Genetic variation in isozymes of wild boar (Sus scrofa ferus Linné)

Eleven isozyme systems were investigated in wild boar (Sus scrofa ferus L.) by means of horizontal starch gel-electrophoresis using liver and kidney extracts. Samples of 103 specimen that originated from three adjunct localities from Rhineland-Palatinate (Fed. Rep. Germany) were analysed. AAT, ACO, GDH, GPDH, LDH, ME, MPI, MR, PGDH, and PGI were invariant. Genetic polymorphism is described for PGM. The genetic polymorphism at Pgm2 is explained by a biallelic model. Observed genotypic structure did not differ significantly from Hardy-Wein-berg-proportions at this gene locus. The degree of heterozygosity is 58,3 % and Wright's Fixation Index F =–0.166 at Pgm2. The allelic structure at this gene locus differed to a great extent from that found in domestic swine, i. e. in domestic swine the faster migrating Pgm2 allozyme was only found in relative low frequencies compared to wild boar. The genetic polymorphisms were moderate in the wild boar population compared to electrophoretic data of other animal species.     

The Balkans and the colonization of Europe: the post‐glacial range expansion of the wild boar,Sus scrofa

Aim We focus on the biogeographical role of the Balkan Peninsula as a glacial refugium and source of northward post‐glacial dispersal for many European taxa. Specifically, we analysed the genetic structure and variation of wild boar (Sus scrofa) samples primarily from Greece, a region that has repeatedly served as a glacial refugium within the Balkan Peninsula. Location Continental Greece, the Aegean island of Samos and Bulgaria. Methods We analysed wild boar samples from 18 localities. Samples from common domestic breeds were also examined to take into account interactions between wild and domesticated animals. Phylogenetic analyses were carried out on a 637‐bp fragment of the mitochondrial DNA control region in 200 wild boar and 27 domestic pigs. The sequences were also compared with 791 Eurasian wild boar and domestic pig D‐loop sequences obtained from GenBank. Results Ninety‐four haplotypes were identified in the European wild boar data set, of which 68 were found in the Balkan samples and assigned to two previously described clades: the E1 European and Near Eastern clades. All of the continental samples clustered in the E1 clade and the samples from Samos fell into the Near Eastern clade, consistent with the island’s proximity to Asia Minor. Intriguingly, 62 novel haplotypes were identified and are found exclusively in the Balkans. Only six haplotypes were shared between wild boar and domestic pigs. Main conclusions Our data reveal numerous novel and geographically restricted haplotypes in wild boar populations, suggesting the presence of separate refugia in the Balkans. Our analyses support the hypothesis of a post‐glacial wild boar expansion consistent with the leading edge model, north and west from modern day Greece, and suggest little maternal introgression of Near Eastern and domestic haplotypes into wild Balkan populations.     

Geographic population structure and sequence divergence in the mitochondrial DNA control region of the Japanese wild boar (Sus scrofa leucomystax), with reference to those of domestic pigs

Mitochondrial DNA (mtDNA) control regions from 40 Japanese wild boars were examined by direct sequencing after amplification by PCR. From the DNA sequences obtained, we found eight haplotypes, whose differences arose via transitions. The geographical distribution of these different haplotypes indicated that wild boar populations inhabited limited areas and that there was some restricted gene flow between local populations. Eight mtDNA haplotypes from Eastern and Western domestic pigs and the Ryukyu wild boar were also analyzed as references to those from Japanese wild boars. The cluster analyses of the control-region sequences showed that those from Japanese wild boards belong to the Asian type as do those from Eastern domestic pigs and the Ryukyu wild boar, which differed from the European type (Western domestic pigs).     

Phylogeography and population structure of the Japanese wild boar Sus scrofa leucomystax: mitochondrial DNA variation

Phylogeographic characteristics and population structure of Japanese wild boar (Sus scrofa leucomystax) were investigated using mitochondrial DNA (mtDNA) sequence data. Sixteen Japanese wild boar haplotypes detected from partial sequences of the mtDNA control region (574-bp) from 180 Japanese wild boar specimens from 10 local populations on Honshu, Shikoku, and Kyushu islands and 41 haplotypes from other S. scrofa were analyzed using the neighbor-joining method. The Japanese wild boars were more closely related to Northeast Asian wild boars from Mongolia than to the other Asian continental S. scrofa. The Japanese and Northeast Asian wild boars were not significantly distinguished by corrected average pairwise difference analysis. The ancestors of Japanese wild boars are suggested to have been part of the continental S. scrofa population that spread from Southeast to Northeast Asia during the Middle to Late Pleistocene. The Japanese wild boar mtDNA haplotype cladogram shows 95% parsimoniously plausible branch connections supporting three sympatric clades. Nested clade analysis indicates that these three clades are the result of distinct historical events or gene flow. The present population of Japanese wild boars may have been formed by a few independent migrations of distinct clades from the continent with subsequent mixing on the Japanese Islands.     

