Diversity of Aerobic Methanotrophic Bacteria in a Permafrost Active Layer Soil of the Lena Delta,Siberia

With this study, we present first data on the diversity of aerobic methanotrophic bacteria (MOB) in an Arctic permafrost active layer soil of the Lena Delta, Siberia. Applying denaturing gradient gel electrophoresis and cloning of 16S ribosomal ribonucleic acid (rRNA) and pmoA gene fragments of active layer samples, we found a general restriction of the methanotrophic diversity to sequences closely related to the genera Methylobacter and Methylosarcina, both type I MOB. In contrast, we revealed a distinct species-level diversity. Based on phylogenetic analysis of the 16S rRNA gene, two new clusters of MOB specific for the permafrost active layer soil of this study were found. In total, 8 out of 13 operational taxonomic units detected belong to these clusters. Members of these clusters were closely related to Methylobacter psychrophilus and Methylobacter tundripaludum, both isolated from Arctic environments. A dominance of MOB closely related to M. psychrophilus and M. tundripaludum was confirmed by an additional pmoA gene analysis. We used diversity indices such as the Shannon diversity index or the Chao1 richness estimator in order to compare the MOB community near the surface and near the permafrost table. We determined a similar diversity of the MOB community in both depths and suggest that it is not influenced by the extreme physical and geochemical gradients in the active layer.     

Contribution of Old Growth Forests to the Carbon Budget of the Boreal Zone in Central Siberia

Old growth (mature and overmature) forests of Central Siberia accumulate carbon not only in the biomass but also in the phytodetritus, including in coarse woody debris (CWD), due to the slow seasonally depressed decomposition of organic matter. Slowly decomposing and accumulating on the soil surface stock of CWD, as a soil humus, serves as a long-term carbon pool in boreal forest ecosystems.     

The Effect of Seasonal Shifts in Temperature on the Lipid Composition of Marine Macrophytes

The comparative study of lipid composition was carried out in four species of marine algae, Ahnfeltia tobuchiensis, Laminaria japonica, Sargassum pallidum, and Ulva fenestrata, as well as a higher plant grass wrack (Zostera marina). Plants were collected in the Japan Sea in spring at 2.9 and 5.5°C and in summer at 23°C. The main lipid components of membranes were determined, and the general patterns of the ratio of phospholipids (PL), glycolipids (GL), betaine (BL), and neutral (NL) lipids were discerned. The relative content of NL in all species (except A. tobuchiensis) was higher in summer. The level of triacylglycerols was as high as 18–37%. The content of individual classes of PL and GL varied between the spring and summer samples, the relative content of PL being higher in spring. In most species, the ratio of PL to GL decreased in summer. The content of free sterols did not depend on the season. The molar ratios of phosphatidylcholine and diacylglycerol-o-(hydroxymethyl)-(N,N,N-trimethyl)homoserine to free sterols varied from 0.9 to 1.7. The seasonal changes of lipid composition were apparently related to macrophyte adaptation to water temperature and to biology of their development.     

Seasonal and spatial variability of elemental concentrations in boreal forest larch foliage of Central Siberia on continuous permafrost

We measured the seasonal dynamics of major and trace elements concentrations in foliage of larch, main conifer species of Siberia, and we analyzed cryogenic soils collected in typical permafrost-dominated habitats in the Central Siberia. This region offers a unique opportunity to study element fractionation between the soil and the plant because of (i) the homogeneous geological substratum, (ii) the monospecific stands (Larix gmelinii) and (iii) the contrasted habitats (North-facing slope, South-facing slope, and Sphagnum peatbog) in terms of soil temperature, moisture, thickness of the active layer, tree biomass and rooting depth. The variation of these parameters from one habitat to the other allowed us to test the effects of these parameters on the element concentration in larch foliage considered with high seasonal resolution. Statistical treatment of data on larch needles collected 4 times in 3 locations during entire growing season (June–September) demonstrated that : (1) there is a high similarity of foliar chemical composition of larch trees in various habitats suggesting intrinsically similar requirements of larch tree growth for nutrients, (2) the variation of elemental concentrations in larch needles is controlled by the period (within the growing season) and not by the geographical location (South-facing slope, North-facing slope or bog zone) and (3) there are three groups of elements according to their patterns of elements concentration in needles over the growing season from June to September can be identified: (1): nutrient elements [P, Cu, Rb, K, B, Na, Zn, Ni and Cd] showing a decrease of concentration from June to September similar to the behaviour of major nutrients such as N, P and K; (2): accumulating elements [Ca, Mg, Mo, Co, Sr, Mn, Pb and Cr] showing an increase of concentration from June–July to September; (3): indifferent elements [Al, Zr, Fe, Ba, Ti, REEs (Pr, Nd, Ce, La, Gd, Er, Dy, Tb, Lu, Yb, Tm, Sm, Ho, Eu), Y, Th and U] showing a decrease of concentration from June to July and then an increase of concentration to September. A number of micronutrients (e.g., Cu, Zn) demonstrate significant resorption at the end of growing season suggesting possible limitation by these elements. Although the intrinsic requirement seems to be similar among habitats, the total amount of element stored within the different habitats is drastically different due to the differences in standing tree biomass. The partitioning coefficients between soil and larch appear to be among the lowest compared to other environments with variable plants, soils and climates. Applying the “space for time” substitution scenario, it follows that under ongoing climate warming there will be an increase of the element stock following enhanced above-ground biomass accumulation, even considering zero modification of element ratios and their relative mobility. In this sense, the habitats like south-facing slopes can serve as resultant of climate warming effect on element cycling in larch ecosystems for the larger territory of Central Siberia.     

