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1.
《Bioscience, biotechnology, and biochemistry》2013,77(11):2670-2679
DNA is known to be aggregated by metal ions including Mn2+ ions, but analysis of the aggregation process from a chemical viewpoint, which means identification of the product yielded during the process, has not been performed yet. On examination of the kinds of degraded materials that were in the supernatant obtained on centrifugation of a DNA mixture aggregated under conditions of 10 mM Mn2+ ions ([Mn]/[P] = 46.3) at 70 °C for 1 h, the degradation products were found to be dAMP, dCMP, dGMP, and TMP. These dNMPs were purified by HPLC on TSKgel ODS-80Ts and identified by LC-TOF/MS. The degradation activity was lost on pretreatment of the DNA with a phenol–chloroform mixture, and the activity was recovered by pretreatment with a mixture of DMSO and a buffer containing surfactants. Mn2+, Co2+, Ni2+, Cu2+, Zn2+, and Cd2+, as transition element metal ions, were effective as to the degradation into dNMP. Mg2+, Ca2+, Sr2+, and Ba2+, as alkali earth element metal ions, were not effective as to the degradation. Monovalent anions such as Cl?, CH3OO?, and NO3 ? were found to increase the degradation rate. Sixty μg of the 120 μg of the starting DNA in 450 μl was degraded into dNMP on reaction for 1 h in the presence of 100 mM NaCl and 10 mM Mn2+ ions. In this process, aggregation did not occur, and thus was not considered to be necessary for degradation. The degradation was found not to occur at pH 7.0, and to be very sensitive to pH. The OH? ion should have a critical role in cleavage of the phosphodiester linkages in this case. The dNMP obtained in the degradation process was found to be only 5′-NMP, based on the H1NMR spectra. This prosess should prove to be a new process for the production of 5′-dNMP in addtion to the exonuclease. 相似文献
2.
The regulatory role of Ca2+-stimulated adenosine 5-triphosphatase (Ca2+-ATPase) in Ca2+ transport system of rat liver nuclei was investigated. Ca2+ uptake and release were determined with a Ca2+ electrode. Ca2+-ATPase activity was calculated by subtracting Mg2+-ATPase activity from (Ca2+–Mg2+)-ATPase activity. The release of Ca2+ from the Ca2+-loaded nuclei was evoked progressively after Ca2+ uptake with 1.0 mM ATP addition, while it was only slightly in the case of 2.0 mM ATP addition, indicating that the consumption of ATP causes a leak of Ca2+ from the Ca2+-loaded nuclei. The presence of N-ethylmaleimide (NEM; 0.1 mM) caused an inhibition of nuclear Ca2+ uptake and induced a promotion of Ca2+ release from the Ca2+-loaded nuclei. NEM (0.1 and 0.2 mM) markedly inhibited nuclear Ca2+-ATPase activity. This inhibition was completely blocked by the presence of dithiothreitol (DTT; 0.1 and 0.5 mM). Also, DTT inhibited the effect of NEM (0.1 mM) on nuclear Ca2+ uptake and release. Meanwhile, verapamil and diltiazem (10 M), a blocker of Ca2+ channels, did not prevent the NAD+ (1.0 and 2.0 mM), zinc sulfate (1.0 and 2.5 M) and arachidonic acid (10 M)-induced increase in nuclear Ca2+ release, suggesting that Ca2+ channels do not involve on Ca2+ release from the nuclei. These results indicates that an inhibition of nuclear Ca2+-ATPase activity causes the decrease in nuclear Ca2+ uptake and the release of Ca2+ from the Ca2+-loaded nuclei. The present finding suggests that Ca2+-ATPase plays a critical role in the regulatory mechanism of Ca2+ uptake and release in rat liver nuclei. 相似文献
3.
Abstract The structure of 2′,3′-didehydro-2′,3′-dideoxyguanosine was determined by X-ray crystallographic analysis of the complex with pyridine. The two independent nucleoside molecules have similar, commonly observed glycosyl link (x = -102.3° and -94.2°) and 5′-hydroxyl (y = 54.0° and 47.6°) conformations. The five-membered rings are very planar with r.m.s. deviations from planarity of less than 0.015 A. 2′,3′-Didehydro-2′,3′-dideoxyadenosine has a similar glycosyl link conformation but a different 5′-hydroxyl group orientation and a slightly less planar 5-membered ring. 相似文献
4.
