Synthesis of trialkyl[60]fullerene C60(CH2SiMe3)3H and its potassium and rhodium(I) complexes

The reaction of [60]fullerene with Me₃SiCH₂MgCl in 1,2-Cl₂C₆H₄/THF (1/1) under dry air afforded a bis-alkyl adduct, C₆₀(CH₂SiMe₃)₂ (1), in 54% yield. Treatment of 1 with Me₃SiCH₂MgCl in THF under argon then afforded a trialkyl[60]fullerene, C₆₀(CH₂SiMe₃)₃H (2), in 37% yield. Further treatment of 2 with KO^tBu gave a potassium salt, [K(thf)_n][C₆₀(CH₂SiMe₃)₃] (3), which was then converted to a C_s-symmetric Rh(I) complex, Rh[η⁵-C₆₀(CH₂SiMe₃)₃](1,5-cyclooctadiene) (4), in 91% yield.     

Standardization of seed storage conditions in chilgoza pine (Pinus gerardiana Wall.): an endangered pine of Hind Kush Himalaya

The seeds of chilgoza pine (Pinus gerardiana) show moderate germination and not retain better germinability under normal ambient storage. In the present study, five storage containers [polythene bags (C₁), plastic jars (C₂), canvas bags (C₃), earthen pots (C₄) and tin boxes (C₅)] and four temperature regimes (19–22 °C) (room temperature, T₁), 0 ± 1 °C (T₂), ?4 ± 1 °C (T₃) and 4 ± 1 °C (T₄) were tested and the suitable seed storage conditions of chilgoza pine to retain viability were standardized. The storage devices preserve and retain viability trend of C₄ > C₃ > C₁ > C₂ > C₅ and T₂ > T₃ > T₄ > T₁ in the species throughout the storage period. However, the interaction treatment (C₄T₂) of earthen pots under 0 ± 1 °C temperature regime maintained significantly (P < 0.05) maximum germinability after 9 months (58.3 %) followed by C₃T₂ and C₄T₃ (47.5 %) as compared to other storage conditions. Notably, a sharp decline in germinability was recorded in seeds stored in tin boxes placed at room temperature. The implementation of these results for conservation management, especially nursery development and sustainable utilization of P. gerardiana in Himalayan region, has been suggested.     

Design and synthesis of a luminescent iridium complex-peptide hybrid (IPH) that detects cancer cells and induces their apoptosis

Tumor necrosis factor related apoptosis inducing ligand (TRAIL) triggers the cell-extrinsic apoptosis pathway by complexation with its signaling receptors such as death receptors (DR4 and DR5). TRAIL is a C₃-symmetric type II transmembrane protein, consists of three monomeric units. Cyclometalated iridium(III) complexes such as fac-Ir(tpy)₃ (tpy?=?2-(4-tolyl)pyridine) also possess a C₃-symmetric structure and are known to have excellent luminescence properties. In this study, we report on the design and synthesis of a C₃-symmetric and luminescent Ir complex-peptide hybrid (IPH), which contains a cyclic peptide that had been reported to bind to death receptor (DR5). The results of MTT assay of Jurkat, K562 and Molt-4 cells with IPH and co-staining experiments with IPH and an anti-DR5 antibody indicate that IPH binds to DR5 and induces apoptosis in a manner parallel to the DR5 expression level. Mechanistic studies of cell death suggest that apoptosis and necrosis-like cell death are differentiated by the position of the hydrophilic part that connects Ir complex and the peptide units. These findings suggest that IPHs could be a promising tool for controlling apoptosis and necrosis by activation of the extra-and intracellular cell death pathway and to develop new anticancer drugs that detect cancer cells and induce their cell death.     

