Trophic relationships between planktonic bacteria,heterotrophic nanoflagellates and viruses in a mesoeutrophic reservoir

The abundance, biomass, and production (Р _В) of bacrerioplankton; the taxonomic composition, abundance, biomass of heterotrophic nanoflagellates (HNF) and the rate of consumption of bacteria by HNFs; and the abundance of virioplankton, frequency of visibly infected bacterial cells, virus-induced mortality of bacterioplankton, and viral production were estimated in the mesoeutrophic Rybinsk Reservoir. The rate of bacterial mortality due to viral lysis (7.8–34.1%, on average 17.2 ± 2.0% of daily Р _В) was lower than the consumption of bacteria by the HNF community (15.4–61.3%, on average 32.0 ± 4.2% of daily Р _В). While consuming bacteria, HNFs simultaneously absorbed a significant number of viruses residing on the surface and inside the bacterial cells.     

Modelling interactions between phytoplankton and bacteria under nutrient-regenerating conditions

The interactions of phytoplankton and bacteria in a nitrogen-limitedsteady-state system with an organic nitrogen compound or ammoniumas the sole nitrogen source were modelled. The effects of variousalgal excretion rates and two different mathematical representationsof excretion were examined. The model predicted that higherexcretion elevated the bacterial steady-state biomass, and loweredthe algal biomass. Bacterial respiration, which directly determinednitrogen regeneration, had an important effect on the system.The bacterial growth yield in the model was mainly a functionof the growth rate, and not of the nitrogen:carbon ratio ofthe substrate. In one version of the model, where the excretionof organic carbon increased with decreasing growth rate, themodel started to oscillate when the multiplication product ofmaximum specific excretion of excreted organic carbon (EOC)and the bacterial yield on EOC exceeded the dilution rate, irrespectiveof the form of nitrogen (ammonium or dissolved organic nitrogen)in the medium. The model results were compared with chemostatexperiments with the alga Emiliania huxleyi and a bacterialisolate in pure and mixed culture at two different dilutionrates. The carbon and nitrogen biomass of the bacteria was {smalltilde}1.5 times higher in mixed culture than in pure culture.In the experiments with low dilution rate, the recovery of nitrogenin the form of biomass, ammonium or amino acids was low, suggestingthe excretion by the algae of a refractory nitrogen-containingproduct which the bacteria could not use.     

Modelling interactions between phytoplankton and bacteria under nutrient-regenerating conditions

Two of the algal parameter values in Table II are incorrect.They should read: _a,o minimun algal N:C ratio 0.037 mol N/mol C _a,m maximum algal N:C ratio 0.133 mol N/mol C     

Gene transfer among bacteria under conditions of nutrient depletion in simulated and natural aquatic environments

Abstract Gene transfer among microorganisms has been well demonstrated in laboratory microcosms and in situ, under non-limiting nutrient conditions. The literature contains conflicting opinions, however, as to whether such processes could occur in the absence of nutrients. This review summarises the evidence for the occurrence of gene transfer by conjugation, transformation and transduction among non-growing bacteria in nutrient depleted environments. Conjugation by selftransmissible, or by non-selftransmissible but mobilisable, plasmids has been shown to occur among environmental isolates of Escherichia coli, Enterobacter cloacae, Pseudomonas aeruginosa and marine Vibrio strains. Transduction and transformation have been demonstrated in isolates of P. aeruginosa and marine Vibrio strains, respectively. It is possible that the mechanisms of these processes may be different in non-growing cells in nutrient depleted conditions, compared to those occurring in cells growing in rich media.     

Trophic interactions in soils as they affect energy and nutrient dynamics. III. Biotic interactions of bacteria,amoebae, and nematodes

Bacteria (Pseudomonas), amoebae (Acanthamoeba), and nematodes (Mesodiplogaster) were raised in soil microcosms with and without glucose additions. Nematode and amoebal grazing on bacteria significantly reduced bacterial populations by the end of a 24-day incubation period. Amoebal numbers decreased in the presence of nematodes with a corresponding increase in nematode numbers which reached a maximum of 230 nematodes/g of soil in the treatment with amoebae and glucose additions. After 24 days the nematode populations in the treatments without carbon additions were dominated by resistant dauer larvae indicating the unavailability of food. Although larval numbers were high in the treatments with glucose additions, the adult component of the population was still increasing at the end of the 24-day experiment. The effect of the presence of amoebae on nematode abundance was of the same magnitude as addition of 600g glucose-C.     

