Adaptive traits of bark and ambrosia beetle-associated fungi

A phenotype is the expression of interactions between species genotype and environment. We quantified the contributions of ecological and phylogenetic associations to phenotypic variation in Geosmithia fungi. Geosmithia are symbiotic beetle-associated saprotrophs with a range of life histories and host specificities, including obligate nutritional beetle mutualists (ambrosia fungi) and phytopathogens. We hypothesized that: (1) species phenotypes are better explained by their ecology than by their phylogenetic relationships; (2) niche specialization was accompanied by enzymatic capability losses; and (3) ambrosia Geosmithia species have higher nutritional quality and antibiotic capabilities than species with facultative symbioses. Our results confirmed that long-term co-evolved specialists have reduced metabolic breadth in comparison to generalists. Phytopathogenic G. morbida produces unique enzyme suites with affinity to ligno-cellulose. Mycelia of ambrosia fungi contain large amounts of oleic fatty acid with nutritive and possibly allelopathic function. Overall, our results indicate that Geosmithia ecology have greater effect on species phenotype than their phylogenetic relationships.     

Give-and-take: interactions between DNA transposons and their host plant genomes

Recent genome sequencing efforts have revealed how extensively transposable elements (TEs) have contributed to the shaping of present day plant genomes. DNA transposons associate preferentially with the euchromatic or genic component of plant genomes and have had the opportunity to interact intimately with the genes of the plant host. These interactions have resulted in TEs acquiring host sequences, forming chimeric genes through exon shuffling, replacing regulatory sequences, mobilizing genes around the genome, and contributing genes to the host. The close interaction of transposons with genes has also led to the evolution of intricate cellular mechanisms for silencing transposon activity. Transposons have thus become important subjects of study in understanding epigenetic regulation and, in cases where transposons have amplified to high numbers, how to escape that regulation.     

Reciprocal interactions between circadian clocks and aging

Virtually, all biological processes in the body are modulated by an internal circadian clock which optimizes physiological and behavioral performance according to the changing demands of the external 24-h world. This circadian clock undergoes a number of age-related changes, at both the physiological and molecular levels. While these changes have been considered to be part of the normal aging process, there is increasing evidence that disruptions to the circadian system can substantially impact upon aging and these impacts will have clear health implications. Here we review the current data of how both the physiological and core molecular clocks change with age and how feedback from external cues may modulate the aging of the circadian system.     

Comparative phytochemistry and plant taxonomy

Abstract

The chemotaxonomic approach to plant classification is illustrated by alkaloids, acetogenic quinones, iridoid compounds and cyanogenic constituents. Difficulties in the evaluation of similarities are discussed and the frequent occurrence of metabolic convergencies is stressed. Taxa used to illustrate the taxonomic meaning of chemical characters of plants are Colchicum, Dionco: phyllaceae, Ancistrocladaceae, Callitrichaceae, Hippuridaceae, Theligonaceae, Ranunculaceae, Magnoliidae and Angiosperms as a whole.     

Distinguishing Ophiostoma ips and Ophiostoma montium,two bark beetle-associated sapstain fungi

Two synonymous sapstain species, Ophiostoma montium and Ophiostoma ips, which are vectored by Dendroctonus ponderosae and various bark beetles, respectively, were differentiated into separate species using growth and molecular characteristics. Analysis of 32 isolates of the two species from different countries showed that O. ips was able to grow at 35 degrees C while O. montium was not. This growth-based differentiation was strongly supported by sequence data for the internal transcribed spacer (ITS), 5.8S and partial 28S rDNA, and the beta-tubulin genes. The beta-tubulin gene sequence data indicate that the two species can easily be differentiated with a single polymerase chain reaction (PCR) assay.     

Three new beetle-associated yeast species in the Pichia guilliermondii clade

New yeasts in the Pichia guilliermondii clade were isolated from the digestive tract of basidiocarp-feeding members of seven families of Coleoptera. A molecular phylogeny and unique traits placed eight isolates in Candida fermentati and three undescribed taxa in the genus Candida. The new species and type strains are C. smithsonii (type strain NRRL Y-27642^T), C. athensensis (type strain NRRL Y-27644^T), and C. elateridarum (type strain NRRL Y-27647^T). Based on comparison of small-and large-subunit rDNA sequences, C. smithsonii and C. athensensis form a statistically well-supported subclade with P. guilliermondii, C. xestobii, and C. fermentati; C. elateridarum is basal to this subclade.     

