CH2 domain orientation of human immunoglobulin G in solution: Structural comparison of glycosylated and aglycosylated Fc regions using small-angle X-ray scattering

The N-linked glycan in immunoglobulin G is critical for the stability and function of the crystallizable fragment (Fc) region. Alteration of these protein properties upon the removal of the N-linked glycan has often been explained by the alteration of the C_H2 domain orientation in the Fc region. To confirm this hypothesis, we examined the small-angle X-ray scattering (SAXS) profile of the glycosylated Fc region (gFc) and aglycosylated Fc region (aFc) in solution. Conformational characteristics of the C_H2 domain orientation were validated by comparison with SAXS profiles theoretically calculated from multiple crystal structures of the Fc region with different C_H2 domain orientations. The reduced chi-square values from the fitting analyses of gFc and aFc associated with the degree of openness or closure of each crystal structure, as determined from the first principal component that partially governed the variation of the C_H2 domain orientation extracted by a singular value decomposition analysis. For both gFc and aFc, the best-fitted SAXS profiles corresponded to ones calculated based on the crystal structure of gFc that formed a “semi-closed” C_H2 domain orientation. Collectively, the data indicated that the removal of the N-linked glycan only negligibly affected the C_H2 domain orientation in solution. These findings will guide the development of methodology for the production of highly refined functional Fc variants.     

Mercaptoheterocyclic ligands grafted on a poly(ethylene vinyl alcohol) membrane for the purification of immunoglobulin G in a salt independent thiophilic chromatography

In this study, we attempted a limited combinatorial approach for designing affinity ligands based on mercaptoheterocyclic components. The template, divinyl sulfone structure (DVS), which was grafted on poly(ethylene vinyl alcohol) (PEVA) hollow fiber membrane, has served for the tethering of different heterocyclic compounds as pyridine, imidazole, purine and pyrimidine rings. Their ability to adsorb specifically IgG in a salt independent manner out of pure IgG solution, mixture of IgG/albumin and human plasma was demonstrated. Mercapto methyl imidazole (MMI) has shown the best adsorption of IgG in terms of binding capacity. No subclass discrimination was observed on all tested ligands except for mercapto methyl pyrimidine where the major IgG subclass adsorbed was IgG3. MMI gave an IgG binding capacity of 100 microg/cm2 of hollow fiber membrane surface area.     

A substrate-unspecified glycosylation reaction promoted by copper(II) trifluoromethanesulfonate in benzotrifluoride

A glycosylation reaction induced by copper(II) trifluoromethanesulfonate is described. Using benzotrifluoride as the reaction solvent, five kinds of glycosyl donors, a glucosyl chloride, a fluoride, a trichloroacetimidate, a 1-O-acetyl compound, and a lactol were activated to give the corresponding glucosides.     

A mixed-valence Cu(I)-Cu(II) and metal-metal bond containing coordination polymer obtained from an in situ oxidation reaction route

A new mixed-valence copper coordination polymer with copper-copper metal bonds in a two-dimensional network was generated from an in situ oxidation reaction route under hydrothermal conditions. The synthesis of this coordination polymer demonstrated that the novel compounds that may not be accessible using the known methods could be synthesized via an oxidation reaction route. The reaction conditions are mild enough to keep the building blocks intact during the oxidation and self-assembly process under hydrothermal conditions.     

