Mapping abundance distribution of small pelagic species applying hydroacoustics and Co-Kriging techniques

Hydroacoustic technology provides ground tools for the estimation of abundance and spatial distribution of pelagic species. The final products of such surveys, the interpolated choropleth maps, are based on a Geostatistical analysis of the acoustic measurements to minimise, as much as possible, the interpolation error, and to quantify uncertainty. The current study is based on fisheries acoustic measurements and satellite images covering the sea area of Thermaikos Gulf over the years 1996, 1997 and 1998. Spatial interpolations describing the abundance and distribution of small pelagic species in the research area, as well as sea surface temperature (SST), Chlorophyll-a content (SSC) and average depth, were produced, based on Ordinary and Universal Kriging and Co-Kriging Geostatistical methods. The results of the Geostatistical analysis showed that the Co-Kriging spatial interpolation method produced the best results regarding fish abundance when SST and average depth variables were included in the model. The latter indicates that there is an existing spatial cross-correlation between fish abundance and the environmental variables. Consequently, the potential reduction of the overall error in the estimation process, as presented in this study, is very significant, particularly with regard to error reduction in stock assessment and management. Guest editor: V. D. Valavanis Essential Fish Habitat Mapping in the Mediterranean     

Indicators quantifying small pelagic fish interactions: application using a trophic model of the southern Benguela ecosystem

Three indicators quantifying interactions between species are developed for an upwelling system to provide useful measures for the comparison of marine ecosystem structure and function. Small pelagic fish are dominant in upwelling systems, and by definition, they are pivotal in a wasp-waist upwelling system. The indicator of interaction strength (IS) quantifies the effect that a change in biomass of one group has on abundance of other groups. The functional impact (FI) indicator quantifies the trophic impacts of species on their own and other functional groups or feeding guilds. The trophic replacement (TR) indicator quantifies the trophic similarity between a species that is removed from an ecosystem and other species in that ecosystem, i.e. it quantifies the ability of one group to trophically replace another. A trophic model of the southern Benguela ecosystem is used as an example for the application of the indicators. The strong similarities in trophic functioning of the southern Benguela ecosystem in the anchovy-dominated system of the 1980s, and the 1990s when there was a shift towards greater sardine abundance, are explained by the mutual trophic replacement abilities of anchovy and sardine. Differences between the proposed indicators and mixed trophic impact assessment are highlighted, mainly resulting from the static versus dynamic nature of the models upon which they are based. Trophic indicators such as those presented here, together with other kinds of ecosystem indicators, may assist in defining operational frameworks for ecosystem-based fisheries management.     

Evolution of cannibalism in the larval stage of pelagic fish

Larvae of several ocean pelagic fish species, such as tunas and marlins, have been known to have large jaws, but the ecological significance of this unique morphological character has been hardly analyzed in evolutionary ecology. Pelagic spawners produce small and nutrition-poor ova, and spawning and nursery grounds of the open ocean migratory fishes are oligotrophic. We hypothesize that cannibalism would be a possible life style in the larval period and the large mouth gape would be an adaptive morphological characteristic for a cannibal in the oligotrophic pelagic environment. We showed that mouth gape size of the open ocean pelagic fish is significantly larger than that of offshore/coastal pelagic fish in larval period. A mathematical model demonstrated that cannibalism would tend to evolve in high sea environment. Our findings suggest an evolutionary pattern of cannibalism trait in the larval stage of pelagic fishes. This revised version was published online in July 2006 with corrections to the Cover Date.     