Mireia Güell Josep M. Luis Miquel Solà Per E. M. Siegbahn 《Journal of biological inorganic chemistry》2009,14(2):229-242
Tyrosinase catalyzes the ortho hydroxylation of monophenols and the subsequent oxidation of the diphenolic products to the resulting quinones. In efforts
to create biomimetic copper complexes that can oxidize C–H bonds, Stack and coworkers recently reported a synthetic μ-η2:η2-peroxodicopper(II)(DBED)2 complex (DBED is N,N′-di-tert-butylethylenediamine), which rapidly hydroxylates phenolates. A reactive intermediate consistent with a bis-μ-oxo-dicopper(III)-phenolate
complex, with the O–O bond fully cleaved, is observed experimentally. Overall, the evidence for sequential O–O bond cleavage
and C–O bond formation in this synthetic complex suggests an alternative mechanism to the concerted or late-stage O–O bond
scission generally accepted for the phenol hydroxylation reaction performed by tyrosinase. In this work, the reaction mechanism
of this peroxodicopper(II) complex was studied with hybrid density functional methods by replacing DBED in the μ-η2:η2-peroxodicopper(II)(DBED)2 complex by N,N′-dimethylethylenediamine ligands to reduce the computational costs. The reaction mechanism obtained is compared with the
existing proposals for the catalytic ortho hydroxylation of monophenol and the subsequent oxidation of the diphenolic product to the resulting quinone with the aim
of gaining some understanding about the copper-promoted oxidation processes mediated by 2:1 Cu(I)O2-derived species.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
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M. Berger A. Shaw J. Cadet J. R. Jones 《Nucleosides, nucleotides & nucleic acids》2013,32(1-2):395-396
Abstract The deuterations of 2′-deoxyguanosine in the 4′ and 5′ positions have been described elsewhere (1). The starting material is the 5′-aldehyde formed by mild oxidation with N,N-dicyclohexyl carbodiimide in dimethyl sulphoxide of the fully protected nucleoside with free 5′-alcoholic function. The 5′4euteration was achieved by reduction with deuterated sodium borohydride. Incorporation of deuterium in the 4′-position was achieved v i a an enhanced keto-enol tautomerim by heating the aldehyde in 50/50 D20/pyridine, with subsequent reduction of the aldehyde with NaBH4. The 6-furanoid form was isolated from the I-lyxo by-product by reverse phase HPLC. Applied to pyrimidine 2′-deoxyribonucleosides, this method was shown to give deuterated 2′-deoxycytidine and thymidine in good yield. 相似文献
7.
Anastassia Kanavarioti 《Origins of life and evolution of the biosphere》1986,17(1):85-103
We have studied the hydrolysis of guanosine 5-phospho-2-methylimidazolide, 2-MeImpG, in aqueous buffered solutions of various pH's at 75°C and 37°C. At 75°C and pH1.0, two kinetic processes were observed spectrophotometrically: the first and more rapid one is attributed to the hydrolysis of the phosphoimidazolide P-N bond; the second and much slower one, to the cleavage of the glycosidic bond. At 37°C, pH 2.0, the spectrophotometrically determined rate constant of P–N bond hydrolysis was confirmed by using high pressure liquid chromatography, HPLC. With the latter technique it was possible to separate reactants and products and also to extend the pH-rate profile into the neutral region where rates are slower and, therefore, difficult to measure spectrophotometrically. The pH-rate profiles at both temperatures exhibit similar behavior. At pH<2 the pseudo-first-order rate constant increases with decreasing pH; in the region 27. These data are consistent with a reactivity order zwitterion>anion for P–N bond hydrolysis. It is noteworthy that P–N bond hydrolysis in phosphoimidazolides is very slow compared to other phosphoramidates. This may be one of the reasons why this compound showed extraordinary ability in forming long oligomers under template-directed conditions. 相似文献
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9.
