Cloning and Characterization of a 22 kDa Outer-Membrane Protein (Omp22) from Helicobacter pylori

Helicobacter pylori is a causative agent of gastritis and peptic ulceration in humans. As the first step towards development of a vaccine against H. pylori infection, we have attempted to identify protective antigens. A potential target of vaccine development would be a H. pylori specific protein, which is surface-exposed and highly antigenic. We identified a 22 kDa outer-membrane protein (Omp22) from H. pylori, which was highly immunoreactive. By screening a H. pylori genomic DNA library with rabbit anti-H. pylori outer-membrane protein antibodies, the omp22 gene was cloned and 1.4 kb of the nucleotide sequence was determined. One open reading frame, encoding a 179-residue polypeptide, was identified and the amino acid sequence deduced showed homology with peptidoglycan-associated lipoproteins. The sequence was conserved among other H. pylori strains. Omp22 protein is expressed as a precursor polypeptide of 179 residues and undergoes lipid modification and cleavage of an 18 amino acid signal peptide to yield a mature protein. Omp22 protein in H. pylori as well as recombinant Omp22 protein expressed in E. coli was localized into the outer membrane and exposed on the cell surface. Omp22 may have the potential as a target antigen for the development of a H. pylori vaccine.     

Chromosomal Mapping ofTmp(Emp1),Xmp(Emp2), andYmp(Emp3), Genes Encoding Membrane Proteins Related toPmp22

We have recently characterized a novel mammalian gene family, encoding membrane glycoproteins with four trans-membrane domains. This gene family includes the previously studiedPMP22,which is involved in the Charcot–Marie–Tooth neuropathy, and three novel genes:TMP, XMP,andYMP(HGMW-approved symbolsEMP1, EMP2andEMP3,respectively). TheTmp(tumor-associated membrane protein) gene was isolated from a c-mycinduced mouse brain tumor and is expressed in several highly proliferative cell types. We have now isolated cDNAs of the mouseXmpandYmpgenes and determined the chromosomal localization of mouseTmp, Xmp,andYmp. Tmpwas mapped to mouse chromosome 6,Xmpwas mapped to chromosome 16, andYmpwas mapped to chromosome 7.TmpandYmpmap to paralogous chromosomal regions, whereasXmpmaps to a chromosomal region that is putatively paralogous to a region on chromosome 11, to whichPmp22was previously mapped. These data suggest that this family of membrane glycoproteins evolved as a result of chromosomal duplications.     

Polyscias (Araliaceae) not Brucea (Simaroubaceae) is native to the Arabian Peninsula

It is shown that the single record of the genus Brucea J. F. Mill. (Simaroubaceae) from Yemen in the Arabian Peninsula (Wood 2886), identified as Brucea antidysenterica J. F. Mill., is based on a misidentification. The specimen is actually Polyscias fulva (Hiern) Harms in the Araliaceae, a genus and species not previously recorded from the Peninsula although a common pioneer tree of submontane forest in neighbouring continental Africa.     

担子菌门总革菌科中国新记录种紫黑点壳菌

[背景] 在陕西省的毛泡桐腐木桩上观察和采集到一株绒毛状真菌子实体,编号为HMNWAFU-CF-HS002。[目的] 为了确定该菌的分类地位,对其进行形态观察及分子鉴定。[方法] 获取宏观彩色图像并对显微结构进行测量、统计和绘图。此外,用PDA培养基分离纯化该菌的培养物,并结合最大似然法、最大简约法和贝叶斯法进行rDNA ITS分子系统学研究。[结果] HMNWAFU-CF-HS002的形态特征与Punctularia atropurpurascens高度相似。系统发育分析将HMNWAFU-CF-HS002聚在P.atropurpurascens的单系分支中。[结论] 结合形态学特征与系统发育结果,HMNWAFU-CF-HS002被鉴定紫黑点壳菌（Punctularia atropurpurascens）,为中国的新记录种。此外,毛泡桐为其新记录寄主。至此,Punctularia属下的3个种,均在中国有分布记录。     