Temporal variability of pelagic fish assemblages around fish aggregation devices: biological and physical influences

Pelagic fishes were counted around four fish aggregation devices (FADs) moored between 3 and 10 km offshore on the continental shelf off Sydney, Australia. Visual counts were made at FADs on 81 days periodically from April 1999 to April 2002. Surface water temperature and current speed were also measured at the FADs. Assemblages of fishes at FADs followed a seasonal pattern, however, biological and physical variables influenced seasonal structure greatly. Abundances at FADs were greatest in spring due to the appearance of large schools (100s to 1000s) of juvenile Trachurus sp. In contrast, diversity was far greater in summer and autumn, principally due to the appearance of schools (10s to 100s) of juvenile Coryphaena hippurus (Coryphaenidae), and other warm water species from January to May when water temperatures were >20° C. Short‐term variability differed among species; C. hippurus fluctuated greatly among counts separated by 2–3 days, while Seriola lalandi (Carangidae) and Alutera monoceros (Monacanthidae) abundances were more stable, indicating greater residence times at FADs for these two species. Marked differences in fish assemblages occurred between times when predators were present and absent, with few small fishes being observed when piscivorous predators occurred at FADs, regardless of season. Furthermore, abundances of C. hippurus and A. monoceros were correlated with current speed, with greatest abundances observed when currents were strong and weak, respectively. The results indicated that much of the temporal variability in fish assemblages at moored FADs could be explained by biological and physical factors.     

Population dynamics of three Neotropical small mammals: Time series models and the role of delayed density-dependence in population irruptions

It is widely believed that only precipitation levels (through increased primary production) determine irruptions of small mammals in semi-arid areas of western South America. Nevertheless, density-dependent factors may also drive population fluctuations. To test statistically these putative effects we analysed 11 years of population records on three sympatric species of small mammals at two different habitat types in north central Chile. We applied the classical diagnostic tools of time series analysis (the autocorrelation function: ACF) to the observed time series of three neotropical small mammals. We also used simple linear autoregressive time series models to reconstruct the endogenous dynamics of these populations. The analysis strongly suggests that population fluctuations of the three species have an important density-dependent component, with the most irruptive species (Phyllotis darwini, Waterhouse 1837) displaying stronger second order population feedbacks than the other two (Akodon olivaceus, Waterhouse 1837 and Thylamys elegans, Waterhouse 1839). The latter two species showed direct density-dependent feedbacks. We hypothesize that the frequent population outbreaks of P. darwini (and perhaps of other species) in semi-arid regions of western South America, may be the result of population-level (direct density- dependence) and community-level processes (delayed density-dependence), interacting with exogenous perturbations (rainfall and associated primary production).     

Sea warming and fish distribution: the case of the small pelagic fish, Sardinella aurita, in the western Mediterranean

This study analyses the temporal and spatial changes in abundance and distribution of the warm water species round sardinella (Sardinella aurita) in the western Mediterranean over the last decades in relation to sea water temperature. In the western Mediterranean basin (1950–2003), a significant positive relationship was found between round sardinella landings and temperature anomalies. Along a latitudinal gradient off the Mediterranean Iberian coast (1989–2004), a gradual increase in species abundance was observed from south to north, with a certain time lag going northwards, associated with the increase in sea water temperature. The abundance of round sardinella in the two warmest and southernmost areas was positively and significantly correlated with sea surface temperature registered during the start of gonad maturation the previous year. In addition, the positive relationship established between water temperature and abundance of round sardinella in the coldest and northernmost study area demonstrates that there is a temperature limit for the distribution of this species in the western Mediterranean. In addition, this study analyses round sardinella larvae distribution and abundance in the summers of 2003 and 2004, and conducts a comparison with the situation 20 years ago (summer 1983). Results show a marked increase in larval abundance during the last decades and the present appearance of larvae in the northernmost study areas, where they did not occur 20 years ago. This indicates the successful reproduction of round sardinella in the northern part of the Mediterranean, where the species has expanded, confirming its establishment in the area.     

