Diffusive instabilities in a one-dimensional temperature-dependent model system for a mite predator-prey interaction on fruit trees: dispersal motility and aggregative preytaxis effects

A weakly nonlinear analysis relevant to the formation of one-dimensional spatial patterns generated by diffusive instabilities is performed on a particular interaction-diffusion model for a temperature-dependent predator-prey mite system on fruit trees. The bifurcation from a uniform steady state is of a subcritical nature in a low temperature-low population interval while in a high temperature-high population one there exist temperatures for which it can be supercritical resulting in a family of parallel stripes. The occurrence of such population clumping, caused both by the predator's having a sufficient dispersal advantage and by its strongly stabilizing tendency toward preytactic aggregation lying in some critical range, may help explain the inhomogeneous ecological patterns exhibited by phytophagous arthropods found on uniformly distributed vegetation or on plants grown in monocultures.     

Optical plankton analyser: a flow cytometer for plankton analysis, II: Specifications

An analysing flow cytometer, the optical plankton analyser (OPA), is presented. The instrument is designed for phytoplankton analysis, having a sensitivity comparable with commercially available flow cytometers, but a significantly extended particle size range. Particles of 500 microns in width and over 1,000 microns in length can be analysed. Sample flow rates of up to 55 microliters/s can be used. Also, the dynamic range of the instrument is significantly increased for particles larger than about 5 microns. The optics, hydraulics, and electronics of the instrument are described, including the best form for a low fluid shear cuvette. The new pulse quantification technique we call digital integration is presented. This technique is essential for the instrument to handle both short and very long particles with a large dynamic range. Test measurements demonstrating particle size range and dynamic range are presented. Dynamic ranges of 10,000 and 100,000 were typically observed, measuring field samples with Microcystis aeruginosa colonies, whereas one sample showed a dynamic range of 10(6). A simple method for interpretation of time of flight (TOF) data in terms of particle morphology is presented. The specifications of the instrument are given.     

植物学试题类型综合化的研究

论述了综合型植物学试题的产生原因和命题思路,并以一道考查茎的知识的综合型试题为例,从命题思路、试题形式、答题结果及成绩分布等方面,进行了较为详细地分析和探讨。研究结果表明,将填空题、填图题和绘图题综合成一道试题进行测试,能有效避免死记硬背式答题现象,摆脱应试式学习方法,提高学生综合分析能力。     

Functional and aggregative response of North Sea whiting

The functional response of whiting (Merlangius merlangus L.) to clupeid and gadoid prey was determined from estimates of food intake and prey density at five locations in the North Sea. The intake of most prey types was well described by a type II (decelerating) response, although in some cases a type III (sigmoid) response provided a slightly better fit. Though a saturation level was reached for all types of fish prey, none of the levels corresponded to the maximum digestive capacity of the predator. This was not caused by ingestion of other prey as the amount of other food and fish prey ingested were not negatively correlated. An investigation of the occurrence of fresh fish in the stomachs revealed that fish was ingested almost exclusively during dawn and dusk and the lack of negative correlation between the intake of fish and other prey may thus be a result of the limited time in which fish prey was vulnerable to predation. No aggregative response of the predators was detected towards any of the prey and catches of prey and predators were slightly negatively correlated. There was evidence of an increase in mortality with density at low clupeid densities, but mortality decreased to virtually zero at high densities. Whiting seem therefore unlikely to impose a regulatory effect on their fish prey outside a narrow range of prey densities.     

Optical plankton analyser: a flow cytometer for plankton analysis, I: Design considerations

The design criteria for a flow cytometer (FCM) for the analysis of field samples of phytoplankton are described. The criteria are based on the occurrence of a wide variety of particle sizes in field samples, normally at low concentrations. The instrument should be able to analyse cells and colonies from 0.5 to 500 microns diameter and of over 2,000 microns length. A minimum flow rate of 4 microliters.s-1 was calculated from natural plankton concentrations. Commercially available FCMs are not suited to measure this range of sizes at this rate. Further limitations of standard FCMs are uneven illumination or incomplete processing of long signals. In addition, long filamentous colonies can break into small fragments caused by too high acceleration in the standard flow cuvette. Recognition of these limitations is of importance for the flow cytometry of phytoplankton. The new design was developed to avoid these limitations. A dynamic range 5 to 6 decades could be accomplished by a combination of logarithmic amplifiers, a slit-shaped focal spot, and a pulse integration system that can process long pulses. Multilaser capability to identify different phytoplankton species, a low fluid shear cuvette, and a trigger gate-extension for inhomogeneously fluorescent algal filaments were included in the design.     