Agroclimatic conditions in Europe under climate change

To date, projections of European crop yields under climate change have been based almost entirely on the outputs of crop‐growth models. While this strategy can provide good estimates of the effects of climatic factors, soil conditions and management on crop yield, these models usually do not capture all of the important aspects related to crop management, or the relevant environmental factors. Moreover, crop‐simulation studies often have severe limitations with respect to the number of crops covered or the spatial extent. The present study, based on agroclimatic indices, provides a general picture of agroclimatic conditions in western and central Europe (study area lays between 8.5°W–27°E and 37–63.5°N), which allows for a more general assessment of climate‐change impacts. The results obtained from the analysis of data from 86 different sites were clustered according to an environmental stratification of Europe. The analysis was carried for the baseline (1971–2000) and future climate conditions (time horizons of 2030, 2050 and with a global temperature increase of 5 °C) based on outputs of three global circulation models. For many environmental zones, there were clear signs of deteriorating agroclimatic condition in terms of increased drought stress and shortening of the active growing season, which in some regions become increasingly squeezed between a cold winter and a hot summer. For most zones the projections show a marked need for adaptive measures to either increase soil water availability or drought resistance of crops. This study concludes that rainfed agriculture is likely to face more climate‐related risks, although the analyzed agroclimatic indicators will probably remain at a level that should permit rainfed production. However, results suggests that there is a risk of increasing number of extremely unfavorable years in many climate zones, which might result in higher interannual yield variability and constitute a challenge for proper crop management.     

Trophic interactions under climate fluctuations: the Atlantic puffin as an example

Co-occurrence in food requirements of offspring and food availability is a key factor determining breeding success. Prey availability is typically dependent on environmental conditions that are different from those influencing the predator''s decision regarding whether or not to initiate breeding, and is not always optimal at the peak of reproduction requirements. We investigated this relationship to understand better what determines the fledging success of the Atlantic puffin (Fratercula arctica). Colony data from Røst (northern Norway) covering a period of 27 years were analysed with parallel data on sea temperature and the size and abundance of the puffins'' main prey (the Norwegian spring-spawning herring, Clupea harengus). By fitting statistical models to the fledging success, we found that one effect of climate on this population of Atlantic puffins is indirect and mediated by sea temperature affecting the availability of first-year herring. The best model also demonstrates that the breeding success of the Røst puffins may be quantitatively predicted from the size of first-year herring and sea temperature.     

Relationship between bacteria, phytoplankton and heterotrophic nanoflagellates along the trophic gradient

Bacterial and heterotrophic nanoflagellates (HNF) abundance, as well as bacterial production and chlorophylla levels, were measured at five sites extending from the coastal zone toward the open Adriatic in the period from March to October 1995. The investigated areas were grouped into trophic categories according to concentrations of chlorophylla. All the biotic-para-meters increased along the trophic gradient, leading to eutrophy, but they did not increase at the same rate. The bacterial biomass: phytoplankton biomass (BB: chla) ratio decreased from about 10 in the very oligotrophic area to 0.8 at the eutrophic site. In contrast, the bacterial abundance: HNF abundance ratio (B: HNF) increased from 1000 bacteria per 1 flagellate in the oligotrophic system to 1700 bacteria flagellate⁴ in the eutrophic area. Decreasing BB: chla and increasing B: HNF ratios along the trophic gradient might reflect the different structures of the microbial food web. Relationships between bacterial abundance and production, and chla and HNF showed that bacterial abundance along the trophic gradient was regulated by the interplay between nutrient supply and grazing pressure. But in the oligotrophic system, bacterial abundance was more closely related to bacterial production and chla than in the eutrophic system, suggesting stronger control of bacterial abundance by substrate supply. On the other hand, the coupling between bacteria and HNF, and uncoupling between bacterial abundance and production in the eutrophic system, showed that the importance of bacteriovory increased in richer systems.     