Climate change scenarios experiments predict a future reduction in small pelagic fish recruitment in the Humboldt Current system

The Humboldt Current System (HCS) sustains the world′s largest small pelagic fishery. While a cooling of this system has been observed during recent decades, there is debate about the potential impacts of rising atmospheric CO₂ concentrations on upwelling dynamics and productivity. Recent studies suggest that under increased atmospheric CO₂ scenarios the oceanic stratification may strongly increase and upwelling‐favorable winds may remain nearly constant off Peru and increase off Chile. Here we investigate the impact of such climatic conditions on egg and larval dispersal phases, a key stage of small pelagic fish reproduction. We used larval retention rate in a predefined nursery area to provide a proxy for the recruitment level. Numerical experiments are based on hydrodynamics downscaled to the HCS from global simulations forced by pre‐industrial (PI), 2 × CO₂ and 4 × CO₂ scenarios. A biogeochemical model is applied to the PI and 4 × CO₂ scenarios to define a time‐variable nursery area where larval survival is optimum. We test two distinct values of the oxycline depth that limits larval vertical distribution: One corresponding to the present‐day situation and the other corresponding to a shallower oxycline potentially produced by climate change. It appeared that larval retention over the continental shelf increases with enhanced stratification due to regional warming. However, this increase in retention is largely compensated for by a decrease of the nursery area and the shoaling of the oxycline. The underlying dynamics are explained by a combination of stratification effects and mesoscale activity changes. Our results therefore show that future climate change may significantly reduce fish capacity in the HCS with strong ecological, economic and social consequences.     

Run timing of pelagic fishes in Gulf of St Lawrence: area and species effects

Run timings of four ubiquitous pelagic fishes in the Gulf of St Lawrence were compared for area and year effects. Run timing of alewife, Alosa pseudoharengus (Wilson), smelt, Osmerus mordax (Mitchill), and Atlantic salmon, Salmo salar L., was estimated at index rivers, and time of arrival of herring, Clupea harengus L., on spawning grounds was estimated from gillnet fisheries located around the Gulf, 1978–87. Time of pelagic fish migrations had strong species and area effects, but weak year effects. The species had their own unique migration times and durations, and could be divided into two groups: herring and smelt, which arrived in all areas of the Gulf at the same time; and alewife and salmon, which had significant area effects. Environmental data were not correlated with run timing. There was little annual variation in run timing among early-run species; only alewife had significant year effects. There was annual variation in the timing of late-run species, but it was not correlated with proximate environmental factors. Because run timing is an easily defined stock characteristic, observations over large areas and many years might be useful for understanding the impact of large-scale environmental changes on natural populations.     

Identifying the spatial scale of density-dependent interaction of predators with schooling fish in the southern Labrador Current

Previous work along the coast of Newfoundland has shown that aggregative responses of puffins, Fraiercula arctica , and common guillemots, Uria aalge , to schooling fish, primarily capelin, Mallotus villosus , occur at spatial scales of 2-6 km. The present work tests the hypothesis that coastal upwelling results in aggregation of capelin at this scale, and that the scale of interaction with predators can be predicted from wind-driven coastal upwelling. An observational experiment in 1987 showed that a relatively simple physical model could be used to predict the spatial scale of upwelling, that schooling fish aggregate at this scale after upwelling, that aggregation of schooling fish at the scale of upwelling decays as upwelling relaxes, and that the spatial association of puffins and guillemots with schooling fish reaches a maximum at this scale. These results suggest that relatively simple physical theory can, in some cases, be used to identify the spatial scale of interaction of predators with prey.     

Response of the fish community to human-induced changes in the Biobío River in Chile

1. The Biobío River basin of south‐central Chile exhibits the greatest species richness of all rivers in Chile, where it is one of the most important rivers for human use. Use for provision of drinking water, irrigation, sewage effluents, hydropower generation and industry has increased dramatically during the last decade. To help understand the effects of human activities on the Biobío River, we document recent changes in the fish community. 2. In this study, current patterns of distribution and abundance of fishes were compared with the expected longitudinal pattern, and to historical data from studies conducted before the rapid development of the last decade. Fish distribution, biomass, abundance and diversity were studied at eight sampling stations in the middle and lower zones of the river in both high and low flow seasons. 3. Contrary to the pattern observed in less impacted river systems, species richness (S), diversity (H′) and abundance [calculated catch per unit effort (CPUE)] all tended to decrease downstream from the uppermost sampling locations. Mean S decreased from 7.9 to 5.4, mean H′ decreased from 0.7 to 0.4, and mean CPUE decreased from 111 to 43 from hyporithral to potamal locations. 4. Comparison with previous records indicates loss or reduction in distribution of native species, and a concurrent expansion in distribution and abundance of tolerant introduced species (e.g. Gambusia holbrooki, and Cyprinus carpio) over the last 10–15 years. These comparisons suggest a large‐scale and long‐term effect of recent human impacts on the river.     