Synthesis of poly(ε-caprolactone) by an immobilized lipase coated with ionic liquids in a solvent-free condition

Polycaprolactone (PCL) was synthesized by ring-opening polymerization of ε-caprolactone through two different enzymatic processes. The lipase from Candida antarctica B, immobilized on macroporous acrylic acid beads, was employed either untreated or coated with small amounts of ionic liquids (ILs). Monocationic ionic liquids, [C _n MIm][NTf₂] (n = 2, 6, 12), as well as a dicationic ionic liquid, ([C₄(C₆Im)₂][NTf₂]₂), were used to coat the immobilized lipase and also as the reaction medium. In both methods, the polarity, anion of the ILs concentration and viscosity strongly influenced the reaction. Coating the immobilized enzyme with ILs improved catalytic activity and less ILs was required to produce PCL with a higher molecular weight and reaction yield. At 60 °C and ILs/Novozyme-435 coating ratio of 3:1 (w/w) for 48 h, the highest M _w and reaction yield of PCL were 35,600 g/mol and 62 % in the case of [C₁₂MIm][NTf₂], while the M _w and reaction yield of PCL was 20,300 g/mol and 54 % with [C₁₂MIm][NTf₂] and catalyzed by untreated lipase.     

Elevated [CO2] and growth temperature have a small positive effect on photosynthetic thermotolerance of Pinus taeda seedlings

Key message

Growth temperature had little effect on the response of net photosynthesis to high temperatures (up to 47 °C). On the other hand, elevated [CO ₂ ] increased net photosynthesis at high temperatures.

Abstract

We investigated whether Pinus taeda seedlings grown under elevated CO₂-concentration ([CO₂]) and temperature would be able to maintain positive net photosynthesis (A _net) longer than seedlings grown under ambient conditions when exposed to temperatures up to 47 °C. Additionally, we investigated whether a locally applied temperature increase would yield the same short-term gas exchange response to temperatures up to 47 °C as a naturally occurring latitudinal temperature increase of equal magnitude. Growth conditions were applied for 7 months (February to August) in treatment chambers constructed at two sites in the native range of P. taeda in the southern US. The sites were located 300 km apart along a north–south axis with a natural temperature difference of 2.1 °C. Seedlings were grown under ambient temperature and [CO₂] conditions at both sites. At the northern site, we also applied a temperature increase of 2 °C (T _E), ensuring that this treatment equalled the mean temperature at the southern site. Additionally, at the northern site, we applied a treatment of elevated [CO₂] (C _E). Gas exchange was measured on all plants in walk-in environmentally controlled chambers. Under C _E, there was no difference in A _net of seedlings grown in ambient or ambient +2 °C temperatures at any measurement temperature, while differences were present under ambient [CO₂]. Furthermore, A _net was higher under C _E than under ambient [CO₂]. At 47 °C, A _net was negative in all seedlings except those in the C _E and ambient temperature treatment combination. Seedlings at the northern site in the T _E treatment showed no significant differences in A _net compared with seedlings grown at ambient temperature at the southern site, indicating that the plants responded equally to a manipulated temperature increase and a latitudinal increase in temperature. Our results suggest that elevated [CO₂] increases photosynthetic thermotolerance at high temperature (>41 °C), but this effect diminishes as temperature increases further. Temperature manipulations could provide accurate information on the effect of latitudinal differences in temperature on leaf gas exchange of P. taeda.     

Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax carolinensis sp. nov.

Four bacterial strains identified as members of the Acidovorax genus were isolated from two geographically distinct but similarly contaminated soils in North Carolina, USA, characterized, and their genomes sequenced. Their 16S rRNA genes were highly similar to those previously recovered during stable-isotope probing (SIP) of one of the soils with the polycyclic aromatic hydrocarbon (PAH) phenanthrene. Heterotrophic growth of all strains occurred with a number of organic acids, as well as phenanthrene, but no other tested PAHs. Optimal growth occurred aerobically under mesophilic temperature, neutral pH, and low salinity conditions. Predominant fatty acids were C_16:1ω7c/C_16:1ω6c, C_16:0, and C_18:1ω7c, and were consistent with the genus. Genomic G + C contents ranged from 63.6 to 64.2%. A combination of whole genome comparisons and physiological analyses indicated that these four strains likely represent a single species within the Acidovorax genus. Chromosomal genes for phenanthrene degradation to phthalate were nearly identical to highly conserved regions in phenanthrene-degrading Delftia, Burkholderia, Alcaligenes, and Massilia species in regions flanked by transposable or extrachromosomal elements. The lower degradation pathway for phenanthrene metabolism was inferred by comparisons to described genes and proteins. The novel species Acidovorax carolinensis sp. nov. is proposed, comprising the four strains described in this study with strain NA3^T as the type strain (=LMG 30136, =DSM 105008).     

