina (T. Anders.) B. Hansen。新分布植物标本均保存于福建农林大学植物标本馆(FAFU)。     

A deep learning-based approach for detecting plant organs from digitized herbarium specimen images

Herbarium specimens are excellent sources of botanical information to facilitate understanding and monitoring the evolution of plants and their effects on global climate change. Globally, many herbaria have undertaken digitization projects of herbarium specimens to preserve them and make them accessible in online repositories to botanists and ecologists. Automated detection of plant organs such as plant leaves, buds, flowers, and fruits on the digitized herbarium specimen images provides valuable information in various scientific contexts. We developed a deep learning approach based on the refined YOLO-V3 approach to detect plant organs within the digitized herbarium specimen images effectively. The proposed approach combines ResNet and DenseNet architectures to improve feature extraction capabilities. Also, a new scale of feature map is added to the existing scales to address the problem of YOLO-V3's low performance in detecting small plant organs. The experimental results demonstrate that our proposed approach can detect organs of different sizes within different specimens, where the precision and recall reached 94.2% and 95.5%, respectively.     

中国大陆水生植物新逸生种——红菊花草

报道了中国大陆水盾草科(莼菜科)水盾草属的新归化水生植物——红菊花草Cabomba furcata Schult. & Schult. f.,凭证标本存于中国科学院华南植物园标本馆(IBSC)。     

Sources of information about botanic gardens and herbaria

Botany is the study of living plants in the garden and the wild and of dead plants in the herbarium and laboratory. The value of a botanic garden for teaching purposes became evident in the 16th century with the founding between 1543 and 1600 of botanic gardens at Pisa, Padua, Florence, Bologna, Leyden, Leipzig, Paris, Montpellier and Heidelberg: indeed most of the major European botanic gardens were founded during this and the next two centuries. Associated with the study of living plants in botanic gardens was the invention of the herbarium by Luca Ghini (1490–1556) and the subsequent making of many private herbaria, out of which have developed the large institutional herbaria, mostly in the 18th and 19th centuries. The continuous enrichment of European gardens by the introduction of new plants resulting from European exploration and colonization created many problems of classification and naming, and so led to the development of taxonomic methods and the adoption of consistent binomial nomenclature for species, following Linnaeus, during the 18th century. The fashion for collecting in the 17th and 18th centuries resulted in the amassing of big private collections which later became the basis of institutional collections. The increase of such public collections by making available material for study from all over the world has, in turn, increased the publications relating to this. Thus the botanic garden and the herbarium, with their associated libraries, have become complementary repositories of botanical information invaluable to the taxonomist, the plant geographer, the economic botanist and the student of evolution. Some useful publications relating to botanic gardens, herbaria and botanical and horticultural collectors are listed.     

Spread of exotic plants in the landscape: the role of time,growth habit,and history of invasiveness

We investigated the relative contribution of minimum residence time, growth habit, and history of invasiveness to the spread of exotic plants in Michigan and California. Our data include minimum residence time as estimated by earliest herbarium collection records, growth habit, and history of invasiveness for over 2000 records from two herbaria (MI = 943, CA = 1131). Our data support the hypothesis that minimum residence time is highly associated with landscape spread, explaining 39–44% of variation in the number of counties invaded. In contrast, growth habit and history of invasiveness explained a small fraction of variation in spread in California but not Michigan. Over the past 30 years exotic plant species frequently became established in Michigan and California (≥50 species per decade), suggesting that many more species will become invasive over time. There is an urgent need to develop effective policies for exotic plant management. In both states we found significant positive correlations between minimum residence time and species occurrence on state invasive plant lists. Further, we found historical information on the pest status of a plant species introduced into a similar environment to be relevant in determining landscape spread of exotic plants. We conclude that efforts to predict exotic species spread based on biological characteristics may have limited success, and instead endorse pest risk analysis for proposed new imports coupled with rapid detection and early response for unintended and unwanted introductions.     

Comparison of Herbarium Label Data and Published Medicinal Use: Herbaria as an Underutilized Source of Ethnobotanical Information

The use of herbarium specimens as vouchers to support ethnobotanical surveys is well established. However, herbaria may be underutilized resources for ethnobotanical research that depends on the analysis of large datasets compiled across multiple sites. Here, we compare two medicinal use datasets, one sourced from published papers and the other from online herbaria to determine whether herbarium and published data are comparable and to what extent herbarium specimens add new data and fill gaps in our knowledge of geographical extent of plant use. Using Brazilian legumes as a case study, we compiled 1400 use reports from 105 publications and 15 Brazilian herbaria. Of the 319 species in 107 genera with cited medicinal uses, 165 (51%) were recorded only in the literature and 55 (17%) only on herbarium labels. Mode of application, plant part used, or therapeutic use was less often documented by herbarium specimen labels (17% with information) than publications (70%). However, medicinal use of 21 of the 128 species known from only one report in the literature was substantiated from independently collected herbarium specimens, and 58 new therapeutic applications, 25 new plant parts, and 16 new modes of application were added for species known from the literature. Thus, when literature reports are few or information-poor, herbarium data can both validate and augment these reports. Herbarium data can also provide insights into the history and geographical extent of use that are not captured in publications.     