Trophic niche overlap between round sardinella (Sardinella aurita) and sympatric pelagic fish species in the Western Mediterranean

The northward expansion of round sardinella (Sardinella aurita) in the Mediterranean Sea, together with declines and fluctuations in biomass and landings of European sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) observed in recent decades, may suggest potential inter‐specific competition in the pelagic domain. The coexistence of sympatric zooplanktivorous fish species might therefore be exposed in part to trophic niche overlap and competition for food. Combining visual diet characterization under the microscope with DNA metabarcoding from stomach contents of fish collected in spring results show that predation on relatively large krill is equally important for sardinella than for the other two niche overlapping species. Furthermore, an important overlap is found in their isotopic niche, especially with anchovy, using nitrogen (δ¹⁵N) and carbon (δ¹³C) stable isotopes in muscle tissue. In fact, the three fish species are able to feed effectively in the whole prey size spectrum available during the sampled season, from the smallest diatoms and copepods to the larger prey (i.e., decapods and euphausiids), including fish larvae. Moreover, effective predation upon other large prey like siphonophores, which is observed only when multi‐proxy analyses in stomach contents are applied, might also be relevant in the diet of sardinella. The overlapping diet composition in spring, together with the effective use of food resource by sardinella, can be of special interest in potential future scenarios with warmer water temperature leading to lower zooplankton and/or higher jellyfish availability, where sardinella may take advantage over other species due to its feeding plasticity.     

Population dynamics of prey exhibiting inducible defenses: the role of associated costs and density-dependence

The effect of antipredator behavior on the dynamics of a resource-consumer model was analyzed in relation to the magnitude of associated costs, and the strength of density-dependence. For this purpose, I present a deterministic continuous resource-consumer model that exhibits biomass conversion, structural homogeneity, and competition for renewable and fixed resources as separate processes. Antipredator behavior is incorporated as an inducible response to consumer density, and has metabolic and feeding costs. By means of numerical methods, I show: (1) that antipredator behavior is stabilizing for certain parameter ranges, where other stabilizing forces do not dominate the dynamics; (2) intraspecific competition for both fixed and renewable resources have a stabilizing role; (3) metabolic cost is always stabilizing, and feeding cost can be stabilizing or destabilizing, depending on the relative strength of the two competition forces.     

Employing DNA barcoding as taxonomy and conservation tools for fish species censuses at the southeastern Mediterranean,a hot-spot area for biological invasion

This study evaluates the utility of DNA barcoding (mitochondrial cytochrome oxidase subunit I; COI) as a biodiversity and conservation applied tool for identifying fish fauna from the southeastern Mediterranean (the continental coast of Israel), a hot-spot area for biological invasion, also with an eye to establish the foundation for follow-up studies that will use environmental DNA (eDNA) tracks of native and invasive species, and for the application of eDNA concepts and methodologies in nature conservation. We established a dataset of 280 DNA barcodes, representing 110 marine fish species (all identified by a taxonomist), belonging to 75 native and 35 Lessepsian migratory species that were tested within and against the BOLD system database. Most of the query sequences showed 98% matches with reference DNA barcodes in the BOLD system excluding two Trachurus species, three Dasyatis pastinaca and two Rhinobatos rhinobatos individuals. Relatively high intraspecific genetic distances were observed in two Elasmobranchii species (8.83%–18%), suggesting possible cryptic species. In contrast, relatively low interspecific genetic distances were found between two Actinopterygii species (1.54%). Gobiidae family members were observed as being the most scattered on the Bayesian tree. Out of the 110 fish species, 48 were taxonomically discordant with the BOLD BINs (4 at the family level, 15 at the genus level and 29 at the species level), 53 were concordant and 9 were singletons. Discordancy was noted for some Diplodus and Fistularia species during the BOLD BIN analysis. Apogon queketti, Champsodon nudivittis and Cheilodipterus novemstriatus were uploaded to the BOLD system for the first time. We elucidated 177 haplotypes, 122 for the native fish species and 55 for the Lessepsian species. The results will allow the evaluation of invasive species success and will help developing improved policies for the conservation of Mediterranean biodiversity.     