Phenoxyl-copper(II) complexes: models for the active site of galactose oxidase

 The reaction of the macrocycles 1,4,7-tris (3,5-di-tert-butyl-2-hydroxy-benzyl)-1,4,7-triazacyclononane, L¹H₃, or 1,4,7-tris(3-tert-butyl-5-methoxy-2-hydroxy-benzyl)-1,4,7-triazacyclononane, L²H₃, with Cu(ClO₄)₂·6H₂O in methanol (in the presence of Et₃N) affords the green complexes [Cu^II(L¹H)] (1), [Cu^II(L²H)]·CH₃OH (2) and (in the presence of HClO₄) [Cu^II(L¹H₂)](ClO₄) (3) and [Cu^II(L²H₂)] (ClO₄) (4). The Cu^II ions in these complexes are five-coordinate (square-base pyramidal), and each contains a dangling, uncoordinated pendent arm (phenol). Complexes 1 and 2 contain two equatorially coordinated phenolato ligands, whereas in 3 and 4 one of these is protonated, affording a coordinated phenol. Electrochemically, these complexes can be oxidized by one electron, generating the phenoxyl-copper(II) species [Cu^II(L¹H)]^+ ·, [Cu(L²H)]^+ ·, [Cu^II(L¹H₂)]^2+ ·, and [Cu^II(L²H₂)]^2+ ·, all of which are EPR-silent. These species are excellent models for the active form of the enzyme galactose oxidase (GO). Their spectroscopic features (UV-VIS, resonance Raman) are very similar to those reported for GO and unambiguously show that the complexes are phenoxyl-copper(II) rather than phenolato-copper(III) species. Received: 10 February 1997 / Accepted: 7 April 1997     

A dye-binding assay for measurement of the binding of Cu(II) to proteins

We analysed the theory of the coupled equilibria between a metal ion, a metal ion-binding dye and a metal ion-binding protein in order to develop a procedure for estimating the apparent affinity constant of a metal ion:protein complex. This can be done by analysing from measurements of the change in the concentration of the metal ion:dye complex with variation in the concentration of either the metal ion or the protein. Using experimentally determined values for the affinity constant of Cu(II) for the dye, 2-(5-bromo-2-pyridylaxo)-5-(N-propyl-N-sulfopropylamino) aniline (5-Br-PSAA), this procedure was used to estimate the apparent affinity constants for formation of Cu(II):transthyretin, yielding values which were in agreement with literature values. An apparent affinity constant for Cu(II) binding to α-synuclein of ∼1 × 10⁹ M⁻¹ was obtained from measurements of tyrosine fluorescence quenching by Cu(II). This value was in good agreement with that obtained using 5-Br-PSAA. Our analysis and data therefore show that measurement of changes in the equilibria between Cu(II) and 5-Br-PSAA by Cu(II)-binding proteins provides a general procedure for estimating the affinities of proteins for Cu(II).     

An integrated system of pyrene and rhodamine-6G for selective colorimetric and fluorometric sensing of mercury(II)

A pyrene and rhodamine-6G functionalized simple chemosensor L is studied toward sensing of metal ions in solution extensively. L shows selective color change from colorless to pink in the presence of Hg²⁺ in acetonitrile and the UV-Vis study shows peak at 525 nm with a ε value of 5.2 × 10⁴ M⁻¹ cm⁻¹ due to selective ring opening of rhodamine spirolactam moiety. The selective sensing of Hg²⁺ by L in the presence of other metal ions and reversible nature of “OFF-ON-OFF” functionality of L by Hg²⁺ and EDTA, respectively, are also established. The fluorescence study of L in the presence of Hg²⁺ shows emission at 550 nm when excited at 525 nm (ring opened rhodamine wavelength) or 340 nm (pyrene wavelength) in dry CH₃CN. Thus L acts as a selective colorimetric and fluorometric probe (dual probe) for the Hg²⁺ in solution. Metal ion sensing ability of L is also carried out in water as well as in aqueous Hepes buffer. These studies suggest that the fluorescence output of L in presence of Hg²⁺ in aqueous environment is apparently due to the generation of acid upon addition of Hg²⁺ salt in water.     

Evaluation of DNA damage in leukocytes of G6PD-deficient Iranian newborns (Mediterranean variant) using comet assay

Glucose-6-phosphate dehydrogenase (G6PD) deficiency is the most common inherited disease, which causes neonatal hemolytic anemia and jaundice. Recent studies of our group showed that the Mediterranean variant of this enzyme (Gd-Md) is the predominant G6PD in Iranian male infants suffering from jaundice; this variant is classified as severe G6PD deficiency. Considering the importance of G6PD reaction and its products NADPH and glutathione (GSH) against oxidative stress, we hypothesized the failure of detoxification of H(2)O(2) in G6PD-deficient white blood cells that could probably induce primary DNA damage. For the evaluation of DNA damage, we analyzed mononuclear leukocytes of 36 males suffering from the Gd-Md deficiency using alkaline single cell gel electrophoresis (SCGE) or comet assay. The level of DNA damage was compared with the level of basal DNA damage in control group represented by healthy male infant donors (of the same age group). Visual scoring was used for the evaluation of DNA damages. The results showed that the mean level of the DNA strand breakage in mononuclear leukocytes of 36 male G6PD-deficient (Gd-Md) infants was significantly higher (P < 0.001) than those observed in the normal lymphocytes. In conclusion, this investigation indicates that the mononuclear leukocytes of the Gd-Md samples may be exposed to DNA damage due to oxidative stress. This is the first report using comet assay for evaluation of DNA damage in severe G6PD deficiency samples.     