Isolation and characterization of cytotoxic, aggregative Citrobacter freundii

Citrobacter freundii is an infrequent but established cause of diarrhea in humans. However, little is known of its genetic diversity and potential for virulence. We analyzed 26 isolates, including 12 from human diarrheal patients, 2 from human fecal samples of unknown diarrheal status, and 12 from animals, insects, and other sources. Pulsed field gel electrophoresis using XbaI allowed us to divide the 26 isolates into 20 pulse types, while multi-locus sequence typing using 7 housekeeping genes allowed us to divide the 26 isolates into 6 sequence types (STs) with the majority belonging to 4 STs. We analyzed adhesion and cytotoxicity to HEp-2 cells in these 26 strains. All were found to adhere to HEp-2 cells. One strain, CF74, which had been isolated from a goat, showed the strongest aggregative adhesion pattern. Lactate dehydrogenase (LDH) released from HEp-2 cells was evaluated as a measure of cytotoxicity, averaging 7.46%. Strain CF74 induced the highest level of LDH, 24.3%, and caused >50% cell rounding, detachment, and death. We named strain CF74 "cytotoxic and aggregative C. freundii." Genome sequencing of CF74 revealed that it had acquired 7 genomic islands, including 2 fimbriae islands and a type VI secretion system island, all of which are potential virulence factors. Our results show that aggregative adherence and cytotoxicity play an important role in the pathogenesis of C. freundii.     

Science and organization in open-sea research: The plankton

Looking forward on this occasion, rather than reviewing the past 100 years, it appears that 100 years hence, we will have to manage the environment worldwide like a global garden. How will the ecological knowledge necessary for sound management be acquired? Drawing especially on concepts about the plankton of the open North Sea and on unresolved issues of understanding, questions will be raised about research direction and organization that will need to be answered long before the next 100 years have passed.     

Estimating predation rates in experimental systems: scale-dependent effects of aggregative behaviour

We studied the effect of arena size on estimates of prey mortality rate in predation experiments. In a laboratory experiment involving two of the dominating benthic species in the northern Baltic Sea, the predacious isopod Saduria entomon , and its main prey, the amphipod Monoporeia affinis , the prey mortality rate increased with container radius. The densities of both predator and prey close to the wall increased with container size. We hypothesised that this scale-dependent coaggregation of predator and prey caused the mortality rates to increase with arena size. We tested the hypothesis with the help of a simple model, by calculating the expected number of prey eaten in containers of different size from experimental data on the distributions of predator and prey within the arenas. A significant relationship between expected and observed numbers eaten supported our hypothesis. As the aggregative response was most pronounced in large arenas, this leads to the counterintuitive conclusion that large containers produced more biased estimates of morality rates than small containers.
To further study the effects of coaggregation we explored a general simulation model where both predator and prey preferred the habitat close to the arena wall. The model predicted a humpshaped relationship between encounter rate and arena size. This suggests that when predators and prey show a scale-dependent tendency to aggregate along arena walls, the most accurate estimates of predation rates may be obtained with very small or very large arenas.     

Double-jump migration and diffusive instability

In order to look into the stability consequences of a particular migration process in which individuals choose to settle, we formulated a continuous-time multi-species multi-patch model in which individuals migrate by one or two instantaneous jumps while making the second jump with a certain probability that possibly depends on the conditions at the end point of the first jump. It turned out that a second jump has some quantitative effects on diffusive instability even when it occurs in the absence of density-dependent mechanisms. When a second jump happens as a natural interspecific response of individuals, and such a response is sufficiently strong, it has crucial effects on diffusive instability: it leads to diffusive instability in the case of competitive interactions, whereas it annihilates diffusive instability in the case of prey-predator interactions. We demonstrated these results in the context of two specific examples.     

Scales of plankton patchiness: biomass versus demography

Analyses of the spatial variability of zooplankton in a 100x100km site in the northern North Sea show that the biomass hasrelatively small-scale but large-amplitude patchiness, whereasthe stage structure of the dominant copepod. Calanus finnwrchicus,is uncorrelated at these scales.     