Population dynamics of two small cichlid fish species in a tropical man-made lake (Lake Kariba)

The population dynamics of two small cichlid fishes (Pharyngochromis darlingi andPseudocrenilabrus philander) were studied in Lake Kariba, a very large African man-made lake. They are of no economic importance but make up about 14% and 7% respectively of the inshore fish population and are the major components of the diet of fish-eating birds on the lake.P. darlingi isthe larger species (L = 156.5 mm) and is found on both shelving and steep, eroding shores. Its mortality rate differs in each habitat (Z = 0.44 and 0.72 month^–1 respectively), only 0.79% survive for 12 months and its % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9% vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-x% fr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaamiuaiaac+% cadaqdaaqaaiaadkeaaaaaaa!384D!\[P/\overline B \] ratio is 5.45 (on shelving shores).Ps. philander is smaller (L = 83.9 mm) and is restricted to shelving areas with abundant vegetation. Its monthly mortality rate was high (Z = 7.69), only 0.05% survive to 12 months whilst its % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9% vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-x% fr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaamiuaiaac+% cadaqdaaqaaiaadkeaaaaaaa!384D!\[P/\overline B \] ratio was very high (7.69). The estimates of growth obtained forP. darlingi differ considerably from those given in an earlier study in Lake Kariba and some possible reasons for this are discussed. In suitable habitats, the combined production of both species could be 40 kg ha^–1 yr^–1 which indicates their potential importance to the ecology of the lake.     

An invasive fish species within its native range: community effects and population dynamics of Gambusia affinis in the central United States

1. Management of invasive species benefits from detailed information on the biology of the invaders, both from where they have already invaded, and from within their areas of origin. Western mosquitofish, Gambusia affinis, is a widely invasive and destructive freshwater fish. However, within its native range, G. affinis co‐exists with many other fish species in a wide variety of habitats without obvious harm. 2. In this study, we used data on fish communities within the native range of G. affinis at 154 sites across a broad spatial scale to examine the effects of G. affinis on species richness and diversity of residual (species other than G. affinis) fish assemblages. We further used data based on annual samples at eight fixed river sites over 18 summers to examine temporal population dynamics of G. affinis and to test factors associated with population fluctuations. 3. Higher residual species richness occurred in the presence of G. affinis, but residual diversity did not differ. We found an inverse relationship between relative abundance of G. affinis and residual species richness (although effect size was extremely small), but no effect on residual diversity. 4. Gambusia affinis populations fluctuated markedly across summers at all eight fixed sites, but population sizes at a site over time were not autocorrelated. However, population fluctuations were highly correlated among sites across all years, suggesting that regional factors influenced population size. Regional abundance of G. affinis did not correlate with drought, rainfall or winter temperature, but varied with spring temperature. We suggest earlier onset of reproduction in warmer springs resulted in larger summer populations. 5. Overall, within its native range, G. affinis does not appear to impact negatively on the assemblages in which it occurs, possibly due to fluctuations in its density. These findings suggest that introduced Gambusia populations, and those of other invasive species, warrant careful monitoring over long periods of time where they have invaded. Long‐term monitoring of new populations can establish if they are prone to ‘boom and bust’ dynamics, in which case the invader may be less a threat than sometimes assumed. Population information from long‐term studies, either in their native ranges or at invaded sites, can thus help to form the basis of prudent, cost‐effective management strategies for invasive organisms.     