Copper(II) promoted imidazolidine ring formation and complexation: A unique reaction course

The reaction of Cu(II) ions with a sodium salt of new Schiff base ligand NaL¹, sodium N-2-methyl pyridine-2-imine benzoate, in alkaline medium produced an imine bond coupled ligand and a novel complex, Na₂[Cu(L³)₂], L³ = 2,5-di(2-benzoic acid)-4-(2-pyridine)-1-(2-methyl-2-pyridine)-imidazolidine. When the reduced form of the sodium salt of the Schiff base ligand, NaL², is employed, a simple hexacoordinated copper(II) complex, [Cu(L²)₂], [L²]⁻ = bis(N-(2-methylpyridine)-2-aminomethylbenzoate), was isolated. The compounds were characterized by spectroscopic methods and the molecular structures of [Cu(L²)₂] and Na₂[Cu(L³)₂] were determined by single-crystal X-ray diffraction methods. Reaction mechanism for the synthesis of, Na₂[Cu(L³)₂], copper(II) promoted imine bond coupling is proposed and discussed. The redox behavior of [Cu(L²)₂] and Na₂[Cu(L³)₂], studied using cyclic voltammetry and electron paramagnetic resonance spectroscopic methods, are also discussed.     

A fluorescent ligand rationally designed to be selective for zinc(II) over larger metal ions. The structures of the zinc(II) and cadmium(II) complexes of N,N-bis(2-methylquinoline)-2-(2-aminoethyl)pyridine

The metal ion coordinating properties of the ligands N,N-bis(2-methylquinoline)-2-(2-aminoethyl)pyridine (DQPEA) and N,N-bis(2-methylquinoline)-2-(2-aminomethyl)pyridine (DQPMA) are presented. DQPEA and DQPMA differ only in that DQPEA forms six-membered chelate rings that involve the pyridyl group, whereas DQPMA forms analogous five-membered chelate rings.These two ligands illustrate the application of a ligand design principle, which states that increase of chelate ring size in a ligand will result in increase in selectivity for smaller relative to larger metal ions. The formation constants (log K₁) of DQPEA and DQPMA with Ni(II), Cu(II), Zn(II), Cd(II) and Pb(II) are reported. As expected from the applied ligand design principle, small metal ions such as Ni(II) and Zn(II) show increases in log K₁ with DQPEA (six-membered chelate ring) relative to DQPMA (five-membered chelate ring), while large metal ions such as Cd(II) and Pb(II) show decreases in log K₁ when the chelate ring increases in size. In order to further understand the steric origin of the destabilization of complexes of metal ions of differing sizes by the six-membered chelate ring of DQPEA, the structures of [Zn(DQPEA)H₂O](ClO₄)₂ (1) [triclinic, , a = 9.2906(10), b = 10.3943(10), c = 17.3880(18) Å, α = 82.748(7)°, β = 88.519(7)°, γ = 66.957(6)°, Z = 4, R = 0.073] and [Cd(DQPEA)(NO₃)₂] (2) [monoclinic, C2/c, a = 22.160(3), b = 15.9444(18), c = 16.6962(18) Å, β = 119.780(3)°, Z = 8, R = 0.0425] are reported. The Zn in (1) is five-coordinate, with a water molecule completing the coordination sphere. The Cd(II) in (2) is six-coordinate, with two unidentate nitrates coordinated to the Cd. It is found that the bonds to the quinaldine nitrogens in the DQPEA complexes are considerably stretched as compared to those of analogous TPyA (tri(pyridylmethyl)amine) complexes, which effect is attributed to the greater steric crowding in the DQPEA complexes. The structures are analyzed for indications of the origins of the destabilization of the complex of the large Cd(II) ion relative to the smaller Zn(II) ion. A possible cause is the greater distortion of the six-membered chelate ring in (2) than in (1), as evidenced by torsion angles that are further away from the ideal values in (2) than in (1). Fluorescence properties of the DQPMA and DQPEA complexes of Zn(II) and Cd(II) are reported. It is found that the DQPEA complex of Zn(II) has increased fluorescence intensity compared to the DQPMA complex, while for the Cd(II) complex the opposite is found. This is related to the greater strain in the six-membered chelate ring of the Cd(II) DQPEA complex as compared to the Zn(II) complex, with resulting poorer overlap in the Cd-N bond, and hence greater ability to quench the fluorescence in the Cd(II) complex.     

