Supramolecular assembly driven by hydrogen-bonding and π-π stacking interactions based on copper(II)-terpyridyl complexes

Six 2D and 3D supramolecular complexes [Cu(L1)(O₂CCH₃)₂] · H₂O (1), [Cu₂(L2)₂(μ₂-O₂CCH₃)₂](BF₄)₂ (2), [Cu₂(L1)₂(BDC)(NO₃)₂] · 0.5H₂O (3) [Cu₂(L2)₂(BDC)(NO₃)₂] (4), [Cu₂(L3)₂(BDC)(NO₃)₂] · 0.5H₂O (5) and [Cu₂(L2)₂(BDC)(H₂O)₂](BDC) · 8H₂O (6) (L1 = 4′-(4-pyridyl)-2,2′:6′,2″-terpyridine, L2 = 4′-(2-pyridyl)-2,2′:6′,2″-terpyridine, L3 = 4′-phenyl-2,2′:6′,2″-terpyridine, BDC = 1,4-benzenedicarboxylate), have been prepared and structurally characterized by X-ray diffraction crystallography. In complexes 1, 3, and 4, 1D channels are formed through C-H?O and C-H?N hydrogen-bonding interactions, and further linked into 3D structure via C-H?O and O-H?O interactions. Complex 2 is a 2D layer constructed from intermolecular C-H?F and π-π stacking interactions. In the structure of 6, the BDC²⁻ ions and solvent water molecules form a novel 2D layer containing left- and right-handed helical chains via hydrogen-bonds, and an unusual discrete water octamer is formed within the layer. In 2, 4, 6 and [Ag₂(L2)₂](PF₆)₂ (7) the bonding types of pendent pyridines of L2 depending on the twist about central pyridines are involved in intramolecular (2 and 4), intermolecular (6) or coordination bonds (7) in-twist-order of 5.8°, 3.7°, 28.2° and 38.0°, respectively. Differently, the pendent pyridines of L1 in 1 and 3 form intermolecular hydrogen bonds despite of distinct corresponding twist angles of 25.1° (1) and 42.6°(3). Meanwhile, π-π stacking interactions are present in 1-6 and responsible for the stabilization of these complexes.     

Structures and magnetic property studies of four copper(II) and nickel(II) supramolecular complexes derived from diphenic acid constructed by C-H?π and π-π interactions

Four one-dimensional metal-organic polymers derived from diphenic acid (H₂dpa) were synthesized in the presence of auxiliary ligands, [Cu(dpa)CH₃OH](1), [Ni(dpa)CH₃OH] (2), [Cu(bipy)₂(Hdpa)₂(H₂O)₂] (3) and [Ni(bipy)₂(Hdpa)₂(H₂O)₂] (4) (bipy = 4, 4′-bipyridine). The dinuclear paddle-wheel second building units (SBUs) constructed by four dpa²⁻ ligands in complexes 1 and 2 are linked by dpa²⁻ into double chains, which are connected by C-H?π interactions forming a two-dimensional rhombic porous structure. In complexes 3 and 4, the metal ions are connected by bipy ligands, and the grid-like network was formed with the π-π interactions between the adjacent phenyl rings of Hdpa⁻. For 1 and 2, there are strong antiferromagnetic interactions within Cu-Cu and Ni-Ni dimers. It is also strong antiferromagnetic interactions between the dimmers of Cu₂ in 1, while it is weaker of those of Ni₂ in 2. Weaker antiferromagnetic interactions exist among Cu-Cu and Ni-Ni in 3 and 4, in which bipy is the effective coupling media. Thermally gravimetric analyses and differential thermal analyses indicate that the four complexes are all thermal stable.     