Adaptation of a widespread epiphytic fern to simulated climate change conditions

The response of species to climate change is generally studied using ex situ manipulation of microclimate or by modeling species range shifts under simulated climate scenarios. In contrast, a reciprocal transplant experiment was used to investigate the in situ adaptive response of the elevationally widespread epiphytic fern Asplenium antiquum to simulated climate change conditions. Fern spores were collected at three elevations and germinated in a greenhouse. The sporelings (juvenile ferns) were reciprocally transplanted to each collection site. Growth and mortality rates were monitored for 2 years. Wild sporelings were monitored at two sites to assess possible transplant effects. Habitat suitability, indicated by overall growth and survival patterns, declined as elevation increased. Only the highland population showed significant adaptation to the “home” habitat, achieving the highest survival rates. Microclimate data suggest that the presumed genetic adaptation at the highland site occurred mainly in response to drought stress in winter. Based on our previous study on species distribution models, which projected an expansion in the range of A. antiquum under future climate change scenarios, the populations at the upper margins of the species’ elevational range may play an important role during this expansion, given their better adaptation to the shifting marginal conditions. Our study suggests that intraspecific variation should be considered when determining the potential impact of climate change on biodiversity.     

The dynamics of food chains under climate change and nutrient enrichment

Warming has profound effects on biological rates such as metabolism, growth, feeding and death of organisms, eventually affecting their ability to survive. Using a nonlinear bioenergetic population-dynamic model that accounts for temperature and body-mass dependencies of biological rates, we analysed the individual and interactive effects of increasing temperature and nutrient enrichment on the dynamics of a three-species food chain. At low temperatures, warming counteracts the destabilizing effects of enrichment by both bottom-up (via the carrying capacity) and top-down (via biological rates) mechanisms. Together with increasing consumer body masses, warming increases the system tolerance to fertilization. Simultaneously, warming increases the risk of starvation for large species in low-fertility systems. This effect can be counteracted by increased fertilization. In combination, therefore, two main drivers of global change and biodiversity loss can have positive and negative effects on food chain stability. Our model incorporates the most recent empirical data and may thus be used as the basis for more complex forecasting models incorporating food-web structure.     

Marine viruses and global climate change

Sea-surface warming, sea-ice melting and related freshening, changes in circulation and mixing regimes, and ocean acidification induced by the present climate changes are modifying marine ecosystem structure and function and have the potential to alter the cycling of carbon and nutrients in surface oceans. Changing climate has direct and indirect consequences on marine viruses, including cascading effects on biogeochemical cycles, food webs, and the metabolic balance of the ocean. We discuss here a range of case studies of climate change and the potential consequences on virus function, viral assemblages and virus-host interactions. In turn, marine viruses influence directly and indirectly biogeochemical cycles, carbon sequestration capacity of the oceans and the gas exchange between the ocean surface and the atmosphere. We cannot yet predict whether the viruses will exacerbate or attenuate the magnitude of climate changes on marine ecosystems, but we provide evidence that marine viruses interact actively with the present climate change and are a key biotic component that is able to influence the oceans' feedback on climate change. Long-term and wide spatial-scale studies, and improved knowledge of host-virus dynamics in the world's oceans will permit the incorporation of the viral component into future ocean climate models and increase the accuracy of the predictions of the climate change impacts on the function of the oceans.     

The interactions between Chlorella vulgaris and algal symbiotic bacteria under photoautotrophic and photoheterotrophic conditions

