Heavy metal bioaccumulation by the organs of Phragmites australis (common reed) and their potential use as contamination indicators

The concentrations of heavy metals in the roots, rhizomes, stems and leaves of the aquatic macrophyte Phragmites australis (common reed), and in the corresponding water and sediment samples from the mouth area of the Imera Meridionale River (Sicily, Italy), were investigated to ascertain whether plant organs are characterized by differential accumulation, and to test the suitability of the various organs for heavy metal biomonitoring of water and soil. Heavy metals considered were Cd, Cr, Cu, Hg, Mn, Ni, Pb, Zn. Results showed that belowground organs were the primary areas of metal accumulation. In particular, metal concentrations in plant organs decreased in the order of root > rhizome ≥ leaf > stem. All four organs showed significant differences in concentration for Cr, Hg, Mn, Zn, thus suggesting low mobility from roots to rhizomes and to aboveground organs. Although the organs followed different decreasing trends of metal concentration, the trend Mn > Zn > Pb > Cu was found in each plant organ. Mn showed the highest concentrations in all organs whereas the lowest concentrations regarded Cd and Cr in the belowground and aboveground organs, respectively. The toxic threshold was exceeded by Cr in roots, rhizomes and leaves, Mn in roots and leaves, Ni in roots. The highest average concentrations were found as follows: Cd, Hg, Pb, Zn in root, Cr, Mn, Ni in sediment, Cu in water. Positive linear relationships were found between heavy metal concentrations in all plant organs and those in water and sediment, thus indicating the potential use of such organs for pollution monitoring of water and sediment. Advantages of using plant species as biomonitors, especially Phragmites australis, were also discussed.     

Isolation and characterization of a cryptic plasmid from mesophilic aeromonads: potential as a cloning vector

A 2.6 kb covalently closed circular plasmid has been isolated from clinical and environmental isolates of Aeromonas sobria and A. hydrophila. The possibility that the plasmid carries genetic determinants that mediate resistance to a variety of anti-microbial agents has been eliminated. The plasmid is stable at approximately 20-25 copies per chromosome equivalent which, together with its relatively small size and the presence of unique restriction sites, makes it a good candidate for development as a cloning vector.     

Imidazole-based nickel(II) and cobalt(II) coordination complexes for potential use as models for histidine containing metalloproteins

It has been established that small molecule model complexes have been useful in studying more complex biological systems of metalloproteins. Because many metalloproteins have active sites that contain multiple histidine residues bound to a metal center, a series of imidazole-containing scorpionate ligands and the associated Co and Ni complexes have been developed to investigate the bonding parameters of histidine containing active sites. The tris(2-imidazolyl) carbinol (2-TIC, 6) and tris[2-(N-methylimidazolyl)] carbinol (2-^MeTIC, 7) complexes of Ni²⁺ and Co²⁺, namely [Co(2-^MeTIC)₂]Cl₂ (8), [Co(2-^MeTIC)₂](NO₃)₂ (9), [Ni(2-^MeTIC)₂]Cl₂ (10), [Ni(2-^MeTIC)₂](NO₃)₂ (11), [Co(2-TIC)₂](NO₃)₂ (12), and [Ni(2-TIC)₂](NO₃)₂ (13), have been prepared from the reaction of the appropriate ligand and appropriate metal salt in polar solvent. These complexes have been characterized by single crystal X-ray diffraction, spectroscopic techniques, and magnetic susceptibility. In each solid-state structure the metal center in the cation coordinates to three N atoms from two ligands and adopts a pseudo-octahedral coordination geometry. The X-ray characterization of tris[2-(N-methylimidazolyl)] carbinol is also reported.     