《Inorganica chimica acta》1987,128(1):27-29
2′-Deoxy-5′-guanosinemonosphoric acid (B) reacts with cis-[Pt(NH3)2(OH2)2]2+ in two steps to form the cis-[Pt(NH3)2B2]y+ ion. In the first step 2′-d-5′- GMPH2 reacts some ten times faster than 5′-GMPH2 does. Rate constants, ΔH#, ΔS# and ΔV# are very similar for the two bases in the second reaction. It is proposed that the product in the first step contains no water and is cis-[Pt(NH3)2B]x+ in which the nucleobase is bidentate bonding through both N(7) of guanine and an oxygen atom of the phosphate group. 相似文献
10.
Summary Evaporation of a solution of thymidine plus either theexo or theendo diastereomer of uridine cyclic 2,3-O, O-phosphorothioate (U > p(S) in 1,2-diaminoethane hydrochloride buffer gave the 2,5 and 3,5 isomers of (P-thio) uridylylthymidine (Up(S)dT) in a ratio of 1:2 with a combined yield of about 20%. These isomers were re-converted to U > p(S) and dT by a reaction that is known to proceed by an in-line mechanism. Both the 2,5 and 3,5 isomers gave as product the same diastereomer of U > p(S) that had been used originally in their formation. These dry-state prebiotic reactions (Verlander, Lohrmann, and Orgel 1973) are thus shown to be stereospecific, and both the 2,5 and 3,5 internucleotide bonds are formed by an in-line mechanism.Abbreviations DAE
1,2-diaminoethane
- HPLC
high pressure liquid chromatography
- RNase
bovine pancreatic ribonuclease A, EC 3.1.4.22
- TEAB
triethylammonium bicarbonate
- tris
tris(hydroxymethyl)aminomethane
- UMP(S)
uridine monophosphorothioate
- U > p
uridine cyclic 2,3-phosphate
- U > p(S)
uridine cyclic 2,3-O, O-phosphorothioate
- Up(S)dT
(P-thio)uridylylthymidine
- U2p(Rp-S)5dT
(P-thio)uridylylthymidine with theR configuration at phosphorous, and a 2,5 internucleotide linkage 相似文献
11.
Leonid Beigelman Alexander Karpeisky Jasenka Matulic-Adamic Nassim Usman 《Nucleosides, nucleotides & nucleic acids》2013,32(3-5):421-425
Abstract Three different approaches to the synthesis of 2′-O-methyl nucleosides starting from the corresponding nucleoside or commercially available 1,2:5,6-di-O-isopropylidene-α-D-allofuranose 1 are described. 相似文献
12.
Daisuke Kaga Noriaki Minakawa Akira Matsuda 《Nucleosides, nucleotides & nucleic acids》2013,32(10-12):1789-1800
The synthesis of 2′-C-methyl-4′-thiocytidine (16) is described. Since the 2′-keto-4′-thiocytidine derivative 2β unexpectedly isomerized to 2α and the methylation of 2β proceeded predominantly from the less hindered α-face to give 7, the desired product 16 was synthesized via the Pummerer reaction of the sulfoxide 14 and N 4 -benzoylcytosine. 相似文献
13.
Igor A. Mikhailopulo Tamara M. Tsvetkova Grigorii G. Sivets Nicolai E. Poopeiko 《Nucleosides, nucleotides & nucleic acids》2013,32(6-7):1251-1252
Abstract Synthesis of 2′,3′-dideoxy-3′-C-(dihydroxyphosphinylmethyl)-adenosine and -thymidine 5, as well as of 2′-deoxy-2′-C-(dihydroxyphosphinylmethyl)-adenosine and -thymidine 9 was accomplished with the use of the universal carbohydrate precursor 3-deoxy-1,2;5,6-di-O-isopropylidene-3-C-(mesyloxymethyl)-α-D-allofuranose (1). 相似文献
14.
