微生物诱导的植物系统抗性

综述了由植物病原菌和非病原性的根际促生菌诱导产生的两种植物系统抗性:系统获得性抗性(SAR)和系统诱导抗性(ISR),比较了两类系统抗性的诱导、信号分子和机理的异同点,阐述了信号分子水杨酸在系统获得性抗性诱导过程中的作用及茉莉酸和乙烯在系统诱导抗性产生过程中的作用。     

红树林区微生物资源

随着工业的迅猛发展,工业废料源源不断地向海洋输出,污染日趋严重。人们在大力开发海洋微生物自净能力的同时,也对海岸线的绿色卫士——红树林给予了密切关注,积极展开红树林区微生物资源的开发利用。本文从红树林区微生物库的资源多样性、微生物在物质循环和能量流动中的作用、生理活性物质、代谢产物和污染治理等几个方面进行综述。     

温州市境内城市河流底泥氨氧化菌富集培养物微生物群落结构分析

【背景】城市河流底泥含有丰富的微生物资源,底泥表面更是硝化作用的主要位点之一,其表面微生物在河流生态系统氮的转化过程中发挥着重要作用。【目的】以温州市境内的城市河流水系温瑞塘河茶山段舜岙河和横江河的4条河道作为采样点,比较分析4种不同环境下城市河流表层底泥氨氧化菌富集培养物的微生物群落结构。【方法】通过野外采样及室内培养对底泥中氨氧化功能菌进行富集培养,采用高通量测序技术分析微生物群落的组成、丰度和多样性。【结果】富集培养后主要优势类群为变形菌门(Proteobacteria)和拟杆菌门(Bacteroidetes)。4个样品共涉及氨氧化细菌3个属,分别为亚硝化单胞菌属(Nitrosomonas)、亚硝化螺菌属(Nitrosospira)、亚硝化球菌属(Nitrosococcus),涉及氨氧化古菌1个属为Nitrososphaera,其中所有样品均以Nitrosomonas为主。不同底泥富集样品氨氧化微生物可操作分类单元(Operational taxonomic unit,OTU)组成存在明显差异,栽种有水生植物的河道底泥样品DA2具有最高的氨氧化细菌OTU数量和相对丰度,而存在生活餐饮污染的河道底泥样品DA4具有最高的氨氧化古菌OTU数量和相对丰度;相较于滞留水体,采自相对流动水体的富集样品DA2、DA4具有更高的氨氧化微生物OTU数量和相对丰度。【结论】阐述了4种不同环境下城市河流底泥氨氧化菌富集培养物微生物群落结构的多样性,确定了富集培养之后的优势类群,为氨氧化微生物培养源的选择提供了参考,也为城市河流底泥中氨氧化菌进一步的筛选分离及其生理生态特征的研究提供了科学依据。     

微生物对植物源中药有效成分形成的影响

植物体内外生长着大量微生物,它们主要从表皮侵入植物体.植物识别侵入的微生物后,会形成次生代谢产物来抵抗微生物的侵入,这些代谢产物为我们提供了丰富的药源.血竭、沉香、皮用中药、组培生产药用成分及一些栽培中药中有效成分的形成都与微生物有密切关系.微生物在中药上的应用有很多问题急待解决,深入研究微生物对中药的影响对提高中药质量具有重要作用.     

固定化微生物处理氨氮废水的研究进展

生物方法因其高效、持久及无二次污染已经成为治理水污染的重要方法,固定化微生物不仅加强微生物治理效果,更能保证微生物生存稳定,是现阶段生物方法治理水污染的主要组分。近年来学者们也做了很多固定化微生物处理各类废水的研究,并取得了大量优异成果。文章对固定化微生物技术进行剖析,分析各类固定化载体材料及各种固定化方法优缺点;解析利用固定化微生物处理氨氮废水效果研究及固定化微生物处理效果影响因素;综述近年来固定化微生物处理氨氮废水应用情况;最后进行总结,并提出自己的展望。     