Energy transfer in purple bacterial photosynthetic units from cells grown in various light intensities

Three photosynthetic membranes, called intra-cytoplasmic membranes (ICMs), from wild-type and the ?pucBA_abce mutant of the purple phototrophic bacterium Rps. palustris were investigated using optical spectroscopy. The ICMs contain identical light-harvesting complex 1–reaction centers (LH1–RC) but have various spectral forms of light-harvesting complex 2 (LH2). Spectroscopic studies involving steady-state absorption, fluorescence, and femtosecond time-resolved absorption at room temperature and at 77 K focused on inter-protein excitation energy transfer. The studies investigated how energy transfer is affected by altered spectral features of the LH2 complexes as those develop under growth at different light conditions. The study shows that LH1 → LH2 excitation energy transfer is strongly affected if the LH2 complex alters its spectroscopic signature. The LH1 → LH2 excitation energy transfer rate modeled with the Förster mechanism and kinetic simulations of transient absorption of the ICMs demonstrated that the transfer rate will be 2–3 times larger for ICMs accumulating LH2 complexes with the classical B800–850 spectral signature (grown in high light) compared to the ICMs from the same strain grown in low light. For the ICMs from the ?pucBA_abce mutant, in which the B850 band of the LH2 complex is blue-shifted and almost degenerate with the B800 band, the LH1 → LH2 excitation energy transfer was not observed nor predicted by calculations.     

Isolation,identification, and performance studies of a novel paraffin-degrading bacterium of <Emphasis Type="Italic">Gordonia amicalis</Emphasis> LH3

In this study, we describe the isolation and identification of a novel long-chain n-alkane degrading strain, Gordonia amicalis LH3. Under aerobic conditions, it utilized approximately 18.0% of paraffin (2% w/v) after 10 day of incubation, and the paraffin compositions of C₁₈∼C₂₄ alkalines were utilized preferentially. Under anaerobic conditions, paraffin utilization was approximately 1/8 that seen under aerobic conditions, and the compositions of C₃₄ and C₃₆ alkalines were utilized preferentially. The effects of salinity, temperature, and biosurfactants on paraffin degradation were also evaluated. The strain was also demonstrated to grow on oil, and decreased oil viscosity by 44.7% and degraded oil by 10.4% under aerobic conditions. Our results indicated that G. amicalis LH3 has potential applications in paraffin control, microbial enhanced oil recovery (MEOR), and the bioremediation of hydrocarbon-polluted environments.     

Identification of Microbial Communities in Open and Closed Circuit Bioelectrochemical MBRs by High-Throughput 454 Pyrosequencing

Two bioelectrochemical membrane bioreactors (MBRs) developed by integrating microbial fuel cell and MBR technology were operated under closed-circuit and open-circuit modes, and high-throughput 454 pyrosequencing was used to investigate the effects of the power generation on the microbial community of bio-anode and bio-cathode. Microbes on the anode under open-circuit operation (A_O) were enriched and highly diverse when compared to those on the anode under closed-circuit operation (A_C). However, among the cathodes the closed-circuit mode (C_C) had richer and more diverse microbial community compared to the cathode under open-circuit mode (C_O). On the anodes A_O and A_C, Proteobacteria and Bacteroidetes were the dominant phyla, while Firmicutes was enriched only on A_C. Deltaproteobacteria affiliated to Proteobacteria were also more abundant on A_C than A_O. Furthermore, the relative abundance of Desulfuromonas, which are well-known electrogenic bacteria, were much higher on A_C (10.2%) when compared to A_O (0.11%), indicating that closed-circuit operation was more conducive for the growth of electrogenic bacteria on the anodes. On the cathodes, Protebacteria was robust on C_C while Bacteroidetes was more abundant on C_O. Rhodobacter and Hydrogenophaga were also enriched on C_C than C_O, suggesting that these genera play a role in electron transfer from the cathode surface to the terminal electron acceptors in the bioelectrochemical MBR under closed-circuit operation.     