伏牛山北坡野猪(Sus scrofa)泥浴场的生境特征

2005年6月至8月,在伏牛山北坡对野猪的泥浴场特征进行了研究.野外设置了42个20×20m2样方和14个生态因子,以此为基准运用聚类分析和主成分分析的方法,对野猪泥浴场进行了分析,结果表明,野猪泥浴场的生境特征为:(1)安全舒适因子:无倒木、无树桩、隐蔽距离30m以下、黄泥土质、郁闭度80%以上;(2)植被地形因子:乔木距离适中、灌木距离小于1m、坡度小于30°;(3)植被类型因子:高度倾向阔叶林;(4)干扰因子:人为干扰距离大于500 m;(5)海拔因子:海拔高度大于1000 m.在水源距离和坡位两项上没有明显的偏向.     

Molecular characterization of the complete mitochondrial genome sequence of Indian wild pig (Sus scrofa cristatus)

The Indian wild pig is a sub-species (Sus scrofa cristatus) which is different from the other pig breeds and is protected under Schedule-III of the Indian Wildlife (Protection) Act, 1972. In this study, complete mitogenome of two Indian wild pigs was sequenced and characterized by shotgun sequencing and de novo assembly, which revealed sequence size of 16,738 and 16,251?bp, respectively, (Accession no. MG725630 and MG725631). The mitogenome sequence in this study displayed 98% homology with previously reported mitogenome of pigs from different parts of the world. Mitogenome analysis by MITOS Web server revealed similarity of gene organization with the other vertebrates (13 protein-coding, 22 tRNAs, 2 rRNAs genes, and a control region). The mitogenomic sequences of Indian wild pig maintained a separate clade in the phylogenetic tree constructed by using 62 whole mitogenome sequences across the world. The phylogeny derived from mitogenomic sequences revealed distinct separate European–American and Asiatic pig clades. It was concluded that whole mitogenome sequencing using NGS without designing mitogenome-specific primer for amplification, is possible thereby reducing the cost and labor. This study is the first report of complete sequence of mitogenome of Indian wild pig.     

东北亚地区野猪种群mtDNA遗传结构及系统地理发生

研究测定了中国东北、华北及四川西部72个野猪(Susscrofa)个体线粒体控制区全序列,并结合GenBank报道的日本野猪(S.s.leucomystax)、琉球野猪(S.s.riukiuanus)72个同源区序列,分析了东北亚地区野猪线粒体DNA的变异及系统地理格局。在东北亚地区野猪的线粒体控制区共发现42个变异位点,均为转换,共定义了34个单元型。单元型之间的系统发生分析表明,东北亚地区野猪来自同一祖先。东北亚地区野猪现生种群具有显著的种群遗传结构,其中日本野猪与分布于中国东北地区的东北野猪之间亲缘关系较近;而琉球野猪则与华北野猪间亲缘关系较近,与日本野猪和东北野猪间的关系相对较远。嵌套进化枝系统地理分析(Nestedcladephylogeographicalanalysis,NCPA)表明:东北亚地区野猪由同一祖先经过长距离的迁徙而形成现生各种群(或亚种);琉球野猪应起源于大陆野猪,其种群演化可能经历了片断化事件;华北野猪呈现南部种群遗传多样性高的特点,其种群内部曾经历了一次分布区由南向北的扩张     

Wildlife genetics and disease: allozyme evolution in the wild boar (Sus scrofa) caused by a swine fever epidemy

Enzyme polymorphism at 42 loci was compared before and after a major epidemy of swine fever in wild boars from northern Vosges (France). No change was observed in the 38 monomorphic loci, but allele frequencies at the phosphoglucomutase locus PGM-2* changed significantly. Possible causes for this observation are discussed, and it appears that PGM-2 locus could be a genetic marker of resistance to this viral disease.     