Cis-trans position effect in Salmonella phage P22

Summary Two nonsense mutants of Salmonella form a burst size in mixed infection of non-permissive bacteria which lies above that for non-complementing pairs but below that expected for complementation. The two mutants map closely together.To determine whether the two mutants reside in different genes or in the same gene, single bursts following mixed infection of non-permissive bacteria were analyzed for the relative frequency of wild type versus mutant phage. The results indicate that the two mutants lie in two neighboring genes. The mutants exhibit a cis-trans position effect characteristic of structural genes in bacterial operons.     

Origin of the subgeneraCyclampterium, Paralampterium andSciadiopeplus fromLophocyrtis (Lophocyrtis) (Radiolaria, Theoperidae)

Work on the exceptionally well-preserved, rapidly accumulating Bath Cliff Section, Barbados and supplementary Deep Sea Drilling Project samples, has revealed the evolutionary origins of three stratigraphically useful species in theCryptoprora ornata Zone straddling the Eocene/Oligocene boundary and demonstrated the origin of the genusCyclampterium. Elucidation of the origin ofCyclampterium milowi necessitates a revision of the generaLophocyrtis andCyclampterium.Lophocyrtis (Lophocyrtis)jacchia is the ancestor ofL. (Cyclampterium)hadra, the earliest member in the subgenusCyclampterium which comprises the anagenetic lineage leading fromL. (C.)hadra toL. (C.)neatum. The monotypic subgenusSciadiopeplus branches off from an early member in theCyclampterium lineage. The new speciesL. (L.)exitelus andL. (S.)oberhaensliae terminate the subgeneraLophocyrtis andSciadiopeplus, respectively. During the investigation it also became clear that morphotypes resembling earlyL. (C.)milowi could be found in mid and high latitude assemblages in the late Early and late Middle Eocene. The origin of one these morphotypes was also traced toL. (Lophocyrtis)jacchia giving rise to the new subgenusParalampterium. This lineage includes the new speciesL. (Paralampterium)dumitricai and two species questionably assigned to it,L. (Paralampterium)?longiventer and the new speciesL. (Paralampterium) ?galenum. The relationship ofL. (P.)dumitricai toL. (P.) ?longiventer andL. (P.) ?galenum is unknown.     

Molecular analysis of two genes between let-653 and let-56 in the unc 22(IV) region of Caenorhabditis elegans

Summary A previous study of genomic organization described the identification of nine potential coding regions in 150 kb of genomic DNA from the unc-22(IV) region of Caenorhabditis elegans. In this study, we focus on the genomic organization of a small interval of 0.1 map unit bordered on the right by unc-22 and on the left by the left-hand breakpoints of the deficiencies sDf9, sDf19 and sDf65. This small interval at present contains a single mutagenically defined locus, the essential gene let-56. The cosmid C11F2 has previously been used to rescue let-56. Therefore, at least some of C11F2 must reside in the interval. In this paper, we report the characterization of two coding elements that reside on C11F2. Analysis of nucleotide sequence data obtained from cDNAs and cosmid subclones revealed that one of the coding elements closely resembles aromatic amino acid decarboxylases from several species. The other of these coding elements was found to closely resemble a human growth factor activatable Na⁺/H⁺ antiporter. Pairs of oligonucleotide primers, predicted from both coding elements, have been used in PCR experiments to position these coding elements between the left breakpoint of sDf19 and the left breakpoint of sDf65, between the essential genes let-653 and let-56.     

Die Schneefinken (GattungenMontifringilla undLeucosticte)

Ohne Zusammenfassung     

Predation by Callinectes sapidus (Rathbun) within Spartina alterniflora (Loisel) marshes

This study examined predation by the blue crab, Callinectes sapidus Rathbun, within intertidal Spartina alterniflora (Loisel) marshes of Dauphin Island, Alabama. Species and size preferences displayed by the predator when foraging within the marsh were investigated using nektonic, epifaunal, and infaunal prey populations including Fundulus similis Baird and Girard, Littorina irrorata Say, and Geukensia demissa Dillwyn.