Climate change and marine plankton

Understanding how climate change will affect the planet is a key issue worldwide. Questions concerning the pace and impacts of climate change are thus central to many ecological and biogeochemical studies, and addressing the consequences of climate change is now high on the list of priorities for funding agencies. Here, we review the interactions between climate change and plankton communities, focusing on systematic changes in plankton community structure, abundance, distribution and phenology over recent decades. We examine the potential socioeconomic impacts of these plankton changes, such as the effects of bottom-up forcing on commercially exploited fish stocks (i.e. plankton as food for fish). We also consider the crucial roles that plankton might have in dictating the future pace of climate change via feedback mechanisms responding to elevated atmospheric CO(2) levels. An important message emerges from this review: ongoing plankton monitoring programmes worldwide will act as sentinels to identify future changes in marine ecosystems.     

Nitrogen and phosphorus in plankton

Summary The total nitrogen and phosphorus content in the plankton of Porto Novo water has been investigated. The total nitrogen content varied from 0.28% to 11.70% depending upon the organisms studied. In the same organism or same group of organisms the peak values were noted during the peak season of that plankton. The phosphorus content in the different planktonic organisms varied from 0.0620% to 0.8025% dry weight. Here also the peak values coincided with a peak population of the organism. During a rich diatom period, the phosphorus content in both water (as phosphate) and the diatoms showed a significant rise. However, with a peak zooplankton season, the phosphate in the water did not show any increase.

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Sommario La quantita di nitrogene e di fosforo contenuta nel Plankton delle acque di Poroto Nuovo è stata studiata.La quantità di nitrogeno varia dal 0.28% al 11.70% a seconda degli organismi studiati. Nello stesso organismo di uno stesso gruppo — i valori massimi furono notati durante la stagione alta di quel Plankton.Il fosforo contenuto nei differenti organismi del plankton varia dal 0.0620% el 0.8025% a secco. Anche qui i massimi valori coincidono colla massima concentrazione degli organismi.Durante un periodo ottimale di diatome, il fosforo contenuto sia nell, acque (come fosfato) e nei diatome, mostrava un significativo aumento. Viceversa con la punta massima del zooplankton, il fosfato nell'acqua non rivelava nessum aumento.

     

Interactions of detrital particulates and plankton

Detrital particulates, i.e. inorganic and non-living organic material of colloidal size and larger, span ten orders of magnitude in size and are ubiquitous in inland waters. Interactions between plankton and detrital particulates are reciprocal. Release of dissolved organics by living organisms enter the particulate size fraction by flocculation on bubbles or adsorption to inorganic particles. Bacteria benefit from attachment to particles and are agents in the aggregation of particulates. Nutrients released by decaying plankton can support phytoplankton growth. Potentially toxic compounds adsorb to particulates and then can enter pelagic food webs or sediment. Material egested by zooplankton contributes to the detrital pool which in turn is a food source for zooplankton.     

Distribution and abundance of coral plankton

High densities of eggs and larvae of scleractinian corals were found in plankton samples after mass, multi-specific spawnings on inshore high island fringing reefs in the central Great Barrier Reef region. Immediately after spawning, vertical stratification was observed with eggs concentrated on the surface. Larvae were found to be distributed vertically and horizontally within 12 hours of spawning. Larval development over the subsequent 6–7 days was associated with an increase in the length/width ratios of larvae and their volumes. Influxes of mature larvae onto the study reef were observed 3–6 days after spawning. The relative success of the sampling in relation to other reports in the literature, and the future for more informed work on the larval ecology of corals are discussed.     

Predation of whiting and haddock on sandeel: aggregative response, competition and diel periodicity

The predation of haddock Melanogrammus aeglefinus and whiting Merlangius merlangus on sandeel Ammodytes marinus was investigated based on intensive sampling [performed with a bottom trawl (GOV) equipped with a small meshed codend cover; sediment samples were taken with a van Veen grab] in a restricted area of c . 15 × 20 nautical miles in the northern North Sea during a 5 day period in July 1996. The analysis of the spatial distribution of predators revealed a pronounced aggregation of whiting in the south‐west part of the area, where sandeel catches were also highest. This pattern was thought to be the result of an aggregative behaviour of whiting. The sandeel concentration most likely reflected a restricted patch of coarse sediment of the preferred grain size for sandeels to bury in. In haddock the aggregation was less obvious. Both predators fed almost exclusively on sandeel in the south‐west part of the area with haddock stomachs containing more sandeel than whiting stomachs. The stomach contents in both predators increased rapidly during the night, indicating that the predators were targeting burying sandeels. This would explain the competitive advantage of the benthivorous haddock.     