Prevalence of Onchocerca japonica and O. takaokai infections in the Japanese wild boar,Sus scrofa leucomystax,and the Ryukyu wild boar,S. s. riukiuanus,in Japan

Reports of zoonotic infections with Onchocerca japonica (Nematoda: Filarioidea), which parasitizes the Japanese wild boar, Sus scrofa leucomystax, have recently increased in Japan. To predict the occurrence of infection in humans, it is necessary to determine the prevalence of O. japonica infection in the natural host animals. We investigated the presence of adult worms in the footpads, and of microfilariae in skin snips, taken from the host animals, between 2000 and 2018. Onchocerca japonica was found in 165 of 223 (74%) Japanese wild boars in Honshu and Kyushu. Among the nine regions studied, the highest prevalence of O. japonica infection was found in Oita, Kyushu, where 47 of 52 (90.4%) animals were infected. The ears were the predilection sites for O. japonica microfilariae. Adult worms of O. japonica were found more frequently in the hindlimbs than in the forelimbs of the host animals. Onchocerca takaokai was found in 14 of 52 (26.9%) Japanese wild boars in Oita. In Kakeroma Island among the Nansei Islands, both O. japonica and O. takaokai were isolated from the Ryukyu wild boar, S. s. riukiuanus. These observations could help predict future occurrences of human zoonotic onchocercosis in Japan.     

Grouping-patterns and inter-group relationships of Japanese wild boars (Sus scrofa leucomystax) in the Rokko mountain area

Grouping-patterns and inter-group relationships of Japanese wild boars (Sus scrofa leucomystax) were studied at a provisioning site in the Rokko mountain area, Hyogo Prefecture, Japan, from 1982 to 1983. The observations were divided into four study periods. Almost all wild boars were individually identified and their kin-relationships were followed from the beginning of the study. To examine grouping-patterns of Japanese wild boars, the degree of association between any two individuals, based on coexisting time at the provisioning site, was analyzed for each study period. Mother and her litter group (MLG), female littermate group (FLG) and solitary individual were recognized grouping-patterns. Groups did not associate with each other. Male offspring separated from their mother before 1 year of age and become solitary. Separation of female offspring occurred before the subsequent parturition of their mother. The proximate cause of separation was increased aggression by the mother. After separation, female offspring formed a FLG. However, the FLG seemed to be generally a temporary one, maintaining its stability only until parturition of it's members. Thereafter adult females had no close association with any other individuals, except for their own infants. Male offspring disappeared from their natal area, while female offspring could remain there.     

Biogeographical variation in the population density of wild boar (Sus scrofa) in western Eurasia

Aim We reviewed 54 studies reporting population densities of wild boar (Sus scrofa) in western Eurasia in order to investigate the roles of vegetation productivity [fraction of photosynthetically active radiation (FPAR) index], winter harshness (mean January temperature) and presence/absence of wolves (Canis lupus) in shaping the biogeographical variation in population density of wild boar. Location We collected published data on the autumn–winter population density of wild boar (number of individuals km^?2) in 54 locations in western Eurasia, from 1966 to 2003. Methods The mean January temperature, obtained from the World Climate data base ( http://www.worldclimate.com ), was taken as a measure of winter severity. We used monthly 4 × 4 km MODIS FPAR data sets covering January 2000 to June 2004 to calculate the vegetation productivity index. In addition, we collected literature data about the presence or absence of wolves from the study areas. Results In the geographical span of 37–60° N, the population densities of wild boar declined by three orders of magnitude, from 10 to 0.01 individuals km^?2. The best multiple regression model (selected with the Akaike information criterion corrected for small samples) showed that mean January temperature and the vegetation productivity index were the most important factors explaining the biogeographical variation in population densities of wild boar. The impact of temperature was stronger than that of productivity. The presence of wolves had a weak limiting effect on population densities of wild boar at the biogeographical scale. Main conclusion We propose that winter harshness imposes density‐independent mortality on wild boar populations at higher latitudes. Competition for food in less productive regions may cause stronger density dependence in birth and death rates of wild boar populations. We expect that wild boar will respond to global warming by both an increase in local population densities and an expansion of their geographical range north and north‐eastwards.     