Extended structures sustained by hydrogen bonding and π-π interactions: Synthesis and characterization of Cd(II) complexes with bis(benzimidazolyl) ligands

Two new Cd(II) complexes, {[Cd(C4BIm)Cl₂] · DMF}_n (1) and [Cd(HC4BIm)Cl₃] · 3H₂O (2) (C4BIm = 1,4-bis(benzimidazolyl)butane and HC4BIm = mono-protonated 1,4-bis(benzimidazolyl)butane), have been prepared and characterized spectroscopically and crystallographically. In both complexes, the Cd(II) atom exhibits distorted tetrahedral coordination geometry with CdN₂Cl₂ and CdNCl₃ in 1 and 2, respectively. Complex 1 adopts a racemic structure built up from P- and M-helical [Cd(C4BIm)Cl₂]_n chains, which are alternately linked into two-dimensional network by N-H?Cl hydrogen bonds and further stabilized by the intermolecular π?π stacking. In complexes 2, the HC4BIm is monodentate, coordinating to Cd(II) ion via the unprotonated benzimidazolyl nitrogen donor to form mononuclear [Cd(HC4BIm)Cl₃]. The mononuclear units are linked by N-H?Cl hydrogen bonds to form one-dimensional planar belts, which interact via intermolecular π?π stacking to result in three-dimensional framework.     

Cation-π and π-π stacking interactions allow selective inhibition of butyrylcholinesterase by modified quinine and cinchonidine alkaloids

Scaffold varied quaternized quinine and cinchonidine alkaloid derivatives were evaluated for their selective butyrylcholinesterase (BChE) inhibitory potential. K_i values were between 0.4–260.5 μM (non-competitive inhibition) while corresponding K_ivalues to acetylcholinesterase (AChE) ranged from 7.0–400 μM exhibiting a 250-fold selectivity for BChE.Docking arrangements (GOLD, PLANT) revealed that the extended aromatic moieties and the quaternized nitrogen of the inhibitors were responsible for specific π–π stacking and π–cation interactions with the choline binding site and the peripheral anionic site of BChE’s active site.     

Silver(I) complexes of dibenzo-18-crown-6-ether having cation-π and π-π interactions

Three silver(I) complexes of dibenzo-18-crown-6-ether (DB[18]C6), [Ag(DB[18]C6)(ClO₄)](THF) (1), [Ag(DB[18]6)(CF₃SO₃)]₂(acetone)₂ (2) and [Ag(DB[18]C6)(CF₃COO)]₂(AgCF₃COO)₂ (3) have been synthesized in different solvents and characterized structurally. In each complex, silver ions prefer an octahedral coordination geometry and form close dinuclear complex with DB[18]C6 based on cation-π interaction in η²-fashion. In particular, the coordination unit involving σ bonding at an oxygen group and π-π bonding between two benzene rings is quite unique.     

CH/π interactions of π-system of acetylacetonato chelate ring: Comparison of CH/π interactions of Ni(II)-acetylacetonato chelate and benzene rings

The calculations have been done for CH/π interaction with π-system of Ni(II)-acetylacetonato chelate ring. The results show that there is an attractive electrostatic interaction, while dispersion component is a major source of attractive interacting energies. The interaction was compared with CH/π interaction between two benzene rings. The comparison shows that two interactions are quite similar, enabling to estimate the energy of CH/π interaction with π-system of Ni(II)-acetylacetonato chelate ring to be about 10.5 kJ/mol. The results indicate that CH/π interactions of chelate ring in various molecular systems can be as important as CH/π interactions of phenyl ring.     

Unusual packing of ET molecules caused by π-π stacking interactions with TRISPHAT molecules in two [ET][TRISPHAT] salts (ET = bis(ethylenedithio)tetrathiafulvalene, TRISPHAT = (tris(tetrachlorobenzenediolato)phosphate(V)))

The synthesis, structure and physical properties of two new radical salts formed with the organic donor bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF or ET) and a racemic mixture of the chiral anion (tris(tetrachlorobenzenediolato)phosphate(V)) (TRISPHAT) are reported. The structure of the salts (ET)₄[TRISPHAT]₄ · 3.5H₂O (1) and (ET)(TRISPHAT) · CH₂Cl₂ · CH₃CN (2) has been solved by X-ray single crystal diffraction. Unusual packings of ET molecules are obtained in the two structures. The electrical properties indicate that both compounds are insulators. This is in agreement with the isolation of the ET molecules and their complete ionization. On the other hand, the anisotropy of the ESR lines has been studied by Q-band ESR spectra.     