基于环境DNA宏条形码技术的北京地区鱼类多样性调查和外来鱼种入侵风险评估

[目的]调查北京地区鱼类多样性和群落分布及评估外来鱼种的入侵风险.[方法]选取北京地区水库、湖泊和河流3种水体类型共33个采样点,于2020年6月10—17日开展水生态监测,利用环境DNA宏条形码技术对各样点的鱼类多样性和群落结构进行监测和分析,对目前北京地区水生态系统中本地鱼种和外来鱼种进行分类汇总,并评估典型外来入...     

Interspecific variation in sustained swimming ability of late pelagic stage reef fish from two families (Pomacentridae and Chaetodontidae)

 Characteristics of the pelagic stages of reef fishes have generally been investigated at the family level, which may mask important differences among species. Here the variation in sustained swimming ability of the late pelagic stages is examined among species, within two families (Pomacentridae and Chaetodontidae). The pomacentrids displayed a 7.5-fold difference in sustained swimming ability across 24 species, while the chaetodontids displayed a 2-fold difference across 10 species. The variation within the Pomacentridae was not related to pelagic larval duration, post-settlement habitat or taxonomy. There was, however, a significant correlation between sustained swimming ability and total length (TL) of individuals (r=0.435, P<0.0001). Differences in the mean distance swum by pomacentrid species, however, was most strongly related to differences in mean wet weight (r=0.814, P<0.0001). When the mean distance swum by species was scaled with respect to mean TL there was still a strong correlation with mean wet weight (r=0.644, P<0.005). Among chaetodontid individuals TL and sustained swimming ability were not correlated (r=−0.004, P=0.978). Furthermore, sustained swimming ability was not significantly related to the trans-oceanic distribution of species in either family. The variation in sustained swimming ability, however, may contribute to explanations of the observed levels of gene flow within populations. Accepted: 24 November 1997     

Structuring of the cyanobacterial community by pelagic fish in subtropical reservoirs: experimental evidence from Australia

1. Subtropical reservoirs of Australia are commonly subject to summer blooms of cyanobacteria. The potential for food web manipulation to control cyanobacterial blooms was investigated in Lake Maroon, south east Queensland using enclosures in which the density of the Australian gudgeon Hypseleotris spp. was manipulated. 2. Zooplankton biomass and community structure were strongly affected by fish density. A size dependent predation effect of Hypseleotris on zooplankton was observed at ambient fish densities, and the community shifted towards a dominance of copepod juveniles and nauplii. Substantial increases in the populations of Ceriodaphnia and calanoid copepods were observed at low fish densities and in the absence of fish. 3. At ambient fish densities total phytoplankton and the proportion of cyanobacteria were maintained at levels similar to those prevailing at day 0. Total phytoplankton and the proportion of cyanobacteria decreased substantially at low fish densities and in the absence of fish. Chlorophytes became dominant in the ‘no fish’ treatment and the grazing‐resistant species Oocystis and Dictyosphaerium were significantly higher than at ambient fish densities. 4. The experiment demonstrated a strong positive relationship between Hypseleotris density and cyanobacteria, and the results suggest that subtropical reservoirs may be suited to food web manipulation as a means of controlling summer cyanobacterial blooms.     

Responses of the northern anchovy to the dynamics of the pelagic environment: identification of fish behaviours that may leave the population under risk of overexploitation

Northern anchovy Engraulis mordax , in an upwelling area off the west coast of Baja California, Mexico, had several strategies in response to chlorophyll a distribution and availability. When the pigment was scarce, northern anchovies practically disappeared from the area and they returned to coastal waters when it was abundant. The fish gathered in specific areas where low turbulence mixing and high concentrations of chlorophyll a existed. The northern anchovies, responding to food concentration in a stable environment, were probably vulnerable to overexploitation because they were highly concentrated. More than 80% of the total fish density, estimated by acoustics, was recorded in a reduced area. Northern anchovies may have been vulnerable to the purse‐seiner fleet because they were swimming at shallow depth; they were close to shore not far from the fleet's base and they were concentrated in an area where several fishing boats could catch them. Studying the responses of shoaling fishes to fluctuation in the pelagic environment, with the intention of identifying behaviours that may leave the stock highly vulnerable to fishing, may help guide their management.