Marine Foraging Birds As Bioindicators of Mercury in the Gulf of Maine

From existing databases, we compiled and evaluated 604 total mercury (Hg) levels in the eggs and blood of 17 species of marine foraging birds from 35 Gulf of Maine islands to provide baseline data and to determine the best tissue, age class, and species for future biomonitoring. While mean Hg levels in most species did not exceed adverse effects thresholds, levels in some individual eggs did; for all species arithmetic mean egg Hg levels ranged from 0.04 to 0.62 (μg/g, wet weight). Piscivorous birds had higher Hg levels than invertivores. Leach’s storm-petrel (Oceanodroma leucorhoa), razorbill (Alca torda), and black guillemot (Cepphus grylle) adult blood and egg Hg levels were higher than other species. Our results indicate that adult blood is preferable to chick blood for detecting long-term temporal trends because adult levels are higher and not confounded by metabolic effects. However, since we found that eggs and adult blood are comparable indicators of methylmercury bioavailability, we determined that eggs are the preferred tissue for long-term Hg monitoring because the relative ease in collecting eggs ensures consistent and robust datasets. We suggest specific sampling methods, and based on our results demonstrate that common eider (Somateria mollissima), Leach’s storm-petrel, double-crested cormorant, and black guillemot are the most effective bioindicators of Hg of the Gulf of Maine.     

Atlantic bluefin tuna in the Gulf of Maine,II: precision of sampling designs in estimating seasonal abundance accounting for tuna behaviour

A primary challenge of animal surveys is to understand how to reliably sample populations exhibiting strong spatial heterogeneity. Building upon recent findings from survey, tracking and tagging data, we investigate spatial sampling of a seasonally resident population of Atlantic bluefin tuna in the Gulf of Maine, Northwestern Atlantic Ocean. We incorporate empirical estimates to parameterize a stochastic population model and simulate measurement designs to examine survey efficiency and precision under variation in tuna behaviour. We compare results for random, systematic, stratified, adaptive and spotter-search survey designs, with spotter-search comprising irregular transects that target surfacing schools and known aggregation locations (i.e., areas of expected high population density) based on a priori knowledge. Results obtained show how survey precision is expected to vary on average with sampling effort, in agreement with general sampling theory and provide uncertainty ranges based on simulated variance in tuna behaviour. Simulation results indicate that spotter-search provides the highest level of precision, however, measurable bias in observer-school encounter rate contributes substantial uncertainty. Considering survey bias, precision, efficiency and anticipated operational costs, we propose that an adaptive-stratified sampling alone or a combination of adaptive-stratification and spotter-search (a mixed-layer design whereby a priori information on the location and size of school aggregations is provided by sequential spotter-search sampling) may provide the best approach for reducing uncertainty in seasonal abundance estimates.

The annual gametogenic cycle of the sea anemone Metridium senile from the Gulf of Maine

A year-long study was conducted to quantify the reproductive cycle of the clonal sea anemone, Metridium senile, an important member of the benthic community in the Gulf of Maine (GOM). M.senile is an abundant sessile invertebrate that forms identifiable clonal aggregations that are maintained by pedal laceration but individuals can also reproduce sexually. Specimens were collected monthly from a shallow (< 10 m) subtidal site and the reproductive cycle of male and female anemones was described on a seasonal basis using histological preparation of the gonads and light microscopy. Gametogenesis was determined for both sexes and showed that females undergo spawning during the seasonal transition from summer to fall, while males have mature sperm within testicular cysts in the winter, spring, and summer. Environmental data recorded at the study site shows that the spawning period occurs during a period of peak water temperature (August-September), and rapid gametogenesis occurs during periods of high food availability (April). The low percentage of reproductively mature anemones and the dominance of asexual reproduction in this population are believed to be the result of the high flow regime at this site.     