A Chlorella vulgaris ATCC 13482 culture was semi-continuously cultivated for 18 months in a 4-L photobioreactor and formed associated consortia with other symbionts. Three symbiotic bacterial strains were isolated on heterotrophic medium agar plates. Based on 16S rDNA analysis, they were found to show closest similarity to Pseudomonas alcaligenes, Elizabethkingia miricola and Methylobacterium radiotolerans. C. vulgaris was co-cultured with each bacterial strain, and it was found that the symbiotic bacterium Pseudomonas sp. had a growth-promoting effect on C. vulgaris while the other two inhibited algal growth. The interactions between C. vulgaris and Pseudomonas sp. were further investigated under different cultivation conditions. The co-culture resulted in 1.4 times greater algal cell concentration than that of C. vulgaris alone under photoautotrophic condition. In contrast, the algal cell concentration was lower in the co-culture compared with single algal culture when glucose was supplied in the medium (photoheterotrophic). Under both cultivation conditions, the number of Pseudomonas sp. increased at the beginning of experiment, and then decreased. However, the bacterial number decreased to almost zero under photoheterotrophic conditions, while the growth of bacteria went into a stationary phase under photoautotrophic conditions. The chlorophyll content in C. vulgaris cell was higher in co-culture than in single algal culture. Algal cells in photoautotrophic condition showed higher photosynthetic efficiency compared to those in photoheterotrophic condition. Extracellular organic carbon dissolved in the medium continuously increased under photoautotrophic condition. The mutualistic and competing relationships between C. vulgaris and symbiotic bacteria observed in this study could aid our understanding of algae–bacteria interactions in nature as well as broadening its practical applications.     

Dot assay for determining adhesive interactions between yeasts and bacteria under controlled hydrodynamic conditions

Different methods for cell disintegration were tested for their efficacy on filamentous fungi, including percussion grinding, homogenization using an Ultra-Turrax, chemical treatment and lyophylization. The release of protein from Ganoderma applanatum and Pycnoporus cinnabarinus and the activity of cytoplasmatic glucose-6-phosphate dehydrogenase in the crude extracts were monitored to determine the efficiency of each disintegration technique used. Fungal cells proved to be particularly resistant towards some disintegration methods commonly used for yeasts and bacteria. Best results were obtained using a percussion grinder, if necessary, in combination with an Ultra-Turrax pretreatment.     

Dot assay for determining adhesive interactions between yeasts and bacteria under controlled hydrodynamic conditions

Candida belongs to the normal human microflora and are found adhering to a number of human body tissues as well as to a variety of biomaterials implants. Often, yeasts adhere in association with bacteria, but to date there is no definitive assay to investigate adhesive interactions between yeasts and bacteria adhering on surfaces. Although we recently described the use of a parallel plate flow chamber to this purpose [Millsap, K.W., Bos, R., Van der Mei, H.C., Busscher, H.J., 1998. Adhesive interactions between medically important yeasts and bacteria. FEMS Microbiol. Rev. 21, 321–336], the method was slow and evaluation of a large number of strains showed major biological variation between experiments. Here, we describe a new assay for the simultaneous determination of the adhesive interactions between yeasts and different bacterial strains on a surface under controlled hydrodynamic conditions. On an acrylic surface, the presence of adhering bacteria suppressed adhesion of Candida albicans ATCC 10261 to various degrees, depending on the bacterial strain involved. Suppression of C. albicans ATCC 10261 adhesion was strongest by Actinomyces naeslundii T14V-J1, while adhering Streptococcus gordonii NCTC 7869 caused the weakest suppression of yeast adhesion. When adhering yeasts and bacteria were challenged with the high detachment force of a passing liquid–air interface, the majority of the yeasts detached, while C. albicans adhering on the control, bare polymethylmethacrylate surface formed aggregates. Summarizing, this study presents a new method to determine suggested adhesive interactions between yeasts and adhering bacteria under controlled hydrodynamic conditions. However, the results seem to indicate that these adhesive interactions may well not exist, but that instead different bacterial strains have varying abilities to discourage yeast adhesion.     