Binuclear metal complexes. 59. Synthesis and magnetism of dicopper(II) and copper(II)-nickel(II) complexes with N,N′-ethylenedisalicylamidatocuprate(II)

The complexes [Cu(samen)Cu(L)] and [Cu(samen)Ni(L)₂] (Lbpy, phen) have been synthesized by the reaction of sodium N,N′-ethylenedisalicylamidatocuprate(II) pentahydrate (Na₂- [Cu(samen)]·5H₂O), a divalent metal ion, and 2,2′- dipyridyl or 1,10-phenanthroline. Cryomagnetic data for the CuCu complexes did not fit the Bleaney- Bowers equation; but the data did fit a modified Bleaney-Bowers equation

with a large negative J and a significant negative θ, suggesting that a considerable magnetic interaction operates between essentially planar [Cu(samen)Cu(L)] molecules. The magnetisms of the CuNi complexes were well interpreted in terms of the susceptibility equation based on the Heisenberg model. An antiferromagnetic spin-exchange interaction (J= −13∼−14 cm⁻¹) was suggested between the metal ions.     

Spectroscopic studies of metal complexes containing π-delocalized sulfur ligands. The pre-resonance Raman spectra of the antitumor agent 2-formylpyridine thiosemicarbazone and its Cu(II) and Zn(II) complexes

The pre-resonance Raman spectra of 2-formylpyridine thiosemicarbazone have been measured at three pH values corresponding to the fully protonated (H₂FPT⁺), half protonated (HFPT) and deprotonated (FPT⁻) forms of the ligand. Assignments of the vibrations coupled with the π→π^* transition have been made by comparison with the spectrum of the deuterated form (DFPT). The pre-resonance Raman spectra of the Zn(II) and Cu(II) complexes, [ZnFPT]⁺, [CuFPT]⁺ and [CuHFPT]²⁺, have also been measured. The spectral pattern of the Cu(II) complexes shows resonance enhancement of vibrations coupled with the π→π^*, as well as with the ligand to metal charge transfer transitions. In addition, it is consistent with coordination through thiolate sulfur in [CuFPT]⁺ and thione sulfur in [CuHFPT]²⁺.     

Intensity enhancement of intraligand singlet-triplet π-π transition for the coordinated β-diketonate in Ni(II) complexes with a nitroxide radical

Room temperature and low temperature magnetic circular dichroism (MCD) in the intraligand spin-forbidden singlet-triplet π-π^∗ transition for the coordinated β-diketonate ligands were observed for the β-diketonato Ni(II) complexes with a chelated imino or nitronyl nitroxide radical, but not for the β-diketonato Ni(II) complexes without the radical ligands. This is elucidated by the borrowing mechanism from the singlet-singlet π-π^∗ transition through the hypothetical interligand β-diketonate-to-radical charge transfer (LLCT) in contrast to the case of Cr(III) complexes.     

Coordination geometry isomerism induced by N-H?Cl, C-H?Cl, C-H?N, C-H?π and π?π supramolecular interactions in mercury(II) complexes with tripyridylimidazole chelating ligands

Reaction of HgCl₂ with trans-(±)2-(2,5-di(pyridin-2-yl)-4,5-dihydro-1H-imidazol-4-yl)pyridine (L1) and cis-(±)-(phenyl(2,4,5-tri(pyridin-2-yl)-4,5-dihydroimidazol-1- yl)methanone (L2) gives mononuclear complexes, 1 and 2. In these complexes L1 and L2 behave as tridentate and bidentate chelating ligands, giving distorted trigonal bipyramidal and tetrahedral coordination geometries, respectively. X-ray diffraction studies revealed a series of N-H?Cl, C-H?Cl, C-H?N and C-H?π interactions in 1 giving a 3D network, and N-H?Cl, C-H?Cl, C-H?π and π?π interactions in 2 giving a 2D network in the crystal lattice. Since both ligands should have a similar binding capacity to the mercury ions, the variations observed for coordination number and geometry should be a consequence of supramolecular stabilizing effects.     