重度火烧迹地微地形对土壤微生物特性的影响——以坡度和坡向为例

通过对大兴安岭重度火烧迹地不同坡度和坡向的土壤微生物群落进行调查研究,旨在揭示重度火烧迹地过火6a后森林恢复过程土壤微生物群落的变化规律与影响因素.研究结果表明:平地土壤微生物生物量碳含量(MBC)和土壤微生物生物量碳氮比(MBC/MBN)均高于坡地,其中MBC/MBN达到差异极显著水平.平地土壤微生物的代谢活性AWCD值、对31种4类碳源(糖类、脂类、氨基酸、代谢物)的利用能力和Shannon-Winner多样性指数(H')均极显著低于坡地.西坡土壤微生物AWCD值和H'高于南坡,但AWCD和H'与土壤养分、pH值、EC无显著相关关系,说明坡向可能与土壤微生物代谢活性和多样性的关系并不密切,反映了两坡向土壤微生物群落结构的相似性.坡度由于影响了土壤养分和水分条件,进而影响了土壤微生物的生物量、群落结构、物种多样性和碳源利用能力.火烧迹地恢复初期平地土壤微生物量碳高于坡地,西坡高于南坡;恢复6a后,土壤微生物量碳的差异己不显著,但土壤微生物群落结构、物种多样性以及代谢特性仍具有显著差异,这可能与地形坡度仍然显著影响土壤水分含量的因素有关.     

非流体介质中多环芳烃污染的微生物固定化修复技术

非流体介质中多环芳烃(PAHs)污染的修复是目前环境工作者所面临的艰巨而紧迫的任务.由于非流体介质环境的特殊性,常规修复方法难以高效地发挥作用,传统微生物修复技术采用的游离微生物也存在许多弊端.而微生物固定化能大幅度地提高参加反应的微生物浓度,避免优势菌受土著菌的恶性竞争,增强微生物的耐环境冲击性.微生物固定化技术在一定程度上克服了传统工艺的不足,因而广泛应用于流体介质(废水等)和半流体介质(泥浆等)环境污染的修复.在概述固定化微生物技术的特点和分析国内外研究进展的基础上,指出将该技术应用于非流体介质中PAHs污染的原位修复领域的可行性,并论述了需要解决的关键科学问题,提出了利用微生物固定化技术修复非流体介质中PAHs污染的未来研究课题.     

海洋微生物酶研究进展

海洋中蕴含着丰富的微生物资源,海洋微生物逐渐成为新型酶制剂的重要来源。多种海洋微生物如细菌、放线菌和真菌能够产生活性酶。对海洋微生物来源的多糖酶、脂类水解酶、蛋白酶和漆酶等的研究进展进行了综述,以期为海洋微生物资源利用研究提供参考。     

Genome mining of the Streptomyces avermitilis genome and development of genome-minimized hosts for heterologous expression of biosynthetic gene clusters

To date, several actinomycete genomes have been completed and annotated. Among them, Streptomyces microorganisms are of major pharmaceutical interest because they are a rich source of numerous secondary metabolites. S. avermitilis is an industrial microorganism used for the production of an anthelmintic agent, avermectin, which is a commercially important antiparasitic agent in human and veterinary medicine, and agricultural pesticides. Genome analysis of S. avermitilis provides significant information for not only industrial applications but also understanding the features of this genus. On genome mining of S. avermitilis, the microorganism has been found to harbor at least 38 secondary metabolic gene clusters and 46 insertion sequence (IS)-like sequences on the genome, which have not been searched so far. A significant use of the genome data of Streptomyces microorganisms is the construction of a versatile host for heterologous expression of exogenous biosynthetic gene clusters by genetic engineering. Since S. avermitilis is used as an industrial microorganism, the microorganism is already optimized for the efficient supply of primary metabolic precursors and biochemical energy to support multistep biosynthesis. The feasibility of large-deletion mutants of S. avermitilis has been confirmed by heterologous expression of more than 20 exogenous biosynthetic gene clusters.     