Complex interactions between a plant pathogen and insect parasitoid via the shared vector-host: consequences for host plant infection

Plant viruses modify the development of their aphid vectors by inducing physiological changes in the shared host plant. The performance of hymenopterous parasitoids exploiting these aphids can also be modified by the presence of the plant pathogen. We used laboratory and glasshouse microcosms containing beans (Vicia faba) as the host plant to examine the interactions between a plant virus (pea enation mosaic virus; PEMV) and a hymenopterous parasitoid (Aphidius ervi) that share the aphid vector/host Acyrthosiphon pisum. Neither PEMV-infection of V. faba, nor the carriage of PEMV virions by A. pisum, affected the growth or morphology of the aphid, or the oviposition behaviour and development of A. ervi. The presence of developing Aphidius ervi larvae within Acyrthosiphon pisum did not affect the ability of the aphids to transmit PEMV. However, by reducing their longevity, parasitism ultimately decreased the time viruliferous aphids were able to inoculate plants. In terms of virus dispersal, parasitized aphids exhibited more movement around experimental arenas than unparasitized controls, causing a slight increase in the proportion of beans infected with PEMV. Exposure to adult Aphidius ervi caused Acyrthosiphon pisum to rapidly drop off bean plants and disperse to new hosts, resulting in considerably higher plant infection rates (70%) than that seen in control arenas (25%). The results of this investigation demonstrate that when parasitoids are added to a plant-pathogen-vector system, benefits to the host plant due to reduced herbivore infestation must be balanced against the consequences of parasitoid-induced aphid dispersal and a subsequent increase in the level of plant infection.     

自然植物种群中病原菌与寄主植物相互作用的遗传学

在农业种群中,作物和菌病相互作用的遗传学已为人们所广泛研究,但对自然植物种群中病原菌与其寄主相互作用体系的某些重要现象却缺乏足够的重视。本文主要论述寄主与病原菌相互作用的遗传学本质;寄主抗性基因和病原菌毒性基因的获得代价及对各自适应力的影响;简单介绍了寄主-病原菌作用体系在种群水平上的遗传学内容及共进化的意义。     

Antibody expression in protease-deficient strains of the methylotrophic yeast Ogataea minuta

When human antibody genes were expressed in the methylotrophic yeast Ogataea minuta, the secreted antibody became partially degraded. To suppress the degradation, a vacuolar protease-deficient strain was constructed and its antibody production was evaluated. Although antibody productivity was improved in the vacuolar protease-deficient strain, the secreted antibody still became partially degraded. Peptide sequencing revealed that the cleavage occurred in the CH1 region of the heavy chain, implying that the cleavage was caused by an aspartic protease, Yps1p. To inhibit this cleavage, Yps1p-deficient strains were constructed and their antibody production was evaluated. As a result, the partial degradation of the antibody was suppressed in the O. minuta multiple-protease-deficient strains.     

Antagonistic within‐host interactions between plant viruses: molecular basis and impact on viral and host fitness

Double infections of related or unrelated viruses frequently occur in single plants, the viral agents being inoculated into the host plant simultaneously (co‐infection) or sequentially (super‐infection). Plants attacked by viruses activate sophisticated defence pathways which operate at different levels, often at significant fitness costs, resulting in yield reduction in crop plants. The occurrence and severity of the negative effects depend on the type of within‐host interaction between the infecting viruses. Unrelated viruses generally interact with each other in a synergistic manner, whereas interactions between related viruses are mostly antagonistic. These can incur substantial fitness costs to one or both of the competitors. A relatively well‐known antagonistic interaction is cross‐protection, also referred to as super‐infection exclusion. This type of interaction occurs when a previous infection with one virus prevents or interferes with subsequent infection by a homologous second virus. The current knowledge on why and how one virus variant excludes or restricts another is scant. Super‐infection exclusion between viruses has predominantly been attributed to the induction of RNA silencing, which is a major antiviral defence mechanism in plants. There are, however, presumptions that various mechanisms are involved in this phenomenon. This review outlines the current state of knowledge concerning the molecular mechanisms behind antagonistic interactions between plant viruses. Harmful or beneficial effects of these interactions on viral and host plant fitness are also characterized. Moreover, the review briefly outlines the past and present attempts to utilize antagonistic interactions among viruses to protect crop plants against destructive diseases.     