Molecular quantification of toxic Alexandrium fundyense in the Gulf of Maine using real-time PCR

The toxic dinoflagellate Alexandrium fundyense is widespread in the northeastern part of North America, including the Gulf of Maine, and is responsible for seasonal harmful algal blooms in these regions. Even at low cell densities, A. fundyense toxins can accumulate in shellfish and result in paralytic shellfish poisoning (PSP). PSP can be debilitating or lethal to humans and other shellfish consumers and is a public health concern. As a result, accurate measurements of A. fundyense distributions, particularly at low cell density, are critical to continued PSP monitoring and mitigation efforts. Towards this end we have developed a real-time quantitative PCR (qPCR) method to monitor A. fundyense. Laboratory validation indicates that the qPCR assay is sensitive enough to detect 10 cells per sample, and that it does not detect co-occurring dinoflagellates such as Alexandrium ostenfeldii. The qPCR methodology was used to quantify A. fundyense cell densities in samples collected during a spring 2003 transect in the Gulf of Maine, and the data were compared to those obtained in parallel from light microscope and DNA hybridization-based methods. Results show that A. fundyense cell density was low during this period relative to typical cell densities required for PSP contamination of local shellfish, and that qPCR values were comparable to numbers determined by independent methods.     

Vagile macrofauna and the hydrographic environment of the Saco River Estuary and adjacent waters of the Gulf of Maine

We studied the vagile epibenthic and nektonic macrofauna and hydrographic environments of the Saco River estuary and adjacent waters, including Biddeford Pool lagoon and Saco Bay (Gulf of Maine), over a 3-year period (1979–82). Twice as many species of vagile macrofauna were found in Saco Bay as in the estuarine environments, and none were found at the head of the estuary below the dam. Field distributions of various species and life stages agreed with their locomotor responses in the laboratory to physicochemical gradients, supporting the view that habitat correlations are at least in part determined by active habitat preference and/oor avoidance behavior of vagile species. We also examined the stomach contents of specimens of two common fish species to determine their local feeding habits. Yearling Pollachius virens fed primarily on Ammodytes americanus, while yearling Pseudopleuronectes americanus stomachs contained primarily small, whole Echinarachnius parma.     

The Asian red seaweed <Emphasis Type="Italic">Grateloupia turuturu</Emphasis> (Rhodophyta) invades the Gulf of Maine

We report the invasion of the Gulf of Maine, in the northwest Atlantic Ocean, by the largest red seaweed in the world, the Asian Grateloupia turuturu. First detected in 1994 in Narragansett Bay, Rhode Island, south of Cape Cod, this alga had expanded its range in the following years only over to Long Island and into Long Island Sound. In July 2007 we found Grateloupia in the Cape Cod Canal and as far north (east) as Boston, Massachusetts, establishing its presence in the Gulf of Maine. Grateloupia can be invasive and may be capable of disrupting low intertidal and shallow subtidal seaweeds. The plant's broad physiological tolerances suggest that it will be able to expand possibly as far north as the Bay of Fundy. We predict its continued spread in North America and around the world, noting that its arrival in the major international port of Boston may now launch G. turuturu on to new global shipping corridors.     

Distribution and long-term temporal patterns of four invasive colonial ascidians in the Gulf of Maine

Invasive ascidians are a growing concern for ecologists and natural resource managers, yet few studies have documented their short- and long-term temporal patterns of abundance. This study focuses on the invasion of the Gulf of Maine by the colonial ascidians Botryllus schlosseri, Botrylloides violaceus, Diplosoma listerianum and Didemnum sp. A. We examined the time of arrival and potential vectors for these four invasive ascidians using survey data (collected from 1969 onwards) and literature documentation. We also compared the dominance and seasonal patterns of abundance of these species using data from two identical panel studies; one conducted from 1979 to 1980, the other from 2003 to 2005. Didemnum and Botrylloides were most likely first introduced into the Damariscotta River, Maine in the early 1970's through oyster aquaculture while Botryllus and Diplosoma were probably transported by commercial and recreational vessels. The overall abundance of colonial ascidians has increased since 1979 and 1980. Botryllus was the only invasive colonial ascidian present during the 1979 to 1980 study and accounted for an average of 6.16% cover on panels. From 2003 to 2005, the more recently arrived colonial ascidians Botrylloides and Didemnum accounted for 7.38% and 2.08% cover respectively, while Botryllus covered only 1.16%. Our results reveal a shift in seasonal abundance between 1979 to 1980 and 2003 to 2004. In 1979 and 1980, colonial ascidians had the highest percent cover in fall and winter while in 2003 and 2005 they had highest percent cover in summer and fall. Seasonal patterns of space occupation by colonial ascidians were correlated with seasonal changes in seawater temperature.     