Type I and II β-turns prediction using NMR chemical shifts

A method for predicting type I and II β-turns using nuclear magnetic resonance (NMR) chemical shifts is proposed. Isolated β-turn chemical-shift data were collected from 1,798 protein chains. One-dimensional statistical analyses on chemical-shift data of three classes β-turn (type I, II, and VIII) showed different distributions at four positions, (i) to (i + 3). Considering the central two residues of type I β-turns, the mean values of C_ο, C_α, H_N, and N_H chemical shifts were generally (i + 1) > (i + 2). The mean values of C_β and H_α chemical shifts were (i + 1) < (i + 2). The distributions of the central two residues in type II and VIII β-turns were also distinguishable by trends of chemical shift values. Two-dimensional cluster analyses on chemical-shift data show positional distributions more clearly. Based on these propensities of chemical shift classified as a function of position, rules were derived using scoring matrices for four consecutive residues to predict type I and II β-turns. The proposed method achieves an overall prediction accuracy of 83.2 and 84.2 % with the Matthews correlation coefficient values of 0.317 and 0.632 for type I and II β-turns, indicating that its higher accuracy for type II turn prediction. The results show that it is feasible to use NMR chemical shifts to predict the β-turn types in proteins. The proposed method can be incorporated into other chemical-shift based protein secondary structure prediction methods.     

Enzymatic synthesis of poly(ε-caprolactone) in monocationic and dicationic ionic liquids

Enzymatic polymerization can offer metal-free routes to polymer materials that could be used in biomedical applications. To take advantage of the unique properties of ionic liquids (ILs) for enzyme stability, monocationic ionic liquid (MIL) and dicationic ionic liquid (DIL) were used to promote the ring-opening polymerization of ε-caprolactone (ε-CL) using Candida antarctica lipase B as catalyst. Considering the molecular weight (M _n ) and reaction yield of the resulting polymer (PCL), high density and viscosity of ILs would be good, especially in the case of DIL. With the same total alkyl chain length, the density and viscosity of [C₄(C₆Im)₂][PF₆]₂ were higher than that of [C₁₂MIm][PF₆]. Using a lipase/CL/ILs ratio of 1:20:20 (by wt) for 48 h at 90 °C, the highest M _n and reaction yield of PCL were 26,200 g/mol and 62 % with [C₄(C₆Im)₂][PF₆]₂, while the M _n and reaction yield of PCL obtained in [C₁₂MIm][PF₆] were 11,700 g/mol and 37 %.     

Halomonas cibimaris sp. nov., isolated from jeotgal, a traditional Korean fermented seafood

Two moderately halophilic, facultatively aerobic, motile bacteria with flagella, designated strains 10-C-3^T and 30-C-3, were isolated from jeotgal, a traditional Korean fermented seafood. Cells of the strains were observed to be ovoid-rods showing catalase- and oxidase-positive reactions and production of creamy-pink pigments. Growth of strain 10-C-3^T was observed at 15–35 °C (optimum, 25–30 °C), at pH 5.5–9.0 (optimum, pH 7.0–7.5), and in the presence of 3–15 % (w/v) salts (optimum: 5–10 %). The two strains were found to contain C_18:1 ω7c, C_16:0, summed feature 3 (as defined by the MIDI system, comprising C_16:1 ω7c and/or C_16:1 ω6c), and C_12:0 3-OH as the major cellular fatty acids. The G+C contents of the genomic DNA of strains 10-C-3^T and 30-C-3 were determined to be 63.2 and 63.1 mol%, respectively and the respiratory quinone detected was ubiquinone 9 (Q-9) only. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strains 10-C-3^Tand 30-C-3 formed a distinct phyletic lineage within the genus Halomonas and are most closely related to Halomonas fontilapidosi 5CR^T with 95.2 % of 16S rRNA sequence similarity. Strains 10-C-3^Tand 30-C-3 shared 99.2 % of 16S rRNA gene sequence similarity and their DNA–DNA relatedness value was 96.6 ± 0.9 %. On the basis of phenotypic, chemotaxonomic and molecular features, strains 10-C-3^Tand 30-C-3 represent a novel species of the genus Halomonas, for which the name Halomonas cibimaris sp. nov. is proposed. The type strain is 10-C-3^T (= KACC 14932^T = JCM 16914^T).     