Continuous plankton records: seasonal variations in the distribution and abundance of plankton in the North Atlantic Ocean and the North Sea

Charts are presented of the seasonal variations in the distributionof four phytoplankton and five zooplankton taxa in the NorthAtlantic and the North Sea. The main factors determining theseasonal variations appear to be the distribution of the mainoverwintering stocks, the current system and, in some instances,temperature control of the rate of population increase. Informationis presented about the variation with latitude (over the rangefrom 34° N to 65 ° N) of the seasonal regime of theplankton. On the assumption that there is a relationship betweennutrient supply and vertical temperature stratification themain features of this variability can be interpreted. In thesouth (to about 43° N) nutrient limitation plus grazingappear to be dominant, resulting in a bimodal seasonal cycleof phytoplankton. North of about 60° N the system appearsto be limited by the size of the phytoplankton stocks beinggrazed primarily by Calanus Finmarchicus and Euphausiacea. Inan extensive zone, from about 44° N to 60° N, it wouldappear that the spring bloom of phytoplankton is under-exploitedby grazing while in summer the zooplankton graze the daily productionof the phytoplankton, the stocks of which are probably maintainedby in situ nutrient regeneration. The implications, for at leastthis mid-latitude zone, that rates and fluxes of processes,as opposed to density dependent interactions between stocks,play a major role in the dynamics of the seasonal cycle is consistentwith previously reported observations suggesting that physicalenvironmental factors play a major role in determining year-to-yearfluctuations in the abundance of the plankton.     

Structure and characterization of AgfB from Salmonella enteritidis thin aggregative fimbriae

The agfBAC operon of Salmonella enteritidis encodes thin aggregative fimbriae, fibrous, polymeric structures primarily composed of AgfA fimbrins. Although uncharacterized, AgfB shows a 51 % overall amino acid sequence similarity to AgfA. Using AgfB epitope-specific antiserum, AgfB was detected as a minor component of whole, purified fimbriae. Like AgfA, AgfB was released from purified fimbriae by >70 % formic acid, whereupon both AgfA-AgfA and AgfA-AgfB dimers as well as monomers were detected. This suggested that AgfB may form specific, highly stable, structural associations with AgfA in native fimbrial filaments, associations that were weakened in structurally unstable fibers derived from AgfA chimeric fimbrial mutants. Detailed sequence comparisons between AgfA and AgfB showed that AgfB harbored a similar fivefold repeated sequence pattern (x(6)QxGx(2)NxAx(3)Q), and contained structural motifs similar to the parallel beta helix model proposed for AgfA. Molecular modeling of AgfB revealed a 3D structure remarkably similar to that of AgfA, the structures differing principally in the surface disposition of non-conserved, basic, acidic and non-polar residues. Thus AgfB is a fimbrin-like structural homologue of AgfA and an integral, minor component of native thin aggregative fimbrial fibers. AgfB from an agfA deletion strain was detected as a non-fimbrial, SDS-insoluble form in the supernatant and was purified. AgfA from an agfB deletion strain was found in both SDS-soluble and insoluble, non-fimbrial forms. No AgfA-AgfA dimers were detected in the absence of AgfB. Fimbriae formation by intercellular complementation between agfB and agfA deletion strains could not be shown under a variety of conditions, indicating that AgfA and AgfB are not freely diffusible in S. enteritidis. This has important implications on the current assembly hypothesis for thin aggregative fimbriae.     

Evolutionary ecology of communication signals that induce aggregative behaviour

Communication signals inducing aggregative behaviour profoundly affect a variety of ecological interactions, partly because they can be exploited by every member of the foodweb. To develop an evolutionary argument for the use of signals inducing aggregative behaviour in animals, the intricate role of aggregation pheromones in the ecology of Drosophila is discussed as a case study. Costs and benefits for the use of aggregation pheromone depend largely on the local characteristics of the environment, they involve various multitrophic interactions, and payoffs and penalties are density dependent. Plasticity in the use of pheromone is predicted and indeed found. For every ecological system, informational cues accompany food web interactions, and this affects the optimal strategy for individuals in their release of and response to such cues.