Impact assessment of an invasive flatworm, Convoluta convoluta, in the Southern Gulf of Maine

Convoluta convoluta (Abildgaard 1806) is a small (2-3 mm long) acoellous turbellarian flatworm from Europe that has invaded the Gulf of Maine within the last 5 years. Although it has been reported in densities of up to 19 individuals/cm², its ecological impact remains unknown. In its native habitat, it consumes harpacticoid copepods and primary settling mussels <0.5-mm shell length. This study estimated the impact of C. convoluta on juvenile blue mussel populations (Mytilus edulis Linnaeus 1758) around the Isles of Shoals in the southern Gulf of Maine, USA as well as looking at their distribution in their new habitat. We surveyed worm densities at sites of differing wave exposure over three substrates (hard substrates, bladed algae, filamentous algae) to quantify patterns of worm abundance. We found worms on all substrate types with their highest abundances occurring in areas of maximal sunlight exposure and minimal physical disturbance. We showed a definite pattern of consumption of mussels in the lab and found C. convoluta to consume up to 35% of primary settling mussels in the field, but only under certain conditions. Per capita impact on juvenile mussels was found to vary greatly in correlation with mussel recruitment rate and water temperature, but not with the consumption of harpacticoids. Our results also suggested that per capita interaction strength was reduced by intraspecific density-dependent competition and water temperature. The overall impact of C. convoluta on mussel populations in the southern Gulf of Maine is therefore estimated to be minimal.     

Importance of Shallow Water Habitats for Demersal Fishes and Decapod Crustaceans in Penobscot Bay, Maine

We characterized demersal fish and decapod crustacean habitats in 14 shallow (< 12m) areas in Penobscot Bay, Maine, by mapping the distribution of subtidal substrata with an acoustic sea bottom profiler. We identified the aquatic vegetation and the fishes and decapods associated with these habitats. Samples of fishes and decapods in each habitat were collected with a small beam trawl. The seabed at most of the stations sampled was composed of a mosaic of substrata. More species of fishes tow^-1 and higher abundances of fishes and decapods were found in stations with vegetation present, particularly eelgrass, Zostera marina. Decapod species richness tow^-1 was similar between vegetated and unvegetated habitats. Shallow habitats in Penobscot Bay were dominated by juvenile fishes and function as nursery areas. The greater species diversity and higher abundances of epibenthic fishes and decapod crustaceans observed in vegetated habitats, particularly beds of Zostera marina, compared with unvegetated areas in Penobscot Bay conform to the hypothesis that increased habitat complexity results in increased species richness and abundance.The first author is also senior author     

A new timeframe for the diversification of Japan’s mammals

Aim The main Japanese islands are land‐bridge islands divided by the biogeographic division Blakiston’s Line and represent two natural laboratories for studying land‐bridge diversification. Colonization of the current mammal fauna has been dated to the middle to late Pleistocene using fossil evidence. The purpose of this paper is to apply a molecular clock to the genetic divergences between Japanese mammalian taxa and their sister mainland taxa to test the late Pleistocene land‐bridge colonization hypothesis. Location The main Japanese islands (Kyushu, Shikoku, Honshu and Hokkaido). Methods I used mitochondrial DNA (cytochrome b) and a species tree approach to estimate the divergence times of 24 Japanese non‐volant terrestrial mammal taxa and their mainland sister taxa using the program *beast . I then tested for evidence of non‐simultaneous divergence among these taxon‐pairs by controlling for expected coalescent stochasticity using the program Ms Bayes . Results Divergence events between taxa on Japan and their mainland sister taxa were significantly older than expected under the current paradigm, which is based on fossil data. Consistent with the land‐bridge colonization hypothesis, there was evidence of multiple divergence events. Main conclusions These results implicate a colonization timeframe that is older than posited by the current paradigm based on fossil evidence. However, these results are still consistent with the land‐bridge colonization hypothesis. Multiple periods of land‐bridge connectivity may account for the current mammalian fauna in Japan. In addition, half of the divergence time estimates in the Honshu–Shikoku–Kyushu region were clumped around 2.4 Ma, which might suggest a dramatic interchange period, concordant with a period of significant global cooling, when the first land bridge may have connected Japan to the mainland.     