Improvement of trans-sialylation versus hydrolysis activity of an engineered sialidase from Trypanosoma rangeli by use of co-solvents

Biocatalytic trans-sialylation is relevant for the design of biomimetic oligosaccharides such as human milk oligosaccharides. t-Butanol and ionic liquids, EAN (ethylammonium nitrate), [MMIm][MeSO₄] (1,3-dimethylimidazolium methyl sulfate), and [C₂OHMIm][PF₆] (1-(2-hydroxyethyl)-3-methylimidazolium hexafluorophosphate), were examined as co-solvents for the improvement of the synthesis versus hydrolysis ratio in the trans-sialylation of lactose, catalysed by an engineered sialidase from Trypanosoma rangeli. The use of 25 % (v/v) t-butanol as co-solvent significantly increased 3′-sialyllactose production by 40 % from 1.04 ± 0.09 to 1.47 ± 0.01 mM. The synthesis versus hydrolysis ratio increased correspondingly by 1.2-times. 1–2.5 % (v/v) EAN or [C₂OHMIm][PF₆] improved the synthesis versus hydrolysis ratio up to 2.5-times but simultaneously decreased the 3′-sialyllactose yield, probably due to enzyme inactivation caused by the ionic liquid. [MMIm][MeSO₄] had a detrimental effect on the trans-sialylation yield and on the ratio between synthesis and hydrolysis.     

Use of new strains of Rhodobacter sphaeroides and a modified simple culture medium to increase yield and facilitate purification of the reaction centre

A new gene expression system was developed in Rhodobacter sphaeroides, replacing a pRK415-based system used previously. The broad host-range IPTG-inducible plasmid pIND4 was used to create the plasmid pIND4-RC1 for expression of the puhA and pufQBALMX genes, encoding the reaction centre (RC) and light-harvesting complex 1 (LH1) proteins. The strain R. sphaeroides ΔRCLH was used to make a knockout of the rshI restriction endonuclease gene, enabling electroporation of DNA into the bacterium; a subsequent knockout of ppsR was made, creating the strain R. sphaeroides RCx lacking this oxygen-sensing repressor of the photosynthesis gene cluster. Using pIND4-RC1, LH1 levels were increased by a factor of about 8 over pRS1 per cell in cultures grown semi-aerobically. In addition, the ppsR knockout allowed for photosynthetic pigment–protein complex synthesis in the presence of high concentrations of molecular oxygen; here, LH1 levels per cell increased by 20 % when grown under high aeration conditions. A new medium (called RLB) is the E. coli medium LB supplemented with MgCl₂ and CaCl₂, which was found to increase growth rates and final cell culture densities, with an increase of 30 % of LH1 per cell detected in R. sphaeroides RCx(pIND4-RC1) grown in RLB versus LB medium. Furthermore, cell density was about three times greater in RLB compared to semi-aerobic conditions. The combination of all the modifications resulted in an increase of LH1 and RC per mL of culture volume by approximately 35-fold, and a decrease in the length of culture incubation time from about 5 days to ~36 h.     

In vitro photoautotrophic acclimatization,direct transplantation and ex vitro adaptation of rubber tree (<Emphasis Type="Italic">Hevea brasiliensis</Emphasis>)

We investigated the effect of carbon dioxide (CO₂)-ambient (350 µmol CO₂ mol^?1) and CO₂-enriched (1500 µmol CO₂ mol^?1) conditions of in vitro photoautotrophic system on two cultivars, ‘RRIM600’ and ‘RRIT413’ of rubber tree (Hevea brasiliensis) in an acclimatization process of 45 days. Survival percentage of in vitro rubber tree plantlets derived from somatic embryos under ambient CO₂ was better than those under CO₂-enriched conditions, especially in cv. ‘RRIT413’. Subsequently, the survival rate of ex vitro transplanted plantlets was similar to the in vitro plantlets and abnormal morphological characters such as light-green leaves (SPAD), small leaves in cv. ‘RRIT413’ acclimatized under CO₂-enriched conditions were demonstrated 30 days after the plantlets were transferred into the soil. Maximum quantum yield of PSII, photon yield of PSII, stomatal conductance and transpiration rate in cv. ‘RRIT413’ acclimatized under CO₂-enriched conditions were sharply declined by 39.0, 50.6, 47.1 and 45.8%, respectively as compared to those acclimatized under ambient CO₂ conditions. In contrast, the in vitro acclimatized plantlets of cv. ‘RRIM600’ were un-responsive under both ambient- and enriched-CO₂ conditions. In conclusion, genotypic dependent in response to CO₂ enriched conditions in in-vitro acclimatization of rubber tree plantlets was evidently demonstrated as a key result to regulate plant growth and development in ex vitro environments. Interestingly, soluble sugar contents (sucrose, glucose and fructose) were increased after transplanting the plantlets of cv. ‘RRIM600’ acclimatized under CO₂-enriched condition into the soil and thus, can be considered as an adaptive indicator of ex vitro adaptation.     