微生物改善土体性能研究进展

土体中除含固体颗粒、液体与气体以外,还存在细菌、真菌等微生物,其存在势必会对土体性能产生一定作用。现有研究表明:微生物改善土体性能的机理是通过改变微观结构作用土体性能,主要有微生物吸附、诱导无机物沉淀、生物表面活性剂附着与气体填充等四种方式。微生物作用土体的宏观表现主要有降低渗透性与提高强度两方面。除理论分析与试验研究取得了一定成果外,微生物在土体封堵防渗与胶结加固工程上也得到了很好应用。     

Comparison between entrapment methods for phenol removal and operation of bioreactor packed with co-entrapped activated carbon and Pseudomonas fluorescence KNU417

A microorganism capable of degrading phenol was isolated from crude oil contaminated soil and identified as Pseudomonas fluorescence. A porous polymer bead of polyvinyl alcohol (PVA) and Xanthan gum was found to be the best entrapment for phenol degradation in terms of bead shape (spherical form), bead strength, non-agglomeration, phenol degradation rate, and cell holding inside the bead. Activated carbon was co-immobilized with the microorganism in the bead, which readily adsorbed phenol to decrease initial phenol concentration. Due to the decreased phenol concentration, the cells needed shorter adaptation time after which the microorganism stably degraded phenol. When the bead containing microorganism with 1% of activated carbon was packed in a packed-bed bioreactor, the start-up period was shortened by 40 h and the removal efficiency of phenol during the period was increased by 28% than the case with only microorganism.     

Study of fermentation behavior and formulation of a semidefined nutrient medium based on acid-production measurements in Z. mobilis cultures

Batch fermentations of glucose to ethanol by Z. Mobilis.(ATCC 10988) were examined in several semidefined nutrient media. The measurement of acid produced by the microorganism was used to study its transient fermentation characteristics. Limitation of nitrogen source in the semidefined medium of Rogers and coworkers(2) was found to limit the growth of this microorganism in the late stages of batch fermentations, when the initial glucose concentration was 75 g/L and higher. The microorganism exhibits a preference for inorganic nitrogen over preformed organic nitrogen provided by yeast extract. The microbial growth occurs exponentially in the presence of ammonium sulfate and yeast extract. However, in the absence of ammonium sulfate, the growth occurs in a linear fashion. The "linear" growth phase is characterized by poor cell-mass yields, and during this phase, growth and ethanol production are decoupled. An improved semi-defined growth medium is established which supports better growth rate and cellular yield, without affecting the ethanol yield.     

海绵共附生微生物的研究新进展

海绵是最原始的一类后生动物,已被作为海洋活性化合物的重要来源之一,其独特的孔状结构使其成为许多海洋微生物的优良宿主。近年来国内对海绵及其共附生微生物的研究主要集中在它们产生的活性物质方面,但对海绵共附生微生物的分布、多样性及其对宿主海绵作用的研究鲜有报道,就国内外研究进展进行了综述。     

MicroRNA调控固有免疫应答的分子机制

MicroRNA（miRNA）是近几年继siRNA之后非编码RNA研究的又一热点．它通过与靶mRNA的特异性结合,在转录后水平上对基因表达进行调控．研究表明,miRNA可能参与脊椎动物固有免疫应答的多个环节．在病原微生物感染时,它们不仅成为重要的固有免疫受体活化后的信号调节分子,而且能够直接干扰病毒复制而发挥抗病毒效应．miRNA可能与经典的固有免疫应答体系共同组成机体抵御病原微生物入侵的“第一道防线”．同时,病原微生物,特别是病毒还可以通过自己编码miRNA或者改变宿主细胞miRNA表达谱直接或间接地干扰很多宿主免疫相关基因的表达,实现逃逸机体免疫清除的目的．因此,miRNA水平的相瓦作用可能是病原微生物与其宿丰展开免疫“博弈”的重要战场．     

Large-scale production of diesel-like biofuels – process design as an inherent part of microorganism development

Industrial biotechnology is playing an important role in the transition to a bio-based economy. Currently, however, industrial implementation is still modest, despite the advances made in microorganism development. Given that the fuels and commodity chemicals sectors are characterized by tight economic margins, we propose to address overall process design and efficiency at the start of bioprocess development. While current microorganism development is targeted at product formation and product yield, addressing process design at the start of bioprocess development means that microorganism selection can also be extended to other critical targets for process technology and process scale implementation, such as enhancing cell separation or increasing cell robustness at operating conditions that favor the overall process. In this paper we follow this approach for the microbial production of diesel-like biofuels. We review current microbial routes with both oleaginous and engineered microorganisms. For the routes leading to extracellular production, we identify the process conditions for large scale operation. The process conditions identified are finally translated to microorganism development targets. We show that microorganism development should be directed at anaerobic production, increasing robustness at extreme process conditions and tailoring cell surface properties. All the same time, novel process configurations integrating fermentation and product recovery, cell reuse and low-cost technologies for product separation are mandatory. This review provides a state-of-the-art summary of the latest challenges in large-scale production of diesel-like biofuels.     