A test of two hypotheses explaining the seasonality of reproduction in temperate mammals

1. Two proposed hypotheses about energy allocation were tested to explain the patterns of seasonal reproduction found in temperate mammals. The two hypotheses predict either that total demand for energy is greater during reproduction than during winter (when thermoregulatory costs are high) (Increased Demand Hypothesis) or that total costs during winter are greater than or equal to total costs during reproduction (Reallocation Hypothesis).
2. Data were compiled from the literature on summer (non-reproducing) and winter metabolic rates of temperate mammals, and were used on litter sizes and a published equation to predict metabolic rates during lactation.
3. All three measures of metabolic rate scaled to body mass with slopes significantly less than one. Metabolic rates during winter averaged ≈ 2 times greater than those of non-reproducing mammals during summer. On average, predicted metabolic rates during lactation were not significantly greater than during winter, but for some individual species they clearly were.
4. It is suggested that neither the Reallocation nor the Increased Demand Hypothesis can fully explain seasonal reproductive patterns in temperate mammals.     

Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico

Methanotrophs are ubiquitous in soil, fresh water and the open ocean, but have not been well characterized in deep-sea hydrocarbon seeps and gas hydrates, where methane is unusually abundant. Here we report the presence of new functional genes for the aerobic oxidation of methane by methanotrophs in marine sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico. Samples were collected from two hydrate locations (GC185 and GC234): one hydrocarbon-seep location at a brine pool (GC233) and one background-marine location about 1.2 miles north of the brine pool (NBP). Community DNA was extracted from each location to establish clone libraries for the pmoA functional gene using a PCR-based cloning approach. Three hundred and ninety clones were screened by sequencing and 46 operational taxonomic units were obtained. Eight operational taxonomic units were present in every sample; one of them was predominant and accounted for 22.8-25.3% of each clone library. Principal-component analysis indicated that samples GC185 and GC234 were closely related and, along with GC233, were significantly different from NBP. These results indicate that methanotrophic communities may be similarly impacted by hydrocarbons at the gas-hydrate and seep sites, and can be distinguished from methanotrophic communities in the normal marine sediment. Furthermore, cluster analysis showed that 84.8% of operational taxonomic units from all samples formed distinct clusters, which could not be grouped with any published pmoA sequences, indicating that a considerable number of novel methanotrophic species may exist in the Gulf of Mexico.     

A Fuzzy Logic Model to Describe the Cyanobacteria Nodularia spumigena Blooms in the Gulf of Finland, Baltic Sea

A fuzzy logic model to describe the seasonal evolution of Nodularia spumigena blooms in the Gulf of Finland was built and calibrated on the basis of monitoring data. The model includes three phosphate sources: excess phosphate after the annual spring bloom and parameterised phosphate transport to the upper mixed layer by turbulent mixing and upwelling events. Surface layer temperature and wind mixing form the physical conditions controlling the growth of N. spumigena. Model simulations revealed that phosphate input caused by turbulent mixing and upwelling have to be taken into account to achieve the best fit with observed data. Testing the fuzzy model for early prediction of maximum N. spumigena biomass about a month before the usual occurrence of blooms, gave good results. The potential use of the model for prediction of bloom risk at a certain location along the Estonian or Finnish coast was tested. The bloom transport velocities used in the fuzzy model were pre-calculated by a 3D numerical circulation model for different wind regimes.     

Characterization of 13 microsatellite loci for the deep-sea coral, Lophelia pertusa (Linnaeus 1758), from the western North Atlantic Ocean and Gulf of Mexico

A suite of 13 polymorphic tri- and tetranucleotide microsatellite loci were isolated from the ahermatypic deep-sea coral, Lophelia pertusa. Among 51 individuals collected from three disjunct oceanic regions, allelic diversity ranged from six to 38 alleles and averaged 9.1 alleles per locus. Observed heterozygosity ranged from 9.1 to 96.8% and averaged 62.3% in the Gulf of Mexico population. For some loci, amplification success varied among collections, suggesting regional variation in priming site sequences. Four loci showed departures from Hardy-Weinberg equilibrium in certain collections which may reflect nonrandom mating.     