A continuous spectrophotometric assay for Pseudomonas aeruginosa LasA protease (staphylolysin) using a two-stage enzymatic reaction

Pseudomonas aeruginosa LasA protease is a secreted metalloendopeptidase that can lyse Staphylococcus aureus cells by cleaving the pentaglycine bridges of their peptidoglycan. It can also degrade elastin and stimulate shedding of cell-surface proteoglycans, activities implicated in pathogenesis of P. aeruginosa infections. The activity of LasA protease can be assayed spectrophotometrically by following the reduction in turbidity of S. aureus cell suspensions. This assay, however, does not permit kinetic studies and its reproducibility is poor. Here we describe a two-stage enzymatic reaction for the continuous measurement of LasA protease activity using a defined substrate, succinyl-Gly-Gly-Phe-4-nitroanilide, supplemented with Streptomyces griseus aminopeptidase. Cleavage of the Gly-Phe bond by LasA protease is followed by hydrolysis of the product Phe-4-nitroanilide by the aminopeptidase and the rate of release of the chromophore (4-nitroaniline) is measured spectrophotometrically using a 96-well microplate reader. Activity of nanogram amounts of LasA protease could be determined within a few minutes. Furthermore, this assay permitted the determination of Km and kcat values for LasA protease, which were 0.46 mM and 11.8s(-1), respectively. Pseudomonas elastase was also active in the assay. However, it was less effective than LasA protease and its activity was inhibited by phosphoramidon. The assay is highly sensitive and reproducible, providing a convenient tool for further studies of LasA protease function(s) and mechanism of action.     

Toxoplasma gondii: enzyme-linked immunosorbent assay using different fragments of recombinant microneme protein 1 (MIC1) for detection of immunoglobulin G antibodies

Three different fragments of microneme 1 protein termed, r-MIC1ex2, r-MIC1ex34 and r-MIC1 of Toxoplasma gondii, were expressed in Escherichia coli as fusion proteins containing six histidyl residues at N- and C-terminal. After purification by metal affinity chromatography, these recombinant proteins were tested for their usefulness as antigens in an enzyme-linked immunosorbent assay for the detection of immunoglobulin G. Ninety-eight sera from patients with different stages of invasion and 24 sera from seronegative patients were examined. There was no significant difference observed in the antigenicity for human serum samples from patients with acute toxoplasmosis between three recombinant types of MIC1 antigen (96.1% for r-MIC1ex2 antigen and 100% for both r-MIC1ex34 and r-MIC1 proteins). Sera from chronic infections (with low titers of IgG antibody) showed significant lower sensitivity, especially for r-MIC1ex34 and r-MIC1 antigens (75%, 52.7% and 36.1% for r-MIC1ex2, r-MIC1ex34 and r-MIC1, respectively). These results indicate that the strongest antigenic region of the MIC1 is encoding by the second exon of mic1 gene. When r-MIC1ex2 (N-terminal fragment of protein) was combined with MAG1 (matrix antigen) and MIC3 (microneme 3 protein), the sensitivity increased to 88.9%. This result was comparable to an ELISA using a Toxoplasma lysate antigen (TLA) and two combinations of recombinant antigens: M1 (GRA1+GRA7+SAG1) and M2 (P35+SAG2+GRA6) with the sensitivity for serum samples tested 94.4%, 88.9% and 94.4%, respectively.     