Traits explain invasion of alien plants into tropical rainforests

• 1. The establishment of new botanic gardens in tropical regions highlights a need for weed risk assessment tools suitable for tropical ecosystems. The relevance of plant traits for invasion into tropical rainforests has not been well studied.
• 2. Working in and around four botanic gardens in Indonesia where 590 alien species have been planted, we estimated the effect of four plant traits, plus time since species introduction, on: (a) the naturalization probability and (b) abundance (density) of naturalized species in adjacent native tropical rainforests; and (c) the distance that naturalized alien plants have spread from the botanic gardens.
• 3. We found that specific leaf area (SLA) strongly differentiated 23 naturalized from 78 non‐naturalized alien species (randomly selected from 577 non‐naturalized species) in our study. These trends may indicate that aliens with high SLA, which had a higher probability of naturalization, benefit from at least two factors when establishing in tropical forests: high growth rates and occupation of forest gaps. Naturalized aliens had high SLA and tended to be short. However, plant height was not significantly related to species'' naturalization probability when considered alongside other traits.
• 4. Alien species that were present in the gardens for over 30 years and those with small seeds also had higher probabilities of becoming naturalized, indicating that garden plants can invade the understorey of closed canopy tropical rainforests, especially when invading species are shade tolerant and have sufficient time to establish.
• 5. On average, alien species that were not animal dispersed spread 78 m further into the forests and were more likely to naturalize than animal‐dispersed species. We did not detect relationships between the measured traits and estimated density of naturalized aliens in the adjacent forests.
• 6. Synthesis: Traits were able to differentiate alien species from botanic gardens that naturalized in native forest from those that did not; this is promising for developing trait‐based risk assessment in the tropics. To limit the risk of invasion and spread into adjacent native forests, we suggest tropical botanic gardens avoid planting alien species with fast carbon capture strategies and those that are shade tolerant.

     

中国西部地区归化植物时空分布特征研究

归化是外来植物越过一系列障碍成为入侵植物的基本前提,对归化植物的种类组成及分布规律进行研究,有助于预防和管控植物入侵.该文基于文献报道和标本记录,对中国西部地区共12省(区)126个地级市的归化植物进行统计(包含所有维管束植物),并分析了这些植物的组成和时空分布特征.结果表明:(1)西部地区共有归化植物826种,分属1...     

植物模式标本数据整合新的机遇与挑战

命名模式是分类群名称永久依附的成分,在分类学研究中有不可替代的价值。中国复杂的植物采集历史以及对中国植物标本开展研究的单位各异,导致我国植物模式标本零散分布于全球各大标本馆,给分类工作的开展带来了极大的困难。标本数字化的开展为模式标本数据整合提供了新的机遇,同时也给我们带来了人名和地名标准化以及模式类型确认等方面的挑战。我国于2006年开始对模式标本数据进行收集和整理,迄今已完成国内外20余家标本馆9万余条标本数据的收集。模式考证和模式类型清理是我们下一步亟须开展的工作,同时我们应将地名变更资料、人名考证资料进行整合并建立相应的数据库以推动模式标本数据的标准化。这将在很大程度上有助于我们摸清中国模式标本的家底。     

Precipitation contributes to plant height,but not reproductive effort,for western prairie fringed orchid (Platanthera praeclara Sheviak & Bowles): Evidence from herbarium records