Isolation of hydrocarbon-degrading extremely halophilic archaea from an uncontaminated hypersaline pond (Camargue, France)

Little information exists about the ability of halophilic archaea present in hypersaline environments to degrade hydrocarbons. In order to identify the potential actors of hydrocarbon degradation in these environments, enrichment cultures were prepared using samples collected from a shallow crystallizer pond with no known contamination history in Camargue, France, with n-alkanes provided as source of carbon and energy. Five alkane-degrading halophilic archaeal strains were isolated: one (strain MSNC 2) was closely related to Haloarcula and three (strains MSNC 4, MSNC 14, and MSNC 16) to Haloferax. Biodegradation assays showed that depending on the strain, 32 to 95% (0.5 g/l) of heptadecane was degraded after 30 days of incubation at 40°C in 225 g/l NaCl artificial medium. One of the strains (MSNC 14) was also able to degrade phenanthrene. This work clearly shows for the first time the potential role of halophilic archaea belonging to the genera Haloarcula and Haloferax in the degradation of hydrocarbons in both pristine and hydrocarbon-contaminated hypersaline environments.     

Changes in metallothionein concentrations in response to variation in natural factors (salinity, sex, weight) and metal contamination in crabs from a metal-rich estuary

Intermoult male and female crabs Pachygrapsus marmoratus and Carcinus maenas were sampled from three sites between the mouth and 25 km upstream in the Gironde, the most Cd-contaminated estuary in France, in order to study the relative importance of natural factors (salinity, sex, weight) and accumulated metal concentrations on metallothionein (MT) concentrations. In the two species studied, higher metal, total protein and MT concentrations were observed in the hepatopancreas than in the gills. In P. marmoratus, MT concentrations were mainly related to changes in the natural factors even if MT and Zn concentrations were positively correlated in the hepatopancreas whereas in C. maenas, the main relationships were with accumulated metal levels. In the case of the natural factors, the most important ones were weight in gills of both crab species, and salinity changes in both hepatopancreas and gills of P. marmoratus. Cd and Cu concentrations in both organs of the two species were inversely related to salinity. The same observation was found for Zn concentrations in C. maenas but not in P. marmoratus. In the hepatopancreas of both species, the highest total protein concentrations were found in crabs from the site with the highest salinity, whereas there were no such differences in the gills. It seems that changes in MT concentrations are linked more to changes in general protein metabolism than to changes in metal accumulation. Thus it was important to examine the storage of metals in other tissue compartments, particularly the insoluble fraction which includes mineral granules which is known to also contribute to trace metal detoxification in invertebrates. In the gills of the crabs, Zn was present mainly in the insoluble fraction, whereas Cd was nearly equally distributed between soluble and insoluble fractions. In contrast, Cu in the gills and all three metals in the hepatopancreas of both species were mainly cytosolic, but this does not necessarily imply a predominant role for MT since the cytosolic fraction also includes other macromolecules which may be the target binding site for accumulated trace metals.     

Prokaryotic diversity and biogeochemical characteristics of field living and laboratory cultured stromatolites from the hypersaline Laguna Interna,Salar de Atacama (Chile)

Extremophiles - Stromatolites are organo-sedimentary structures found principally in seas and saline lakes that contain sheets of sediments and minerals formed by layers of microbial communities,...     

Metallothionein concentration in sponges (Spongia officinalis) as a biomarker of metal contamination

The synthesis of metallothioneins (MTs) is often induced when organisms are exposed to heavy metals in the field. They are among the major "specific" biomarkers identified to date. With a view to include MTs in biomonitoring programs, the organisms most commonly studied are bivalves. Sponges present most of the characteristics researched in bioindicators of pollution and consequently have been proposed to constitute a "Sponge Watch Program". The detection of large quantities of metals in sponges suggests the existence of detoxification systems and indeed, the presence of metallothionein-like proteins (MTLPs) has been reported in two different species of sponges. In Spongia officinalis, the present study has demonstrated the presence of compounds exhibiting most of the characteristics of MTs: cytosolic, heat-stable, with apparent molecular mass of 4 to 15 kDa and binding (at least) Ag, Cu and Zn. Specimens have been collected along the French Mediterranean coast from three sites differing by their degree of contamination. Relationships between MTLP and metal concentrations have been established. For copper, mercury and zinc, the correlations were significantly positive.     