Antibiotic production by Streptomyces aureofaciens using self-cycling fermentation

The self-cycling frementation (;rSCF) technique was applied to culture of Streptomyces aureofaciens. SCF is a method of continuous fermentation in which the metabolism of a microorganism is monitored by a measurement such as dissolved oxygen. These data are sent to a computer to allow it to control the system. Tetracycline production was observed only at exceedingly low iron concentrations in the growth medium. Repeatability of cycles was found to be dependent upon the presence of tetracycline in the fermentation broth as well as the strain of microorganism grown in the fermentor. Tetracycline was produced by an improved specific rate when compared to results in the literature for this organism grown using the batch method. (c) 1994 John Wiley & Sons, Inc.     

生长素在微生物调控根发育过程中的作用

很多微生物通过分泌生长素和生长素前体与植物建立了有益的关系并改变植物根系的形态结构,此外,微生物分泌的其他代谢产物也能改变植物生长素信号通路。因此,生长素和生长素信号通路在微生物调控植物根系发育的过程中起着至关重要的作用。该文从生长素合成、生长素信号和生长素极性运输3个方面总结了生长素在微生物调控植物根系发育过程中的作用,主要包括微生物增加了植物内源生长素的含量、增强了生长素的信号和调控PIN蛋白的表达水平,进而如何调控植物生理和分子水平来适应微生物对其根系的改变,为进一步开展该方面的研究奠定了基础。     

Modeling and simulation of competition between two microorganisms for a single inhibitory substrate in a biofilm reactor

A simple biofilm model was developed to simulate the competition between two microorganisms for a common inhibitory substrate. The following assumptions were made for the simulations: (1) the biofilm has a uniform thickness and is composed of 5 segments, (2) growth of two microorganisms A and B which utilize the common substrate is expressed by the Haldane kinetics with a spatial limitation term and is independent of the other microorganism in the biofilm reactor, and (3) diffusion of the substrate, movement of the microorganisms, and continuous loss of the biomass by shearing are expressed by Fick's Law-type equations. The qualitative behavior of the biofilm reactor is characterized by five regions, I-V, depending on the operation conditions, the substrate concentration in feed, and the dilution rate. In region I, both microorganisms are washed out of the biofilm reactor. In region II, microorganism B is washed out, and in region III, microorganism A is washed out of the biofilm. In region IV, both microorganisms coexist with one another. In region V, both microorganisms coexist with a sustained oscillatory behavior. Convergence to regions I-V depends on the initial conditions. In regions II-V, washout of either or both microorganisms is also observed with initial conditions too far away.     

A long wavelength solution for a microorganism swimming in a channel

The hydrodynamics of a microorganism swimming in a channel is investigated. The microorganism is modeled as a two-dimensional sheet swimming at low Reynolds numbers between two rigid walls. The wavelengths of the propulsive waves passing down the sheet are assummed to be very large compared to the channel spacing, but the amplitude of the propulsive waves is arbitrary. Explicit analytical solutions for the propulsive velocity and the rate of energy dissipated in terms of the wave amplitude, channel spacing, wave number, and wave speeds are given.     

食源微生物对季铵盐类消毒剂的抗性

季铵盐类消毒剂基于其高效低毒的杀菌效果,在食品加工、畜牧养殖、公共场所消毒各个方面得到广泛的应用,但是滥用消毒剂会使环境、工农业相关产品中的耐药菌大量产生。本文对国内外关于微生物对季铵盐类消毒剂的抗性概况、耐药基因及其表达产物的特征,以及相应的研究理论和方法进行了综述。