A new sponge-inhabiting amphipod species (Crustacea, Gammaridea, Sebidae) from the Veracruz Coral Reef System, southwestern Gulf of Mexico

A new species of the genus Seba Bate (Amphipoda: Sebidae) is described from the Veracruz Coral Reef System, Veracruz, south-western Gulf of Mexico. The specimens were found in association with a sponge, Ircinia fistularis, at depths from 8 to 10 m. Seba alvarezi n. sp. can be distinguished from closely related species mainly by the presence of a short, two-articulated accessory flagellum, three apical setae on article 3 of the mandible palp, and by the absence of apical setae on the inner lobe of maxilla 1. The new species is compared to closely related species in the family, and an identification key to the species of Seba known from the Gulf of Mexico and the Caribbean Sea is given.     

A new species of Amphictene (Annelida,Pectinariidae) from the Gulf of Mexico,with a redescription of Amphictene guatemalensis (Nilsson, 1928)

The genus Amphictene is reported for the first time from Mexico. Previous records for America are restricted to Brazil (Amphictene catharinensis) (Grube, 1870), and Guatemala (Amphictene guatemalensis) (Nilsson, 1928). In this paper we describe a new species, Amphictene helenae sp. n., characterized by the presence of three pairs of tentacular cirri, while other species have only two pairs. The new species is closely similar to Amphictene catharinensis, and can be distinguished by the presence of a circular group of glandular papillae inserted between the lines of glandular cirri present from the second segment. Amphictene guatemalensis is redescribed based on type material; it differs from the new species in the presence of two pairs of tentacular cirri on segments 1 and 2, six pairs of glandular cirri on the third segment, and four glandular lobes fused in pairs on the fourth segment.     

Sedimentological history of Bryant Canyon area, northwest Gulf of Mexico, during the last 135 kyr (Marine Isotope Stages 1-6): A proxy record of Mississippi River discharge

Bryant and Eastern Canyons are located in northwest Gulf of Mexico, and are characterized by a complex sedimentological history related to glacioeustatic cycles, river discharges, and interactions between depositional and halokinetic processes. This study is based on detailed sedimentological analysis from forty-eight long cores from these two canyons. This paper determines the evolutionary history of the canyons and assesses the response of sedimentary processes to morphological, climatic, hydrological, and sea-level changes.During the last glaciation, the upper and middle continental slope was supplied with sediments by low density turbidity currents derived from the depositional segregation (deposition of the coarsest material in the most proximal locations) of large turbidity currents initiated on the outer shelf. The lower continental slope was supplied with sediment by westward flowing bottom currents, originated from the entrainment of the most diluted wash-load and tails of turbidity currents from the Mississippi Fan.Bryant and Eastern Canyon systems were active during the penultimate glaciation, Marine Isotope Stage (MIS) 6, and were supplied with sediments by an ancestral shelf-margin Mississippi River delta. Gravity flows transported enormous amounts of sediment to the continental slope and abyssal plain of the northwest Gulf of Mexico. The sea-level rise at MIS 5 led to confinement of river-sourced sediments to the widespread continental shelf of the northwest Gulf of Mexico, and consequently to the cessation of gravity flows. During the first 40 kyr of MIS 5, salt diapirs transformed the canyons into a network of intraslope basins.The sea level dropped to the mid-shelf during MIS 3 and 4, but never reached the shelf-break, and therefore, river-sourced sediments remained largely confined to the shelf. However, seaward sediment transportation was achieved occasionally through turbidity currents related to sediment failures, storms, and high-river discharges. Four high river discharge events have been identified during this period. The first three were centred at 37, 45, and 53 cal ka BP. The last high river discharge occurred at the end of MIS 3 (29.4-33.2 cal ka BP), and resulted in the deposition of closely-spaced, mud turbidites over the entire continental slope. The Laurentide Ice Sheet (LIS) was restricted north of the upper Mississippi River valley during 60 to ∼ 30 cal ka BP and therefore, the high river discharge events are interpreted as melt-water events, related to brief southward advancements of the LIS, which resulted in the flooding of Mississippi River. The extensive lowering of sea level during the last glacial maximum (MIS 2) resulted in the almost direct discharge of Mississippi River sediments to the upper continental slope leading to the development of abundant turbidity currents. Eleven wet-dry cycles during this period are defined; they probably originated from episodic subglacial melt-water floods, released from southern parts of the LIS.The last deglaciation event is characterized by the development of a major melt water event at 16.5-13 cal ka BP that resulted in the deposition of distinct, organic-rich sediments. At about 13 cal ka BP, the melt water discharges of the LIS in North America switched from the Mississippi River to either the St. Lawrence or Mackenzie River valleys, causing the domination of hemipelagic sedimentation on the continental slope of the northwest Gulf of Mexico. Isotopic data indicate that melt-water discharges returned to the Mississippi River Valley at ∼ 11.4 cal ka BP. The absence of any sedimentological indication on the continental slope of the northwest Gulf of Mexico of the return of the melt-water discharges to the Mississippi River is attributed to the confinement of river-sourced sediments on the continental shelf due to the rise of the sea level.     