Dispersal of freshwater invertebrates by large terrestrial mammals: a case study with wild boar (Sus scrofa) in Mediterranean wetlands

1. Many invertebrates inhabiting insular aquatic habitats rely on external agents or vectors to disperse. Besides water connections and wind, waterfowl and amphibians are known to mediate passive dispersal of freshwater invertebrates. However, the possibility of dispersal by terrestrial mammals has been largely overlooked. 2. We investigated the potential of both external and internal zoochorous dispersal of aquatic invertebrates by the wild boar (Sus scrofa) in Mediterranean wetlands in the Camargue (France). As wild boar frequently visit wetlands for feeding and wallowing purposes, we hypothesized that they may be important passive dispersal vectors of aquatic invertebrates at a local scale. Dried mud was collected from selected ‘rubbing trees’ used by boars to dispose of parasites. Additionally, faecal pellets were collected from different locations in the wetland area. 3. Seventeen freshwater invertebrate taxa including rotifers, cladocerans, copepods and ostracods hatched from sediment obtained from ‘rubbing trees’, while invertebrates hatching from dried faeces (10 taxa) were mainly rotifers. Dispersing invertebrates were collected up to 318 m from a nearest potential dispersal source. Both abundance and richness of invertebrates significantly decreased with dispersal distance. 4. Our results demonstrate that large mammals such as wild boar can act as dispersal vectors of aquatic invertebrates at a local scale in the wetland area of the Camargue and suggest that external transport may be quantitatively more important than internal transport. As wallowing (mud bathing) is common in many terrestrial mammals, this mode of dispersal may be quite widespread.     

Mitochondrial DNA Sequence and Phylogenetic Evaluation of Geographically Disparate Sus scrofa Breeds

Next generation sequencing of mitochondrial DNA (mtDNA) facilitates studies into the metabolic characteristics of production animals and their relation to production traits. Sequence analysis of mtDNA from pure-bred swine with highly disparate production characteristics (Mangalica Blonde, Mangalica Swallow-bellied, Meishan, Turopolje, and Yorkshire) was initiated to evaluate the influence of mtDNA polymorphisms on mitochondrial function. Herein, we report the complete mtDNA sequences of five Sus scrofa breeds and evaluate their position within the phylogeny of domestic swine. Phenotypic traits of Yorkshire, Mangalica Blonde, and Swallow-belly swine are presented to demonstrate their metabolic characteristics. Our data support the division of European and Asian breeds noted previously and confirm European ancestry of Mangalica and Turopolje breeds. Furthermore, mtDNA differences between breeds suggest function-altering changes in proteins involved in oxidative phosphorylation such as ATP synthase 6 (MT-ATP6), cytochrome oxidase I (MT-CO1), cytochrome oxidase III (MT-CO3), and cytochrome b (MT-CYB), supporting the hypothesis that mtDNA polymorphisms contribute to differences in metabolic traits between swine breeds. Our sequence data form the basis for future research into the roles of mtDNA in determining production traits in domestic animals. Additionally, such studies should provide insight into how mtDNA haplotype influences the extreme adiposity observed in Mangalica breeds.     

Influence of methylmalonyl-CoA mutase alleles on resistance to bovine tuberculosis in the European wild boar (Sus scrofa)

An association study was carried out to examine the influence of methylmalonyl-CoA mutase (MUT) polymorphisms on the susceptibility of a well-studied wild boar population from southern Spain to develop bovine tuberculosis (bTB). To this end, we examined polymorphisms at a closely linked dinucleotide microsatellite flanking exon 2 of the MUT gene in 37 wild boars with bTB and 36 non-infected individuals. The microsatellite showed low polymorphism in the studied population, with only three alleles (MUTm-A, MUTm-B and MUTm-C) found, in contrast to the 11 alleles previously reported for domestic pigs. Our case-control study showed that the MUTm-B allele was associated with disease in a dominant pattern (odds ratio = 3.36; 95% CI = 1.05-10.72; P = 0.04), while the MUTm AA genotype appeared to have a protective effect against bTB infection (odds ratio = 4.33; 95% CI = 1.20-14.96; P = 0.02). Interestingly, infected wild boars heterozygous for MUTm AB are at an advantage (11-fold) to contain the systemic spread of the disease when compared to other genotypes, implying that a balanced polymorphism may be present in the population. These results strengthen previous observations regarding the importance of the MUT gene on bTB resistance in wild boars and indicate that polymorphisms at this locus will influence the risk of acquiring and maintaining bTB in the studied population.     