Copper(II) complexes based on a new chelating 4-(3,5-diphenyl-1H-pyrazol-1-yl)-6-(piperidin-1-yl)pyrimidine ligand: Synthesis and crystal structures. Lone pair-π, C-H···π, π-π and C-H···A (A = N, Cl) non-covalent interactions

A new bidentate chelating pyrazolylpyrimidine ligand bearing a strong electron-donating substituent, i.e. 4-(3,5-diphenyl-1H-pyrazol-1-yl)-6-(piperidin-1-yl)pyrimidine (L) (Scheme 1), has been synthesized and used to obtain the copper(II) complexes by reaction with CuCl₂. The molar ratio Cu:L = 1:2 leads to isolation of a complex having CuL₂Cl₂ empirical formula, while the molar ratio Cu:L = 1:1 gives a complex with CuLCl₂ empirical formula. The crystal structure of L as well as the structures of both complexes were studied by single crystal X-ray diffraction. The crystal structure of CuL₂Cl₂ compound is formed by trans-[CuL₂Cl₂] mononuclear molecules. Surprisingly, in contrast to the previous compound having molecular structure, the crystal structure of CuLCl₂ consists of mononuclear [CuL₂Cl]⁺ complex cations and dinuclear [Cu₂Cl₆]²⁻ anions. Thus, formula of CuLCl₂ complex can be represented as [CuL₂Cl]₂[Cu₂Cl₆]. In both complexes molecules of L adopt bidentate chelating coordination mode through N² atom of pyrazole and N³ atom of pyrimidine rings forming five-membered CuN₃C metallocycles. Owing to C-H···N interactions and π-π-stacking L molecules form 2D network. In the structure of trans-[CuL₂Cl₂] there exist double lone pair(N(piperidine))-π(pyrimidine) interactions and C-H···Cl contacts resulting in the formation of 1D chains. Layered 2D structure of [CuL₂Cl]₂[Cu₂Cl₆] results from C-H···Cl, C-H···π and double lone pair(Cl([CuL₂Cl]⁺ complex cation)-π(pyrimidine) interactions.     

Intramolecular π-π stacking interactions in aqueous solution in mixed-ligand copper(II) complexes formed by heteroaromatic amines and the nucleotide analogue 9-[2-(phosphonomethoxy)ethyl]-2-aminopurine (PME2AP), an isomer of the antivirally active 9-[2-(phosphonomethoxy)ethyl]adenine (PMEA)

The stability constants of the mixed-ligand complexes formed between Cu(Arm)²⁺, where Arm = 2,2′-bipyridine (Bpy) or 1,10-phenanthroline (Phen), and the monoanion or the dianion of 9-[2-(phosphonomethoxy)ethyl]-2-aminopurine (PME2AP), a structural isomer of the antivirally active 9-[2-(phosphonomethoxy)ethyl]adenine (PMEA), were determined by potentiometric pH titrations in aqueous solution at 25 °C and I = 0.1 M (NaNO₃). Detailed stability constant comparisons reveal that in the monoprotonated ternary Cu(Arm)(H;PME2AP)⁺ complexes the proton is at the phosphonate group and that stacking between Cu(Arm)²⁺ and H(PME2AP)⁻ plays a significant role. The ternary Cu(Arm)(PME2AP) complexes are considerably more stable than the corresponding Cu(Arm)(R-PO₃) species, where represents a phosph(on)ate ligand with a group R that is unable to participate in any kind of interaction within the complexes. The increased stability is attributed to intramolecular stack formation in the Cu(Arm)(PME2AP) complexes and also, to a smaller extent, to the formation of 5-membered chelates involving the ether-oxygen present in the residue of PME2AP²⁻. This latter interaction was previously quantified by studying ternary Cu(Arm)(PME) complexes (PME²⁻ = dianion of (phosphonomethoxy)ethane), which can form the 5-membered chelates but where no intramolecular ligand-ligand stacking is possible. Application of these results allows a quantitative analysis of the intramolecular equilibria involving three structurally different Cu(Arm)(PME2AP) species; e.g., about 5% of the Cu(Bpy)(PME2AP) system exist with the metal ion solely coordinated to the phosphonate group, 15% as a 5-membered chelate involving the ether-oxygen atom of the residue, and 80% with an intramolecular π-π stack between the purine moiety of PME2AP²⁻ and the aromatic rings of Bpy. Finally, comparison of the stacking properties of PME2AP²⁻ and PMEA²⁻ in their ternary complexes reveals that stacking is somewhat more pronounced in the Cu(Arm)(PMEA) than in the Cu(Arm)(PME2AP) species. Speculatively, this reduced stacking intensity, together with a different hydrogen-bonding pattern, could well lead to a different positioning of the 2-aminopurine moiety (compared to the adenine residue) in the active site cavity of nucleic acid polymerases and thus be responsible for the reduced antiviral activity of PME2AP compared with that of PMEA.     