A protocol comparison for the analysis of heat shock protein A1B +A1538G SNP

Heat shock proteins act as molecular chaperones, assist in peptide maturation, and transport nascent peptides across membranes. One commonly studied single nucleotide polymorphism (SNP) for one of the proteins is HSPA1B (+A1538G). However, several studies of this polymorphism have failed to achieve Hardy–Weinberg equilibrium (HWE) for their sample. We compared various published procedures for analyzing the HSPA1B +A1538G SNP and report reasons for HWE discrepancies. Samples from 141 apparently healthy, physically active, volunteers (99 men and 42 women) were analyzed. The first protocol, initially described by Schröder et al., resulted in a genotypic distribution of 22 GG (15.6%), 119 AG (84.4%), and 0 AA; results were confirmed by reanalysis and sequencing. Two other published protocols, one described by Klausz et al. and another by Fekete et al., were used to confirm these results: both resulted in 22 GG (15.6%), 46 AA (32.6%), and 73 AG (51.7%). Additionally, the results were within HWE and confirmed by sequence analysis. Of the original 119 subjects genotyped as AG by the Schröder protocol, 46 of those were confirmed as AA with the Klausz and Fekete methods. Mixing primers from the Schröder and Klausz protocol resulted in 100% concordance with the data generated by the Klausz and Fekete protocols. Some published data on HSP genotyping deviate from HWE; thus, primers used for analyzing these highly homologous genes must be carefully considered. Our results highlight the importance of reinvestigating data when HWE is not achieved for the HSPA1B, or another, polymorphism.     

Optimisation of NMR dynamic models II. A new methodology for the dual optimisation of the model-free parameters and the Brownian rotational diffusion tensor

Finding the dynamics of an entire macromolecule is a complex problem as the model-free parameter values are intricately linked to the Brownian rotational diffusion of the molecule, mathematically through the autocorrelation function of the motion and statistically through model selection. The solution to this problem was formulated using set theory as an element of the universal set —the union of all model-free spaces (d’Auvergne EJ and Gooley PR (2007) Mol BioSyst 3(7), 483–494). The current procedure commonly used to find the universal solution is to initially estimate the diffusion tensor parameters, to optimise the model-free parameters of numerous models, and then to choose the best model via model selection. The global model is then optimised and the procedure repeated until convergence. In this paper a new methodology is presented which takes a different approach to this diffusion seeded model-free paradigm. Rather than starting with the diffusion tensor this iterative protocol begins by optimising the model-free parameters in the absence of any global model parameters, selecting between all the model-free models, and finally optimising the diffusion tensor. The new model-free optimisation protocol will be validated using synthetic data from Schurr JM et al. (1994) J Magn Reson B 105(3), 211–224 and the relaxation data of the bacteriorhodopsin (1–36)BR fragment from Orekhov VY (1999) J Biomol NMR 14(4), 345–356. To demonstrate the importance of this new procedure the NMR relaxation data of the Olfactory Marker Protein (OMP) of Gitti R et al. (2005) Biochem 44(28), 9673–9679 is reanalysed. The result is that the dynamics for certain secondary structural elements is very different from those originally reported. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.