浙江清凉峰国家级自然保护区野猪空间分布及活动节律

为了解浙江清凉峰国家级自然保护区内野猪(Sus scrofa)的分布及活动节律,2018年3月至2019年2月,我们利用红外相机技术对其进行了网格化监测。在千顷塘和龙塘山区域总计布设109个红外相机监测点,共计调查39 240个相机日。结果表明,在千顷塘区域,野猪倾向于在落叶阔叶林(拍摄率5.33 ±5.64)和针阔混交林(3.75 ±3.46)活动,而在龙塘山区域,则倾向于针阔混交林(4.32 ±5.21);千顷塘与龙塘山区域野猪各月间的日活动差异指数α均存在极显著差异(P < 0.01),冬季的α值高于其他季节;昼行性指数β的平均值分别为0.870和0.768,显著高于理论值13/24(P < 0.01),表明清凉峰的野猪种群具有明显的昼行性特征,且在冬季的活动时间分配较之其他季节更不均匀。通过核密度估计法分析不同季节野猪的日活动节律发现,保护区内野猪春季有晨昏两个活动高峰(08:00-10:00、17:00-19:00),冬季活动高峰出现在午后(13:00-17:00),其他季节无明显活动高峰。本研究有助于加深对野猪华南亚种生态习性的认知,为保护区的野生动物管理工作提供科学依据。     

Reproduction in a population of wild pigs (Sus scrofa) subjected to lethal control

The continued range expansion of wild pigs (Sus scrofa) in North America is an increasing cause for concern because of the numerous negative impacts that wild pigs have on ecosystem structure and function. Once populations are established, wild pigs have proven to be extremely difficult to control, and close to impossible to eradicate. If effective control and removal techniques are to be developed, we must determine if wild pig populations respond to reductions in density by increasing reproductive output. This study was designed to examine if reproductive parameters of female wild pigs display a density-dependent response following a concentrated removal effort. We compared reproductive parameters and condition of adult sows that were collected between a control area and a treatment area where lethal removal occurred. From August 2004 to May 2006, we focused a concentrated removal effort within the treatment area. Although the population density was more than 65% greater in the control area than the treatment area during the study, we did not detect differences between areas for condition, litter size, ovarian mass, corpus luteum mass, or corpora lutea number. Several years of heavy mast production during the study may have negated any effect on condition and subsequent reproduction between the 2 study areas. These data suggest that reproductive parameters of wild pigs do not exhibit density-dependence during periods when pig populations are in good condition. © 2012 The Wildlife Society.     

吉林珲春地区野猪危害防控研究

近年来人与野生动物冲突日趋严重。2012年7月到2014年10月,利用东北虎(Panthera tigris altaica)粪便、声音在吉林珲春地区开展了野猪(Sus scrofa)危害防控研究。以采取防控措施起始时间到野猪进入实验样地或对照样地的时间间隔作为防控有效期;以实验结束时实验样地内放置东北虎粪便、东北虎声音播放器位置或对照样地中心点与样地内野猪危害发生处的最短距离作为防控范围。将防控有效期和防控范围分别转化为有效期指数和范围指数。结果表明:(1)东北虎粪便对野猪危害防控效果显著,与对照组相比,有效期指数和范围指数均存在显著差异(P0.05);(2)东北虎声音对野猪危害防控效果显著,与对照组相比,有效期指数和范围指数均差异显著(P0.05);(3)同时应用东北虎粪便和声音防控野猪危害效果显著,与对照组相比,有效期指数和范围指数均差异显著(P0.05);(4)单独应用东北虎粪便、单独应用东北虎声音与同时应用东北虎粪便和声音的各种防控方法之间,有效期指数和范围指数无显著差异(P0.05)。本研究认为,东北虎粪便、声音对野猪危害防控效果显著与东北虎是野猪天敌,且珲春地区存在东北虎有关。     

Investigation of wild boar (Sus scrofa) for porcine reproductive and respiratory syndrome in some territories of Russia

Samples of blood sera and internal organs were collected from 90 shot wild boars (Sus scrofa) in five regions of Russian Federation. Blood sera were tested for antibodies against porcine reproductive and respiratory syndrome virus (PRRSV) using enzyme-linked immunosorbent assay (ELISA). In addition, samples of internal organs (lungs, lymph nodes, spleen) were tested by polymerase chain reaction (nested PCR) for PRRSV antigen. The result of our investigation showed that all samples were negative. However, PRRSV is widespread in domestic swine throughout Russia including the examined regions. Since the results show the absence of PRRSV infection in wild boars in the five examined regions of Russia, wild boars seem not to play any role in the epidemiology of PRRSV in Russia.