Short-term field experiments involving the use of predator inclusion cages, in which the relative abundances of all prey species and the density of macrophyte vegetation were manipulated, indicated that mean mortality differed significantly among species. Blue crabs exhibited a distinct species preference for Littorina, and to a lesser extent, for Fundulus. However, the predator rarely choses infaunal individuals. Within predator inclusion cages, size selection by the crabs among three size classes of each prey was evident for Littorina and Fundulus but not for Geukensia. Blue crabs tended to select intermediate-sized snails and large fish while not exhibiting a size preference for infaunal bivalves.

In the marsh, mean percentage of the Littorina population within the 14–18 mm size class exhibited an increased mortality as compared to two other size classes, which was negatively correlated with increasing tidal height. Such a relationship may have been due to a decreasing gradient of crab predation associated with increasing tidal height. Geukensia size class distributions showed little evidence of differences along the tidal height gradient. No data are available for Fundulus, a mobile species which would not experience such differential predation along a marsh gradient.

In comparing crab predation patterns among prey species, it is apparent that Callinectes utilizes prey species differentially. Such differential utilization may be based on optimization of energy yield and minimization of energy expenditure. Thus, the preference of blue crabs for nektonic and epifaunal prey is hypothesized to be the result of a smaller energy expediture as a result of the crab's visual evaluation of these prey. Infaunal prey species (e.g., Geukensia) require a greater energy investment because of the necessity of excavating the prey item. Such prey also allow little selection by size because of being cryptic.     

Biogeography of Hysterangiales (Phallomycetidae, Basidiomycota)

To understand the biogeography of truffle-like fungi, DNA sequences were analysed from representative taxa of Hysterangiales. Multigene phylogenies and the results of ancestral area reconstructions are consistent with the hypothesis of an Australian, or eastern Gondwanan, origin of Hysterangiales with subsequent range expansions to the Northern Hemisphere. However, neither Northern Hemisphere nor Southern Hemisphere taxa formed a monophyletic group, which is in conflict with a strictly vicariant scenario. Therefore, the occurrence and importance of long-distance dispersal could not be rejected. Although a pre-Gondwanan origin of Hysterangiales remains as a possibility, this hypothesis requires that Hysterangiales exist prior to the origin of the currently recognized ectomycorrhizal plants, as well as the arrival of mycophagous animals in Australia. This also requires that a basal paraphyletic assemblage represents parallel evolution of the ectomycorrhizal symbiosis, or that Hysterangiales was mycorrhizal with members of the extinct flora of Gondwana. Regardless, models for both ancient and more recent origins of Hysterangiales are consistent with truffle-like fungi being capable of transoceanic dispersal.     

A review of the systematics of the sleeper shark genus Somniosus with redescriptions of Somniosus ( Somniosus) antarcticus and Somniosus ( Rhinoscymnus) longus (Squaliformes: Somniosidae)

Past treatments of the sleeper shark genus Somniosus generally recognize three species: S. microcephalus, S. pacificus, and S. rostratus. Based on morphometrics and meristics, we conclude that this genus includes two subgenera (Somniosus and Rhinoscymnus) and five species. Subgenus Somniosus differs from Rhinoscymnus by being much larger when adult and in having more numerous tooth rows in the lower jaw, hooklike rather than leaf-shaped dermal denticles, more numerous spiral valve and vertebral counts, and a poorly calcified vertebral column. Subgenus Somniosus includes S. (Somniosus) microcephalus and S. (S.) pacificus of the Northern Hemisphere and S. (S.) antarcticus of the Southern Hemisphere. Although Somniosus antarcticus has been synonymized with S. microcephalus and identified as S. pacificus in past literature, it differs from S. microcephalus in having a shorter interdorsal space, a more posterior first dorsal fin, lower dorsal fins, more numerous tooth rows in the lower jaw, more numerous spiral valve counts, and fewer precaudal vertebrae. Somniosus antarcticus also differs from S. pacificus by having a shorter prebranchial length, lower dorsal fins, more numerous spiral valve counts, and slightly more precaudal vertebrae. Subgenus Rhinoscymnus includes S. (Rhinoscymnus) rostratus from the eastern North Atlantic and Mediterranean Sea (senior synonym of S. bauchotae) and S. (R.) longus from the western Pacific Ocean. Somniosus longus has been synonymized with S. rostratus, but differs in having a relatively longer second dorsal fin, a slightly larger eye, more lower tooth rows, and slightly higher spiral valve counts. Both Somniosus (Somniosus) antarcticus and S. (Rhinoscymnus) longus from the Pacific Ocean were redescribed. A key to the species and the geographical distribution of all species are provided.     