Isolation of the replication DNA region from a Rhizobium plasmid and examination of its potential as a replicon for Rhizobiaceae cloning vectors

The DNA region essential for replication and stability of a native plasmid (pTM5) from Rhizobium sp. (Hedysarum) has been identified and isolated within a 5.4-kb PstI restriction fragment. The isolation of this region was accomplished by cloning endonuclease-restricted pTM5 DNA into a ColE1-type replicon and selecting the recombinant plasmids containing the pTM5 replicator (pTM5 derivative plasmids) by their ability to replicate in Rhizobium. DNA homology studies revealed that pTM5-like replicons are present in cryptic plasmids from some Rhizobium sp. (Hedysarum) strains but not in plasmids from strains of other Rhizobium species or Agrobacterium tumefaciens. The pTM5 derivative plasmids were able to replicate in Escherichia coli and A. tumefaciens and in a wide range of Rhizobium species. On the basis of stability assays in the absence of antibiotic selective pressure, the pTM5 derivative plasmids were shown to be highly stable in both free-living and symbiotic cells of Rhizobium sp. (Hedysarum). The stability of these plasmids in other species of Rhizobium and in A. tumefaciens varied depending on the host and on the plasmid. Most pTM5 derivative plasmids tested showed significantly higher symbiotic stability than RK2 derivative plasmids pRK290 and pAL618 in Rhizobium sp. (Hedysarum), R. meliloti, and R. leguminosarum by. phaseoli. Consequently, we consider that the constructed pTM5 derivative plasmids are potentially useful as cloning vectors for Rhizobiaceae.     

Isolation of the replication DNA region from a Rhizobium plasmid and examination of its potential as a replicon for Rhizobiaceae cloning vectors

The DNA region essential for replication and stability of a native plasmid (pTM5) from Rhizobium sp. (Hedysarum) has been identified and isolated within a 5.4-kb PstI restriction fragment. The isolation of this region was accomplished by cloning endonuclease-restricted pTM5 DNA into a ColE1-type replicon and selecting the recombinant plasmids containing the pTM5 replicator (pTM5 derivative plasmids) by their ability to replicate in Rhizobium. DNA homology studies revealed that pTM5-like replicons are present in cryptic plasmids from some Rhizobium sp. (Hedysarum) strains but not in plasmids from strains of other Rhizobium species or Agrobacterium tumefaciens. The pTM5 derivative plasmids were able to replicate in Escherichia coli and A. tumefaciens and in a wide range of Rhizobium species. On the basis of stability assays in the absence of antibiotic selective pressure, the pTM5 derivative plasmids were shown to be highly stable in both free-living and symbiotic cells of Rhizobium sp. (Hedysarum). The stability of these plasmids in other species of Rhizobium and in A. tumefaciens varied depending on the host and on the plasmid. Most pTM5 derivative plasmids tested showed significantly higher symbiotic stability than RK2 derivative plasmids pRK290 and pAL618 in Rhizobium sp. (Hedysarum), R. meliloti, and R. leguminosarum bv. phaseoli. Consequently, we consider that the constructed pTM5 derivative plasmids are potentially useful as cloning vectors for Rhizobiaceae.     

Seaweed Alaria esculenta as a biomonitor species of metal contamination in Aughinish Bay (Ireland)

The concentrations of ten metals (As, Cd, Cu, Fe, Hg, K, Na, Pb, Sn and Zn) were monitored in coastal seawater and biomass of the seaweed Alaria esculenta from Aughinish Bay on the West coast of Ireland during March–June 2014 in order to study their temporal variations and assimilation efficiencies and to assess the ecological quality of these ecosystems. Seawater and A. esculenta showed significant temporal variations in their metal concentrations during March–June 2014 and A. esculenta accumulated more efficiently Fe and Zn, but showed low sensitivity to Na and K. On the other hand, A. esculenta showed no active detoxication mechanisms for Cd and Pb, but no saturation point was observed during this work to any metal. Considering metal concentrations bioaccumulated by A. esculenta, the Irish coast of Aughinish Bay was always ecologically classified as “Class I – Unpolluted” during March–June 2014. The significant correlations between seawater and A. esculenta obtained to all metals proved that this seaweed species: (i) is a suitable biomonitor of metal contamination in Irish coasts; (ii) it can be included in the European Environmental Specimen Banks and (iii) it can be used in European Real-Time Environmental Monitoring Networks.     