A family of lanthanide-containing molecular open frameworks with high porosity: [Ln(abdc)(Habdc), nH2O]∞ with Ln = La-Eu and 8 ? n ? 11

Reactions in water between the di-sodium salt of amino terepthalic acid (C₈H₃NO₄Na₂) and a lanthanide chloride lead to a family of 3D-coordination polymers with general chemical formula [Ln(C₈H₃NO₄)(C₈H₄NO₄), O]_∞ where Ln = La-Eu (except Pm) and 8 ? n ? 11. All these compounds are isostructural. High quality single crystals of [Ln(C₈H₃NO₄)(C₈H₄NO₄), nH₂O]_∞ with Ln = La-Sm (except Pm) and 8 ? n ? 11 have been obtained by slow diffusion in agar-agar gels. The crystal structure has been solved for the Nd-containing compound. This compound crystallizes in the cubic system, space group Ia-3 (no. 206) with a = 26.8056(5) Å. The crystal structure can be described as the juxtaposition of large channels with square cross-section.The channels are filled by highly disordered crystallization water molecules. The dehydration of the compounds by freeze-drying is possible and most of the crystallization water molecules can be removed without destruction of the molecular skeleton. The partially dehydrated compounds have general chemical formula [Ln(abdc)(Habdc), 2H₂O]_∞ with Ln = La-Eu except Pm. The porosity of the Nd-containing compound has been estimated by computational methods to 2170 m² g⁻¹. This dehydrated compound reversibly binds water when exposed to wet atmosphere restoring the initial hydrated phase.     

Speciation of binary complexes of Co(II), Ni(II) and Cu(II) with L-aspartic acid in propylene glycol–water mixtures

Abstract

Speciation of binary complexes of Co(II), Ni(II) and Cu(II) with L-aspartic acid in (0-60% v/v) propylene glycol-water mixtures was studied pH metrically at 303.0±0.1 K and at an ionic strength of 0.16 mol L^-1. The binary species refined were ML, ML₂, ML₂H₂, ML₂H₃ and ML₂H₄. The stabilities of the complexes followed the Irving-Williams order i.e.Co(II) <Ni(II) < Cu(II). The linear variation of stability constants as a function of dielectric constant of the medium indicated the dominance of electrostatic forces over non-electrostatic forces. Some species were stabilised due to electrostatic interactions and some were destabilised due to the decreased dielectric constant. The order of ingredients influencing the magnitudes of stability constants due to incorporation of errors in their concentrations was alkali > acid > ligand > metal. Equilibria for the formation of binary complexes were proposed based on the forms of the ligand and their existence at different pH values.     

Synthesis,DNA/BSA binding studies and in vitro biological assay of nickel(II) complexes incorporating tridentate aroylhydrazone and triphenylphosphine ligands

Abstract

Two new nickel (II) triphenylphosphine complexes derived from tridentate aroylhydrazone ligands [H₂L¹ = 2-hydroxy-3-methoxybenzylidene)benzohydrazone and H₂L² = N′-(2-hydroxy-3-methoxybenzylidene)-2-hydroxybenzoylhydrazone] and triphenylphosphine were prepared and their molecular structures were determined by single crystal X-ray diffraction analysis. Both nickel(II) complexes showed slightly distorted square planar geometry with one tridentate aroylhydrazone ligand coordinated through ONO donor atoms and one triphenylphosphine ligand coordinated to the nickel center through the phosphorus atom. DNA interaction studies indicated that both complexes possessed higher affinity to herring sperm DNA (HS-DNA) than the corresponding free aroylhydrazone ligand. Molecular docking investigations showed that both complexes could bind to DNA through intercalation of the phenyl rings between adjacent base pairs in the double helix. Meanwhile, bovine serum albumin (BSA) binding studies revealed the complexes could effectively interact with BSA and change the secondary structure of BSA. Further pharmacological evaluations of the synthesized complexes by in vitro antioxidant assays demonstrated high antioxidant activity against NO· and O₂˙^? radicals. The anticancer activity of each complex was assessed through in vitro cytotoxicity assays (CCK-8 kit) toward A549 and MCF-7 cancer cell and normal L-02 cell lines. Significantly, the Ni(II) complex derived from H₂L¹ ligand was found to be more effective cytotoxic toward MCF-7cancerous cell with the IC₅₀ value equaled 9.7?μM, which showed potent cytotoxic activity over standard drug cisplatin.