A bis(chlorido)-bridged linear-chain Cu(II) compound with 7-azaindole as an axial ligand; synthesis, structure, hydrogen bonding and magnetism

A novel linear bis(chlorido)-bridged Cu(II) compound with the ligand 7-azaindole (abbreviated as Haza) have been synthesized and fully characterized by spectroscopy, EPR and X-ray structure analysis. The geometry around the Cu(II) ion in the compound [Cu-μ-Cl₂(Haza)₂]_n, is distorted octahedral with the basal plane formed by two chloride anions with a Cu-Cl distance of 2.286(1) Å and two nitrogen atoms of two trans-chelating Haza ligands with a Cu-N distance of 2.042(4) Å. The apical positions is formed by two chloride anions of a neighbouring unit at a distance of 3.143(2) Å. The Cu-Cl-Cu angle is 90.09(5)°, while the Cu-Cu distance is 3.8890(8) Å.The EPR powder spectrum appears as rhombic, displaying some extra features which were assigned to the differences in orientation of chains in the lattice, as their intensity appears to decrease on powdering. The magnetic susceptibility measurements, recorded from 5 to 300 K, agree with a very weak antiferromagnetic interaction in a chain with J = −2.6 cm⁻¹.     

A novel type of copper(I)/(II) mixed-valence compound: [Cu(dmp)2][Cu(hfac)3] with dmp=2,9-dimethyl-1,10-phenanthroline and hfac=hexafluoroacetylacetonate

The mixed-valence compound [Cu^I(dmp)₂][Cu^II(hfac)₃] with dmp=2,9-dimethyl-1,10-phenanthroline and hfac⁻=hexafluoroacetylacetonate has been synthesized and structurally characterized by X-ray crystallography. The MV interaction has been examined by emission spectroscopy. The phosphorescence of [Cu^I(dmp)₂]⁺ is completely quenched. It is suggested that this quenching takes place by excited state electron transfer from Cu(I) to Cu(II).     

Kinetics of ingested host immunoglobulin G in hemolymph and whole body homogenates during nymphal development of Dermacentor variabilis and Ixodes scapularis ticks (Acari: Ixodidae)

Patterns in the utilization of host immunoglobulin G (IgG) during nymphal development differed between Dermacentor varibilis (Say) and Ixodes scapularis Say ticks. In unfed nymphs of D. variabilis, host IgG was readily detectable in both hemolymph and whole body homogenates. In unfed nymphs of I. scapularis, host IgG was absent in hemolymph and at very low concentrations in whole body homogenates. Host IgG in unfed nymphs was undoubtedly the remnants of IgG acquired during the larval bloodmeal that persisted through metamorphosis to the nymphal stage. In both tick species, host IgG crossed the midgut into the hemocoel during the latter phases of engorgement. Concentrations of host IgG in I. scapularis declined considerably after replete nymphs molted to the adult stage. In contrast, concentrations of host IgG in D. variabilis remained elevated throughout metamorphosis to the adult stage. When larval D. variabilis were fed on a rat, then 2 months later as nymphs on a rabbit, the rat IgG (“old IgG”) present in unfed nymphs was totally replaced by rabbit IgG (“new IgG”) within 2 d of nymphs attaching to the rabbit. Presumably, the old IgG acquired from a previous bloodmeal was secreted via saliva into the new host. This revised version was published online in July 2006 with corrections to the Cover Date.     

Insight into molecular mechanism underlying the transesterification catalysed by penicillin G amidase (PGA) using a combination protocol of experimental assay and theoretical analysis

Penicillin G amidase (PGA) is one of the most recognised biocatalysts because of its critical application in the antibiotic industry. Herein, the additive effects involved in transesterification catalysed by PGA are explored in detail using a combination of experimental analysis and theoretical modelling. The transesterification ability of PGA is experimentally determined with 17 N-containing compounds as additives, and, on this basis, a series of quantitative structure–activity relationship (QSAR) models are developed from various physicochemical parameters characterising structural variation over the additives. The resulting models exhibit both good stability and predictive power, from which five most important properties that highlight structural basis and reaction mechanism underlying the transesterification are extracted, revealing that the topological property and electrostatic profile of additives exert a significant effect on reaction yield; the charge distribution around additive molecules is the most significant factor controlling reaction yield, and then the topological structure. Furthermore, it is inferred that the additive imidazole might constitute the catalytic triad of Ser, Glu or Asp involved in PGA active site, which appears similar to lipase, rendering PGA with the catalytic ability of transesterfication. The study highlights the potential application of QSAR methodology in the field of enzymatic regulator design.     