Danny P. C. McGee Chandra Vargeese Yansheng Zhai Gary P. Kirschenheuter Alecia Settle Colleen R. Siedem 《Nucleosides, nucleotides & nucleic acids》2013,32(6):1329-1339
Abstract The synthesis of 2′-amino-2′-deoxypyrimidine 5′-triphosphates is described. The 2′-amino-2′-deoxyuridine 5′-triphosphate is obtained from uridine in four steps with 25% overall yield. The 2′-amino-2′-deoxycytidine 5′-triphosphate is obtained from uridine in seven steps with 13% overall yield. 相似文献
15.
Darya S. Novopashina Olesya S. Totskaya Maria I. Meschaninova Dmitry A. Stetsenko Alya G. Venyaminova 《Nucleosides, nucleotides & nucleic acids》2013,32(6-7):821-825
We have developed a new method for the preparation of oligodeoxyribonucleotides and oligo(2′-O-methylribonucleotides) that contain a 2′-phosphorylated ribonucleoside residue, and optimized it to avoid 2′ -3′ -isomerization and chain cleavage. Structures of the 2′ -phosphorylated oligonucleotides were confirmed by MALDI-TOF MS and enzymatic digestion, and the stability of their duplexes with DNA and RNA was investigated. 2′-Phosphorylated oligonucleotides may be useful intermediates for the introduction of various chemical groups for a wide range of applications. 相似文献
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Abstract 2′-Azido-2′-deoxyuridine and 2′-azido-2′-deoxycytidine were evaluated for their inhibitory activity against ribonucleotide reductase and for subsequent cell growth inhibition. Their mono-and di-phosphates were synthesized and their inhibitory activities against the reductase were also determined in a permeabilized cell system, along with the two nucleosides. The results of the present study identify the first phosphorylation step involved in the conversion of the two azidonucleosides to the corresponding diphosphates to be rate-limiting in the overall activation. 相似文献
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Anilkumar R. Kore Bo Yang Balasubramanian Srinivasan Annamalai Senthilvelan 《Nucleosides, nucleotides & nucleic acids》2015,34(1):33-39
We describe concise and efficient synthesis of biologically very important 3′-O-tetraphosphates namely 2′-deoxyadenosine-3′-O-tetraphosphate (2′-d-3′-A4P) and 2′-deoxycytidine-3′-O-tetra-phosphate (2′-d-3′-C4P). N6-benzoyl-5′-O-levulinoyl-2′-deoxyadenosine was converted into N6-benzoyl-5′-O-levulinoyl-2′-deoxyadenosine-3′-O-tetraphosphate in 87% yield using a one-pot synthetic methodology. One-step concurrent deprotection of N6-benzoyl and 5′-O-levulinoyl groups using concentrated aqueous ammonia resulted 2′-d-3′-A4P in 74% yield. The same synthetic strategy was successfully employed to convert N4-benzoyl-5′-O-levulinoyl-2′-deoxycytidine into 2′-d-3′-C4P in 68% yield. 相似文献
20.
Takashi Utagawa Hirokazu Morisawa Shigeru Yamanaka Akihiro Yamazaki Yoshio Hirose 《Bioscience, biotechnology, and biochemistry》2013,77(9):2711-2717
The microbial synthesis of some purine 2′-amino-2′-deoxyribonucleosides from purine bases and 2′-amino-2′-deoxyuridine is described. Various bacteria, especially Erwinia herbicola, Salmonella schottmuelleri, Enterobacter aerogenes and Escherichia coli, were able to transfer the aminoribosyl moiety of 2′-amino-2′-deoxyuridine to purine bases (transaminoribosylation) in the presence of inorganic phosphate. The optimum conditions for the reaction were pH 7.0 and 63°C. No reaction was observed in the absence of inorganic phosphate and the optimum concentration of it was around 30 mm. Adenine, guanine, 2-chlorohypoxanthine and hypoxanthine were transformed to the corresponding 2′-amino-2′-deoxyribonucleosides by the catalytic activity of the wet cell paste of Enterobacter aerogenes AJ 11125. The enzymatically synthesized purine 2′-amino-2′-deoxyribonucleosides were isolated and identified by physicochemical means. 2′-Amino-2′-deoxyadenosine strongly inhibited the growth of Hela cells in tissue culture, and the ED50 was 2.5μ/ml. 相似文献