dnaA suppressor (dasF) mutants of Escherichia coli are stable DNA replication (sdrA/rnh) mutants

Summary The possible allelic relationship between dasF (dnaA suppressor) and sdrA/rnh (stable DNA replication/RNase H) mutations was examined. dasF mutations could not only suppress various dnaA(ts) mutations, but also the insertional inactivation of the dnaA gene or deletion of the oriC sequence, as could sdrA mutations. dasF mutants were found to exhibit the stable DNA replication phenotype, and the sensitivity to rich media, of sdrA mutants. The dasF and sdrA mutations were mapped very closely between metD and proA on the E. coli genetic map. The mutations were recessive to the wild-type allele for all the above phenotypes. It was concluded that dasF is allelic to sdrA/mh.     

Neoechinorhynchus (Neoechinorhynchus) chimalapasensis n. sp. (Acanthocephala: Neoechinorhynchidae) from the freshwater fish Awaous banana (Valenciennes) (Gobiidae) in Mexico

Neoechinorhynchus (Neoechinorhynchus) chimalapasensis n. sp. (Eoacanthocephala: Neoechinorhynchidae) is described from the intestine of Awaous banana (Valenciennes) (Pisces: Gobiidae) collected in the Río Negro, a tributary in the upper Río Coatzacoalcos basin, Santa María Chimalapa, Oaxaca State, Mexico. It is the third species of Neoechinorhynchus Stiles & Hassall, 1905 described from Mexican freshwater fishes, although 36 other species are known from freshwater fishes in the Americas. Like four other species of Neoechinorhynchus from freshwater fishes in North America and Mexico, N. (N.) limi Muzzall & Buckner, 1982, (N.) rutili (Müller, 1780) Stiles & Hassall, 1905, N. (N.) salmonis Ching, 1984 and N. (N.) roseus Salgado-Maldonado, 1978, males and females of the new species are less than 20 mm in length, lack conspicuous sexual dimorphism in size, have a small proboscis of about 0.1 mm in length with the largest hooks being the anteriormost, about 30–90 μm in length and of equal size, and have subequal lemnisci, larger than the proboscis receptacle but still relatively short and, in males, generally restricted to a position considerably anterior to the testes. The new species is closest to N. (N.) roseus, but it is distinguished from it by having: (1) a slightly larger cylindrical proboscis with almost parallel sides versus a globular proboscis with a rounded tip which is shorter and somewhat wider in N. (N.) roseus; (2) smaller but robust anterior proboscis hooks that do not reach the equatorial level or extend beyond the hooks of the middle circle as in N. (N.) roseus; and (3) the female gonopore situated ventrally subterminal, as opposed to being a significant distance anteriorly to the posterior extremity in N. (N.) roseus.     

Nomenclatural changes resulting from the transfer of tropical African Sarcostemma to Cynanchum ( Apocynaceae : Asclepiadoideae )

Summary  Four species of tropical African Sarcostemma are transferred to Cynanchum together with two subspecies of S. viminale. In addition, Sarcostemma mulanjense is reduced to subspecific rank under C. viminale.