Reciprocal indirect interactions between Tetranychus urticae and Aphis gossypii mediated by cucumber plant

Induced plant responses to herbivory can alter plant quality and influence subsequent interactions with organisms that use that plant as food source. In this study, we conducted several experiments in order to understand whether preference and performance of the cotton aphid, Aphis gossypii (Hem: Aphididae) and the spider mite, Tetranychus urticae (Acari: Tetranychidae) are affected by the previous herbivory of conspecific or heterospecific species on cucumber plants. Longevity, fecundity and pre-imaginal development time were measured as performance criteria. In addition, we explored whether these effects are local or systemic. In the case of performance experiments, the results varied from negative to neutral depending on the performance criteria, no positive effect was observed in studied interactions. Also, depending on performance criteria, the previous herbivory affected the plant systemically, or locally. Results of preference experiments indicated that mites and aphids prefer to settle and produce offspring on control leaf disc to prevent detrimental effects of the previous herbivory. Spider mites showed a stronger preference than aphids in the detection of induced leaf discs, which resulted in more mites being present and laying more egg on control leaf disc in both local and systemic treatments. Performing both preference and performance experiments, not only reveals the effect of herbivores on each other's mediated by the plant but also reveals more information about the sensitivity of herbivores to change in the quality of their host.     

The effect of herbivore density on host plant mediated interactions between two insects

Recent work suggests that foliar- and root-feeding insects can interact in a novel plus-minus fashion. However, the effects of herbivores may be different at different densities. This paper describes two laboratory experiments investigating the effect of increasing insect density on plant performance and the host-plant mediated interaction between a leaf-mining fly and root-feeding chafer larvae. Above- and below-ground insect herbivory decreased plant performance. The effects of the root feeder were, for some parameters, different between the two densities of chafer larvae. Leaf mining significantly decreased the performance of the chafer larvae, while root herbivory was found to increase the pupal weight (related to fecundity) of the leaf miner. The effects of root herbivory suggest that the relationships between herbivore density and plant performance may be curved as the greater chafer density had no significant increased effect on the plants or foliar-feeding insects.     

Marking bark beetle parasitoids within the host plant with rubidium for dispersal studies

A technique using rubidium chloride (RbCl), a trace element, as internal label is proposed for marking hymenopteran parasitoids attacking a concealed host, Ips typographus L. (Coleoptera: Scolytidae). RbCl was introduced directly into spruce via the vascular system using glass tubing. RbCl passed through the food chain and was detected at the parasitoid level by electrothermal atomic absorption spectroscopy (EAAS) or flame emission spectroscopy (FES). Mark persistency until day 8 after emergence was tested in labelled Rhopalicus tutela (Walker) (Hymenoptera: Pteromalidae). The mark decreased with time only in fed females, probably due to excretion and/or egg resorption. The proportion of marked males did not vary with time or treatment.     

Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast Spathaspora passalidarum

Fermentation of cellulosic and hemicellulosic sugars from biomass could resolve food-versus-fuel conflicts inherent in the bioconversion of grains. However, the inability to coferment glucose and xylose is a major challenge to the economical use of lignocellulose as a feedstock. Simultaneous cofermentation of glucose, xylose, and cellobiose is problematic for most microbes because glucose represses utilization of the other saccharides. Surprisingly, the ascomycetous, beetle-associated yeast Spathaspora passalidarum, which ferments xylose and cellobiose natively, can also coferment these two sugars in the presence of 30 g/liter glucose. S. passalidarum simultaneously assimilates glucose and xylose aerobically, it simultaneously coferments glucose, cellobiose, and xylose with an ethanol yield of 0.42 g/g, and it has a specific ethanol production rate on xylose more than 3 times that of the corresponding rate on glucose. Moreover, an adapted strain of S. passalidarum produced 39 g/liter ethanol with a yield of 0.37 g/g sugars from a hardwood hydrolysate. Metabolome analysis of S. passalidarum before onset and during the fermentations of glucose and xylose showed that the flux of glycolytic intermediates is significantly higher on xylose than on glucose. The high affinity of its xylose reductase activities for NADH and xylose combined with allosteric activation of glycolysis probably accounts in part for its unusual capacities. These features make S. passalidarum very attractive for studying regulatory mechanisms enabling bioconversion of lignocellulosic materials by yeasts.     