Abbreviations A549 human lung carcinoma cell

BSA bovine serum albumin

CCK-8 Cell Counting Kit-8

DFT density functional theory

DNA deoxyribonucleic acid

DPPH˙ 2,2-diphenyl-1-picrylhydrazyl

H₂L¹ 2-hydroxy-3-methoxybenzylidene)benzohydrazone N′-(2-hydroxy-3-methoxybenzylidene)-2-hydroxybenzoylhydrazone

H₂L² N′-(2-hydroxy-3-methoxybenzylidene)-2-hydroxybenzoylhydrazone

HOMO highest occupied molecular orbital

IC₅₀ the 50% activity

L-02 human normal liver cell

LOMO lowest unoccupied molecular orbital (LUMO)

MCF-7 human breast carcinoma cell

NO˙ nitric oxide

O₂˙^? superoxide anion

SOD superoxide dismutase

Communicated by Ramaswamy H. Sarma     

Intramolecular hydrogen bonding, π-π stacking interactions,and substituent effects of 8-hydroxyquinoline derivative supermolecular structures: a theoretical study

Journal of Molecular Modeling - Syn and anti dihydropyrene (DHP) are excellent thermochromes, and therefore extensively studied for their thermochromic and photochromic properties, respectively....     

Synthesis, crystal structures, and spectroscopic characterization of the neutral monomeric tetrahedral [M(Diap)2(OAc)2] · H2O complexes (M = Zn,Cd; Diap = 1,3-diazepane-2-thione; OAc = acetate) with N-H?O and O-H?O intra- and intermolecular hydrogen bonding interactions

The title complexes, [M(Diap)₂(OAc)₂] · H₂O (M = Zn,Cd; Diap = 1,3-diazepane-2-thione; OAc = acetate) with an MO₂S₂ configuration, have been characterized by X-ray crystallography as well as FT-IR, ¹H and ¹³C NMR spectroscopy. In these complexes, the metal atoms lie in a pseudo-tetrahedral environment and are coordinated by the thione sulfur atoms of two neutral 1,3-diazepane-2-thione ligands and one oxygen atom from each of two monodentate acetate anions. In both complexes, there are two intramolecular N-H?O hydrogen bonds, each being between one NH group of a Diap ligand and the uncoordinated O atom of an OAc ligand. The water molecule is also involved in hydrogen bonds, as an acceptor and as a donor twice, linking together three symmetry-related complexes. The Cd complex undergoes a structural phase transition from a monoclinic form at 150 K with Z′ = 2 to a smaller monoclinic cell at room temperature with Z′ = 1 without loss of crystallinity. The Zn complex does not exhibit an equivalent phase transition, and at 150 K is isostructural with the room-temperature form of the Cd complex. All three crystallographically independent molecules found for the Cd complex (two at low temperature and one at room temperature) have essentially the same structure except for small changes in the conformations of the ligands. Tetrahedral coordination with monodentate carboxylate ligands is common for Zn complexes of this kind, but is unusual for Cd complexes, and is the result of the bulky Diap ligands.     

The coordination of copper(II) with β-casomorphin and its fragments

The synthesis of β-casomorphin-5 (Tyr-Pro-Phe-Pro-Gly, H₂L) and a number of its peptide fragments is described. Complexes formed between these peptides and Cu(II) have been investigated spectrophotometrically, using CD and EPR spectroscopy, and potentiometrically. Results show that, with tyrosine as the N-terminal residue, the major complex formed at physiological pH is the dimeric species, [Cu₂L₂], bonded through the phenolic O^? of the Tyr residue of one ligand and the N-terminal amine nitrogen of the second ligand molecule. There is no evidence for coordination through the peptide nitrogens unless the terminal Tyr group is removed.