Cadmium(II) complex formation with glutathione

Complex formation between heavy metal ions and glutathione (GSH) is considered as the initial step in many detoxification processes in living organisms. In this study the structure and coordination between the cadmium(II) ion and GSH were investigated in aqueous solutions (pH 7.5 and 11.0) and in the solid state, using a combination of spectroscopic techniques. The similarity of the Cd K-edge and L₃-edge X-ray absorption spectra of the solid compound [Cd(GS)(GSH)]ClO₄·3H₂O, precipitating at pH 3.0, with the previously studied cysteine compound {Cd(HCys)₂·H₂O}₂·H₃O⁺·ClO₄ ^? corresponds to Cd(S–GS)₃O (dominating) and Cd(S–GS)₄ four-coordination within oligomeric complexes with mean bond distances of 2.51 ± 0.02 Å for Cd–S and 2.24 ± 0.04 Å for Cd–O. For cadmium(II) solutions (C _Cd(II) ~ 0.05 M) at pH 7.5 with moderate excess of GSH (C _GSH/C _Cd(II) = 3.0–5.0), a mix of Cd(S–GS)₃O (dominating) and Cd(S–GS)₄ species is consistent with the broad ¹¹³Cd NMR resonances in the range 632–658 ppm. In alkaline solutions (pH 11.0 and C _GSH/C _Cd(II) = 2.0 or 3.0), two distinct peaks at 322 and 674 ppm are obtained. The first peak indicates six-coordinated mononuclear and dinuclear complexes with CdS₂N₂(N/O)₂ and CdSN₃O₂ coordination in fast exchange, whereas the second corresponds to Cd(S–GS)₄ sites. At high ligand excess the tetrathiolate complex, Cd(S–GS)₄, characterized by a sharp δ(¹¹³Cd) NMR signal at 677 ppm, predominates. The average Cd–S distance, obtained from the X-ray absorption spectra, varied within a narrow range, 2.49–2.53 Å, for all solutions (pH 7.5 and 11.0) regardless of the coordination geometry.     

Synthesis and conformation of cyclic hexapeptide cyclo(Pro-Sar-Sar)2

A cyclic hexapeptide, cyclo(Pro-Sar-Sar)₂, which consists of N-substituted amino acids only was synthesized, and its solution conformation was investigated by n.m.r. spectroscopy. Seven different C₂-symmetric conformations were detected, which were distinguishable from each other on the n.m.r. time scale. This is due to the cis/trans isomerization of N-substituted peptide bonds. Allowed C₂-symmetric conformations were computed on the basis of a hard-sphere model. Some conformations detected in n.m.r. spectra were not allowed in the calculation. This disagreement suggests that some asymmetric conformations with regard to the single bond rotation are averaged out due to a rapid rotation on the n.m.r. time scale. These points indicate that the molecule of cyclo (Pro-Sar-Sar)₂ is very flexible     

Assembly of photosynthetic apparatus in Rhodobacter sphaeroides as revealed by functional assessments at different growth phases and in synchronized and greening cells