Relationship between a host plant compound,myrcene and pheromone production in the bark beetle, IPS paraconfusus

The pheromonal components, ipsenol and ipsdienol were found in increasing quantities in hindguts of only the male sex of Ips paraconfusus following exposure of both sexes to a series of increasing concentrations of myrcene vapour. Hindguts of female and male beetles contained similar quantities of myrcene and other volatile compounds associated with myrcene exposure. Unexposed beetles of both sexes did not contain detectable amounts of any volatile compound. This indicates that myrcene induces or is a precursor for sex-specific pheromone biosynthesis.     

Disruptive selection maintains variable pheromone blends in the bark beetle Ips pini

The presence of heritable variation is a prerequisite for evolution, but natural selection typically reduces genetic variation. Variation can be maintained in traits under selection through spatial or temporal variation in fitness surfaces, frequency-dependent selection, or disruptive selection. We evaluated the maintenance of variation in the enantiomeric blend of pheromones employed by the bark beetle Ips pini (Say). In natural populations, we quantified fitness surfaces for mating success and progeny production. We investigated the effects of paternal pheromone blend on offspring survival by comparing the spatial scales at which pheromone blends and larval mortality agents vary. Males with extreme pheromone blends obtained up to 1.8 times as many mates who each laid equivalent numbers of eggs, producing strong disruptive selection on male pheromone blend. In combination with imperfect assortative mating that continually produces intermediate genotypes, this fitness surface is sufficient to maintain variation in a heritable trait that is strongly linked to fitness. The ultimate explanation for female preference is unknown but could be because of selection for reduced mortality from specialist predators that prefer common prey pheromone blends. Selection is most likely occurring at the scale of small resource patches within pine stands. Selection at coarser scales (pine stands) is unlikely because pheromone blends did not vary among pine stands. Selection at finer scales (within logs) is unlikely because males of similar enantiomeric blends were not aggregated on logs, and male pheromone blend did not affect the spacing to neighboring galleries. This study documents a rare case of diversifying selection in natural populations.     

Coevolutionary interactions between host and parasite genotypes

More than 20 years after Dawkins introduced the concept of "extended phenotype" (i.e. phenotypes of hosts and parasites result from interactions between the two genomes) and although this idea has now reached contemporary textbooks of evolutionary biology, most studies of the evolution of host-parasite systems still focus solely on either the host or the parasite, neglecting the role of the other partner. It is important to consider that host and parasite genotypes share control of the epidemiological parameters of their relationship. Moreover, not only the traits of the infection but also the genetic correlations among these and other traits that determine fitness might be controlled by interactions between host and parasite genotypes.     

Reciprocal interactions between plants and soil in an upland grassland

Through the production of litter, plants with different life history strategies are predicted to both affect and be affected by the properties of soil. Competitive species are expected to increase the fertility of, and have a positive growth feedback with, soil, whereas stress-tolerant species should decrease fertility but show no growth feedback. We maintained monocultures of competitive (Lolium perenne and Agrostis capillaris) and stress-tolerant (Festuca ovina and Nardus stricta) grasses on an unproductive grassland for six years. The Nardus soil developed significantly greater inorganic nitrogen than the Agrostis and Festuca soil, and significantly greater soil moisture content than the Festuca soil. However, there were no differences in organic matter content, phosphate or bulk density between the soil types. In a greenhouse assay, each species was grown in soil cores from the different monocultures as well as natural turf. There were significant differences in growth between plant species and soil types. As expected, L. perenne produced the greatest amount of biomass. However, plants grown on Nardus soil were twice as large and had a 21% lower root allocation than plants grown on any of the other soil types. Lolium perenne, A. capillaris and F. ovina had significant negative growth feedbacks with their own soil (−0.460, −0.821 and −0.792, respectively) and N. stricta had a significant positive feedback (0.560). This study highlights the difficulties of predicting how plant traits will affect soil properties.