Synthesis, spectroscopic properties and X-ray crystal structures of two dinuclear alkoxo-bridged copper(II) compounds with the ligand bis(1-methyl-2-benzimidazolyl) propane. A unique alkoxo-bridged Cu(II) dinuclear compound with an additional bidentate bridging triflate anion

Based on the new ligand bis(1-methyl-2-benzimidazolyl) propane (abbreviated as mtbz) several new copper(II) coordination compounds have been prepared and characterized structurally and spectroscopically. Two representative compounds, i.e. [Cu₂(mtbz)₂(CH₃)₂- (CF₃SO₃)](CF₃SO₃) (1) and [Cu₂(mtbz)₂(CH₃O)₂](ClO₄)₂ (4) were characterized structurally by X-ray diffraction. Crystal data for 1: monoclinic, space group P2₁/c, a=13.6585(5), B=39.981(3), C=20.919(1) Å, β=125.98(1)°, Z=8. Crystal data for 4: monoclinic, space group P2₁/c, a=13.115(2), B=9.523(2), C=17.908(4) Å, β=111.71(1)°, Z=2. Structures 1 and 4 each consist of a dinuclear unit with bridging methoxo groups and one ligand linked to each copper via an N atom. Structure 1 (which consists of two dinuclear, crystallographically independent, but chemically identical units) has the two copper atoms bridged by a triflate anion, providing each copper atom a square-pyramidal coordination, while the copper atoms in structure 4 have an almost a square-planar geometry. The Cu---Cu distances (Å) within the dinuclear units are: 1, 2.9775(13), 2.9751(13); 4, 2.9872(16); the Cu---O---Cu bridging angles (°) are: 1, 101.7(3), 101.7(3), 100.9(3), 102.1(3); 4, 103.2(2). The mid-IR section focused on the vibrations of the triflate anion reveals interesting results concerning the assignments of that anion related to the v_as(S---O) band. Characteristic Cu---O vibrations in the far-IR section were found at 386 and 230 cm⁻¹ for the methoxo-bridged and 454 and 332 cm⁻¹ for the ethoxo-bridged compounds. These dinuclear species are EPR silent, and only a weak signal of monomeric impurities is observed. They also show a diamagnetic behavior below room temperature.     

Investigation of the structural requirements of K-Ras(G12D) selective inhibitory peptide KRpep-2d using alanine scans and cysteine bridging

A structure-activity relationship study of a K-Ras(G12D) selective inhibitory cyclic peptide, KRpep-2d was performed. Alanine scanning of KRpep-2d focusing on the cyclic moiety showed that Leu⁷, Ile⁹, and Asp¹² are the key elements for K-Ras(G12D) selective inhibition of KRpep-2d. The cysteine bridging was also examined to identify the stable analog of KRpep-2d under reductive conditions. As a result, the KRpep-2d analog (12) including mono-methylene bridging showed potent K-Ras(G12D) selective inhibition in both the presence and the absence of dithiothreitol. This means that mono-methylene bridging is an effective strategy to obtain a reduction-resistance analog of parent disulfide cyclic peptides. Peptide 12 inhibited proliferation of K-Ras(G12D)-driven cancer cells significantly. These results gave valuable information for further optimization of KRpep-2d to provide novel anti-cancer drug candidates targeting the K-Ras(G12D) mutant.     

以小鼠检测鸡霍乱G190E_（40）疫苗的效力试验

为检测鸡霍乱Ｇ１９０Ｅ４０疫苗,以该苗的不同剂量接种小鼠,测出其最小免疫量和安全性。并以同法对鸡进行平行试验。之后分别以Ｃ４８—１强毒的最小致死量攻击。比较此法对两种动物的差异。试验结果表明,用小鼠替代鸡检测鸡霍乱苗,即安全,又可降低检测成本,因此本法具有实际应用价值。