Trophic interactions among heterotrophic microplankton,nanoplankton, and bacteria in Lake Constance

A considerable portion of the pelagic energy flow in Lake Constance (FRG) is channelled through a highly dynamic microbial food web. In-situ experiments using the lake water dilution technique according to Landry & Hasset (1982) revealed that grazing by heterotrophic nanoflagellates (HNF) smaller than 10 µm is the major loss factor of bacterial production. An average flagellate ingests 10 to 100 bacteria per hour. Nano- and micro-ciliates have been identified as the main predators of HNF. If no other food is used between 3 and 40 HNF are consumed per ciliate and hour. Other protozoans and small metazoans such as rotifers are of minor importance in controlling HNF population dynamics.Clearance rates varied between 0.2 and 122.8 nl HNF^–1 h^–1 and between 0.2 and 53.6 µl ciliate^–1 h^–1, respectively.Ingestion and clearance rates measured for HNF and ciliates are in good agreement with results obtained by other investigators from different aquatic environments and from laboratory cultures. Both the abundance of all three major microheterotrophic categories — bacteria, HNF, and ciliates — and the grazing pressure within the microbial loop show pronounced seasonal variations.     

模拟降雨条件下典型土壤的可蚀性与养分流失特征

选取中国北方地区典型的沙土和壤土,基于8场人工模拟降雨实验,研究不同坡度(10°和20°)、不同雨强(60和120 mm·h-1)土壤可蚀性对速效氮(AN)及速效磷(AP)流失的影响。结果表明:壤土的土壤可蚀性大于沙土,较大的土壤可蚀性导致产流、产沙、AN及AP流失;产流速率和产沙速率呈线性相关,其线性回归方程的斜率可以表征土壤可蚀性(R20.398,P0.01);AN、AP的流失速率受产流及产沙速率的共同影响;土壤可蚀性对AN、AP流失速率的影响同样显著,其相关关系可以用对数函数表征。     

Trophic interactions in soils as they affect energy and nutrient dynamics. II. Physiological responses of selected rhizosphere bacteria

Comparative microbial functions in the plant root zone were studied by evaluating rhizosphere-derivedPseudomonas andArthrobacter growth in chemostat culture and responses to root-exudate-related nutrients after varied starvation periods. These organisms were chosen to represent zymogenous and autochthonous microbes, respectively. In chemostat culture, thePseudomonas isolate showed increased energy charge and decreased populations with higher growth rates, whereas theArthrobacter had lower energy charge and cell population values which did not change appreciably with growth rate. The responses of these two types of organisms also differed with starvation. ThePseudomonas lost its ability to respire efficiently in the presence of several known root exudate components, whereas theArthrobacter isolate, in comparison, maintained a lower but more consistent ability to utilize these nutrients with increased starvation. TheArthrobacter also showed increased utilization of several substrates after starvation, suggesting its potential ability to function under restricted nutrient availability conditions. These results suggest thatPseudomonas-type organisms in the rhizosphere may best function in periods of more intense exudate release, whereas organisms of theArthrobacter- type may be more efficient at nutrient utilization during periods of lesser nutrient flux. Based on these data the rhizosphere-derivedPseudomonas isolate was considered to be an appropriate bacterium to use in more complex rhizosphere microcosm experiments where nutrient flux dynamics would be emphasized.     

Trophic interactions between sensory nerves and their targets

Neurotrophins are target-derived trophic factors essential for the survival and maintenance of neurons. Among these, nerve growth factor (NGF) and neurotrophin-3 (NT-3) are particularly important for sensory neurons. The actions of neurotrophins are through the p75 low-affinity receptor and the high-affinity receptor tyrosine kinase(trk). Each neurotrophin has its preferred receptor, i.e.trkA for NGF, andtrkC for NT-3. The primary sensory neurons in the dorsal root ganglion are classified into two categories, namely, the large and small sensory neurons based on their size. The large sensory neurons with the expression oftrkC depend on NT-3 for development and subserve the function of position sensations. Some of the small sensory neurons expresstrkA and are NGF-dependent. They are responsible for nociceptive sensation, the detection of painful and thermal stimuli. A more intriguing observation is the bidirectional interactions between nociceptive nerves and their target, the skin. The peripheral processes of small sensory neurons innervate the epidermis of the skin as free nerve endings. In denervated skin, there is a drastic reduction in the epidermal thickness, a finding corroborated by the phenomenon of trophic change, the shining and thinning of the skin, in the disorders of peripheral nerves. The performance of animals with peripheral nerve disorders improved after administration of neurotrophic factors. Based on these results, the therapeutic potentials of neurotrophic factors in human are under investigation.