The development of photosynthetic membranes of intact cells of Rhodobacter sphaeroides was tracked by light-induced absorption spectroscopy and induction and relaxation of the bacteriochlorophyll fluorescence. Changes in membrane structure were induced by three methods: synchronization of cell growth, adjustment of different growth phases and transfer from aerobic to anaerobic conditions (greening) of the bacteria. While the production of the bacteriochlorophyll and carotenoid pigments and the activation of light harvesting and reaction center complexes showed cell-cycle independent and continuous increase with characteristic lag phases, the accumulation of phospholipids and membrane potential (electrochromism) exhibited stepwise increase controlled by cell division. Cells in the stationary phase of growth demonstrated closer packing and tighter energetic coupling of the photosynthetic units (PSU) than in their early logarithmic stage. The greening resulted in rapid (within 0–4 h) induction of BChl synthesis accompanied with a dominating role for the peripheral light harvesting system (up to LH2/LH1 ~2.5), significantly increased rate (~7·10⁴ s^?1) and yield (F _v/F _max ~0.7) of photochemistry and modest (~2.5-fold) decrease of the rate of electron transfer (~1.5·10⁴ s^?1). The results are discussed in frame of a model of sequential assembly of the PSU with emphasis on crowding the LH2 complexes resulting in an increase of the connectivity and yield of light capture on the one hand and increase of hindrance to diffusion of mobile redox agents on the other hand.     

Species-specific differences in temporal and spatial variation in δ13C of plant carbon pools and dark-respired CO2 under changing environmental conditions

Stable carbon isotope signatures are often used as tracers for environmentally driven changes in photosynthetic δ¹³C discrimination. However, carbon isotope signatures downstream from carboxylation by Rubisco are altered within metabolic pathways, transport and respiratory processes, leading to differences in δ¹³C between carbon pools along the plant axis and in respired CO₂. Little is known about the within-plant variation in δ¹³C under different environmental conditions or between species. We analyzed spatial, diurnal, and environmental variations in δ¹³C of water soluble organic matter (δ¹³C_WSOM) of leaves, phloem and roots, as well as dark-respired δ¹³CO₂ (δ¹³C_res) in leaves and roots. We selected distinct light environments (forest understory and an open area), seasons (Mediterranean spring and summer drought) and three functionally distinct understory species (two native shrubs—Halimium halimifolium and Rosmarinus officinalis—and a woody invader—Acacia longifolia). Spatial patterns in δ¹³C_WSOM along the plant vertical axis and between respired δ¹³CO₂ and its putative substrate were clearly species specific and the most δ¹³C-enriched and depleted values were found in δ¹³C of leaf dark-respired CO₂ and phloem sugars, ~?15 and ~?33 ‰, respectively. Comparisons between study sites and seasons revealed that spatial and diurnal patterns were influenced by environmental conditions. Within a species, phloem δ¹³C_WSOM and δ¹³C_res varied by up to 4 ‰ between seasons and sites. Thus, careful characterization of the magnitude and environmental dependence of apparent post-carboxylation fractionation is needed when using δ¹³C signatures to trace changes in photosynthetic discrimination.     

Impact of flooding and drought conditions on the emission of volatile organic compounds of Quercus robur and Prunus serotina

We conducted measurements with oak (Quercus robur L.) and black cherry (Prunus serotina Ehrh.) seedlings to investigate their volatile organic compound (VOC) emission behavior to flooding and drought conditions. A novel cuvette enclosure approach was applied on 18 individuals and emission rates were derived using proton transfer reaction-mass spectrometry (PTR-MS) and gas chromatography–mass spectrometry (GC–MS) techniques. Complementary chlorophyll fluorescence and CO₂ uptake measurements were performed for all of the samples. Q. robur seedlings remained unaffected by flood. On the contrary, P. serotina seedlings reduced their chlorophyll fluorescence yield by 34.5 ± 4.1 % and their CO₂ uptake by 67.5 ± 10.5 %. These observations along with the highest acetaldehyde emissions recorded indicate strong susceptibility to water stress. Drought had a similar impact on both species that reduced chlorophyll fluorescence yield, CO₂ uptake, and the emission rates of most VOC. Nevertheless, isoprene was found to be emitted more than 20 times stronger by Q. robur seedlings under all treatments. In general, most VOC emissions increased with soil water availability displaying an exponential trend for acetaldehyde and methanol and a linear one for the sum of mono- and sesquiterpenes. Only methyl salicylate was released about two times stronger from oaks under drought conditions in comparison to wet conditions. Considering their VOC emission behavior, Q. robur seedlings appear to tolerate flood much better than P. serotina and thus it is likely to have a competing advantage under these conditions.