Isolation of Saccharomyces cerevisiae strains from different food matrices and their preliminary selection for a potential use as probiotics

Aims: To isolate acid‐ and bile‐resistant Saccharomyces cerevisiae strains directly from food samples and to preliminarily select them on the basis of fundamental probiotic properties. Methods and Results: A rapid screening method allowed the isolation and selection of 20 acid‐ and bile‐resistant yeasts from foods, avoiding time‐consuming isolation steps. The strains were characterized for their specific survival in simulated gastric juice and in intestinal fluid after pre‐exposure at low pH. Ten isolates demonstrated a satisfactory survival percentage in intestinal fluid after pre‐exposure to gastric juice and appreciable lipolytic and proteolytic properties, as demonstrated by the API‐ZYM test. By using molecular methods five strains were identified as Saccharomyces cerevisiae, three as Candida spp., one as Candida pararugosa and one as Pichia spp. The Saccharomyces cerevisiae strains showed considerable probiotic properties, achieving a 80< % <90 survival through the simulated gastrointestinal tract, as well as interesting glucosidase activities. Conclusions: The research represents an efficient strategy to select and identify Saccharomyces cerevisiae strains with desirable acid and bile resistances. Significance and Impact of the Study: This paper reports the direct selection of potentially probiotic yeasts from foods and provides indications about the ability of Saccharomyces cerevisiae strains to survive conditions simulating the human gastrointestinal tract.     

Incidence of antibiotic and metal resistance and plasmid Carriage in Aeromonas isolated from brown bullhead (latalurus nebulosus)

G.W. PETTIBONE, J.P. MEAR AND B.M. SAMPSELL. 1996. Seventy-four strains of Aeromonas were isolated from skin, intestine, kidney and liver of 16 brown bullhead ( Ictalurus nebulosus ). All strains demonstrated multiple antibiotic resistance (MAR) with most strains resistant to rifampin (97%), novobiocin (96%) and vancomycin (85%). The minimum inhibitory concentration of eight metals to selected strains of Aeromonas revealed an apparent toxicity of chromium > copper > cadmium > nickel > mercury > zinc > cobalt > lead, based on the percentage of isolates sensitive to each concentration of metal. Plasmid DNA was found in 36% (27) of the isolates and most plasmid-containing strains had multiple plasmids less than 12 kilobase pairs (kbp) in size. No relationship between plasmid content and antibiotic or metal resistance was found. Plasmid incidence in bacteria isolated from five fish indicated that plasmids were more likely to occur in strains isolated from kidney and liver than in strains isolated from skin and intestine.     

Evaluating hybridization as a potential facilitator of successful cogongrass (Imperata cylindrica) invasion in Florida,USA

Interspecific hybridization is cited as one potential mechanism for increased invasiveness, particularly among some grass species. In the southeastern United States, the successful invasion of cogongrass (Imperata cylindrica) has sometimes been attributed to hybridization with the previously naturalized Imperata brasiliensis. This research aimed to determine whether genetic signals are consistent with these two species having experienced interspecific hybridization in Florida (USA), where it has been proposed that such an event facilitated cogongrass invasion across the region. Individuals of invasive I. cylindrica populations (n = 66) were sampled broadly from the state, and I. brasiliensis (n = 63) individuals were sampled from expertly identified and vouchered populations in Miami-Dade County. Genetic analysis utilized amplified fragment length polymorphisms in sampled individuals, and failed to detect significant genetic differentiation between the two species. Analysis of molecular variance partitioned the majority of detected variation within populations (86 %), while only 8 % was significantly partitioned between I. cylindrica and I. brasiliensis (F_ST = 0.135, P < 0.001). Both STRUCTURE analysis and principal coordinates analysis strongly indicated the presence of a single genetic group across the sampled populations. Hybrid analysis furthermore failed to support interspecific hybridization. Florida populations thus are suggested to share genetic parent material(s) and/or have experienced substantial admixture across the state. Therefore, this study suggests Imperata populations in South Florida that are currently considered to be I. brasiliensis are not genetically distinct from I. cylindrica, and regional cogongrass invasion likely was not facilitated by previously postulated interspecific hybridization.     

Isolation of the kanamycin resistance region (Tn2350) of plasmid R1drd-19 as an autonomous replicon.