The western fringed prairie orchid (WFPO) is a rare plant found in mesic to wet tallgrass prairies in the Great Plains and Midwest regions of the United States. The size of WFPO populations varies considerably from year to year, and studies have suggested that population size is dependent on precipitation during critical periods in the plant's annual development. We hypothesized that plant height and reproductive effort would also be controlled by precipitation, either during these periods or over a broader period. We acquired available images of WFPO from 21 herbaria, and of these 141 individual plants had information adequate for analysis, although some population/year combinations were represented multiple times. For each specimen, we measured plant height (cm) and reproductive effort (as measured by total flower and bud count). We used bootstrapped linear regression, randomly selecting one individual from each population/year combination, to compare precipitation models, both during critical periods and the various summaries. We found that precipitation during the phenologically critical periods was a poor predictor of plant height and reproductive effort. Of the broader precipitation variables, accumulated precipitation from January 1 to collection date best described plant height. We also used correlations to detect a relationship among the variables WFPO height, reproductive effort, precipitation, latitude, and year of collection. Year of specimen collection was negatively correlated with WFPO plant height and accumulated precipitation, suggesting that both have declined in more recent years. Negative correlations with latitude also suggest height and precipitation decrease in the northern part of WFPO's range. Reproductive effort was not related to tested precipitation variables; however, it was weakly correlated with plant height. Although the results are limited, this study leverages available data and makes inferences on WFPO biology over broad ranges of time (1894–2012) and latitude (37.5°–49.9°).     

Naturalization of ornamental plant species in public green spaces and private gardens

Ornamental horticulture is the most important pathway for alien plant introductions worldwide, and consequently, invasive spread of introduced plants often begins in urban areas. Although most introduced ornamental garden-plant species are locally not naturalized yet, many of them have shown invasion potential elsewhere in the world, and might naturalize when climate changes. We inventoried the planted flora of 50 public and 61 private gardens in Radolfzell, a small city in southern Germany, to investigate whether local naturalization success of garden plants is associated with their current planting frequency, climatic suitability (as assessed with climatic niche modelling) and known naturalization status somewhere in the world. We identified 954 introduced garden-plant species, of which 48 are already naturalized in Radolfzell and 120 in other parts of Germany. All currently naturalized garden plants in Radolfzell have a climatic suitability probability of ≥ 0.75 and are naturalized in ≥ 13 out of 843 regions globally. These values are significantly higher than those of garden plants that have not become locally naturalized yet. Current planting frequencies, however, were not related to current naturalization success. Using the identified local naturalization thresholds of climatic suitability and global naturalization frequency, and climate projections for the years 2050 and 2070, we identified 45 garden-plant species that are currently not naturalized in Radolfzell but are likely to become so in the future. Although our approach cannot replace a full risk assessment, it is well-suited and applicable as one element of a screening or horizon scanning-type approach.     

高校新型植物标本馆的建立与发展——以河南农业大学植物标本馆为例

高校标本馆作为重要的科普和教学实践基地,是连接大学与社会的桥梁,在提升高校社会影响力和加快高校发展中起着重要作用。目前,高校标本馆普遍存在经费少和缺乏管理等问题。如何立足高校现状,有效解决标本采集和标本数字化过程中耗时耗力的难题,建设具有地方特色的新型植物标本馆,是高校标本馆建设关注的焦点之一。该文以河南农业大学植物标本馆新馆建设为例,介绍了河南农业大学标本馆成立以来,充分发挥高校的人力资源优势,让学生通过实验课或野外实习积极参与新型植物标本馆的建设,基本实现了标本采集、制作、鉴定和数字化的同步进行。在这一过程中,既有效锻炼了学生能力,加深了学生对植物形态的认识,发挥了植物标本馆在教学、科学研究及科学普及中的积极作用,又极大地丰富了标本馆馆藏量,有效地促进了高校新型植物标本馆的发展。     

Influence of different landscape design styles on plant invasions in Central Europe

When considering the most frequent invasive exotic plants on an international scale, it is evident that the majority are ornamentals and that they were deliberately introduced in relation to landscape design. Although there are worldwide numerous lists of invasive exotic plants—which means plants that have harmful effects on native biodiversity—an assessment of the contribution of different landscape design styles on plant invasions has not been done. We used the extensive database on the history of introduction and naturalization of alien plants into natural habitats of Central Europe (Lohmeyer and Sukopp, Agriophyten in der Vegetation Mitteleuropas in: Schriftenreihe Vegetationskunde 25, 1992; Nachtrag: Braunschweiger Geobotan Arbeiten 8:179–220, 2001) to examine how many alien ornamental plants there are in the different natural habitats; and how many of them are invasive exotic plants and—in contrast—how many have not spread significantly. Also, we researched contributions by different landscape design styles to these plant invasions since medieval times. Of the estimated 12,000 alien plant species introduced into Central Europe since the Neolithic period, 279 taxa (2.3 %) are currently identified as being naturalized in natural habitats; 103 (0.86 %) of these naturalized taxa are ornamentals, and of these, 40 (0.33 %) are invasive exotic plants. Our investigation has shown a correlation between the frequency of plant invasions and changes in landscape-design styles. Evaluating the impact of plant invasions through horticulture and landscape design on native biodiversity, our study illustrates that it is significantly lower in Central Europe than in other parts of the world.