We have isolated a circular form of Tn2350, an IS1-flanked kanamycin resistance transposon forming part of the plasmid R1drd-19. This circle (pTn2350::9.6 kilobases) contains a single IS1 element and probably arises by recombination between the two directly repeated Is1 sequences of Tn2350. It can be used to transform Escherichia coli to kanamycin resistance. It is capable of autonomous replication but is not maintained stably in dividing cells and segregates under nonselective conditions. Cloning of a segment of pTn2350 on a conditional plasmid vector allowed us to assign the replication functions of this plasmid to a 1.6-kilobase restriction fragment. The plasmid R1drd-19 can thus be considered as a cointegrate between two replicons separated by IS1 sequences.     

Isolation of a low-molecular-weight, multicopy plasmid, pNHK101, from Thermus sp. TK10 and its use as an expression vector for T. thermophilus HB27

We isolated a small multicopy cryptic plasmid, pNHK101, from Thermus sp. TK10 for use as a replicon of a Thermus expression vector. The nucleotide sequence of pNHK101 revealed that this plasmid was 1564bp long, with a total G+C content of 66.8%, which was in agreement with that of Thermus genomic DNA. The sequence did not show any significant similarities to any other plasmids; also, the amino acid sequences of four putative open reading frames, found in the plasmid, did not show strong similarities to those in the databases, except the ORF1, which had very slight similarities to several replication proteins of plasmids from other bacteria. pNHK101 was able to replicate in Thermus thermophilus HB27 with copy number about 80, and was stably maintained at 60 degrees C, but became unstable at 70 degrees C. Based on pNHK101, we constructed a plasmid vector, pKMH052, containing the highly thermostable kanamycin resistance gene as a selective marker. The copy number of pKMH052 decreased to about one-fourth of that of pNHK101, but stability at 60 degrees C did not alter under non-selective conditions. pKMH052 was compatible with pTT8, and interestingly, the presence of pTT8 in the same cells improved the stability of pKMH052 at 70 degrees C. Cloning of the crtB gene of T. thermophilus HB27 encoding phytoene synthase into pKMH052, and introduction into T. thermophilus cells resulted in a 2.8-fold production of carotenoids, indicating the potential use of this plasmid for overexpression of genes from thermophiles and hyperthermophiles.     

A strain of Aspergillus flavus from China shows potential as a biocontrol agent for aflatoxin contamination

Aflatoxins are toxic and carcinogenic secondary metabolites produced by Aspergillus flavus and Aspergillus parasiticus. Strains of A. flavus that are non-aflatoxigenic (i.e., incapable of secreting aflatoxins) have proven effective in controlling contamination by these aflatoxin producing species in the field. In the present study, a non-aflatoxigenic A. flavus strain, GD-3, was isolated from a peanut field in Guangdong Province, China. Polymerase chain reaction (PCR) analysis showed that 12 aflatoxin biosynthesis genes (aflT, pksA, nor-1, fas-2, fas-1, aflR, aflJ, adhA, estA, norA, ver-1 and verA) were deleted in GD-3. Co-inoculation with a toxigenic strain, GD-15, at the ratio of 1:10, 1:1 or 10:1 (GD-3:GD-15), showed that GD-3 was capable of reducing detectable aflatoxin levels on three different substrates. This reduction ranged from 33% to 99% and correlated with competitor ratio. These results demonstrated that GD-3 was successful at reducing aflatoxin contamination and showed promise as a potential agent of biocontrol for local farmers.     

Use of bryological communities as a diagnostic tool of heavy metal soil contamination (Cd,Pb, Zn) in northern France

Correlations between terricolous bryophyte flora and edaphic parameters (pH, organic nitrogen (ON), C/N, Cation Exchange Capacity (CEC), Organic Matter (OM) and Pb, Cd and Zn soil contents) of metalliferous wastes in northern France were performed using statistical analysis (FCA, PCA and FCMA). The significant correlation between the classification based on the bryophyte flora and that based on edaphic variables shows that bryophyte groupings have a strong bioindicative value. More information was obtained by taking into account other parameters such as physiological stages (sterility, fertility, maturation, vitality). Three bryophyte classes were distinguished according to Cd, Pb and Zn soil contents.