Soil functioning in foci of Siberian moth population outbreaks in the southern taiga subzone of Central Siberia

The results of experimental studies on the contribution of zoogenic debris to transformation of soil properties in the southern taiga subzone of Central Siberia are analyzed. They show that water-soluble carbon outflow from the forest litter increases by 21–26% upon a Siberian moth invasion, with this value decreasing to 14% one year later. The burning of forest in an area completely defoliated by the pest leads to changes in the stock, fractional composition, actual acidity, and ash element contents of the litter. The litter-dwelling invertebrate assemblage is almost completely destroyed by fire and begins to recover only after two years.     

Improving Estimations of Spatial Distribution of Soil Respiration Using the Bayesian Maximum Entropy Algorithm and Soil Temperature as Auxiliary Data

Soil respiration inherently shows strong spatial variability. It is difficult to obtain an accurate characterization of soil respiration with an insufficient number of monitoring points. However, it is expensive and cumbersome to deploy many sensors. To solve this problem, we proposed employing the Bayesian Maximum Entropy (BME) algorithm, using soil temperature as auxiliary information, to study the spatial distribution of soil respiration. The BME algorithm used the soft data (auxiliary information) effectively to improve the estimation accuracy of the spatiotemporal distribution of soil respiration. Based on the functional relationship between soil temperature and soil respiration, the BME algorithm satisfactorily integrated soil temperature data into said spatial distribution. As a means of comparison, we also applied the Ordinary Kriging (OK) and Co-Kriging (Co-OK) methods. The results indicated that the root mean squared errors (RMSEs) and absolute values of bias for both Day 1 and Day 2 were the lowest for the BME method, thus demonstrating its higher estimation accuracy. Further, we compared the performance of the BME algorithm coupled with auxiliary information, namely soil temperature data, and the OK method without auxiliary information in the same study area for 9, 21, and 37 sampled points. The results showed that the RMSEs for the BME algorithm (0.972 and 1.193) were less than those for the OK method (1.146 and 1.539) when the number of sampled points was 9 and 37, respectively. This indicates that the former method using auxiliary information could reduce the required number of sampling points for studying spatial distribution of soil respiration. Thus, the BME algorithm, coupled with soil temperature data, can not only improve the accuracy of soil respiration spatial interpolation but can also reduce the number of sampling points.     

First Data on Seasonal Changes in Feeding of the Amur Sleeper Perccottus glenii (Odontobutidae) in the South of West Siberia

Journal of Ichthyology - The data on feeding of the Amur sleeper Perccottus glenii in a pond located in the southern taiga subzone in West Siberia obtained in May–October 2017 are presented....     

The effect of various disturbing factors on the radial increment in pine forests of Central Siberia

The results of study of regeneration periods in pine forests after natural and anthropogenic disturbanses have been presented. It has been found that the rate of recovery depends on the type of disturbing factor. The differentiated effect of climatic factors (air temperature, amount of precipitation) on the growth rate of forests with different types of disturbances has been investigated.     

The Effect of Temperature on the Bioventing of Soil Contaminated with Toluene and Decane

The effect of temperature on evaporation and biodegradation rates during soil bioventing (SBV) was studied for a mixture of toluene and decane in bench-scale soil columns at a continuous air flow and consecutively at two different flow rates. The effect of temperature on SBV was monitored by GC headspace analysis of contaminant, CO₂ and O₂ concentrations in the soil gas over time. Separation of evaporation and biodegradation processes into three different phases based on their rates was used together with Q₁₀ and E₁₀ (values that give the factor by which biodegradation and evaporation rates increase when the temperature is raised by 10 degrees) to compare quantitatively the removal kinetics at 10 and 20°C. Adsorption of toluene and decane onto soil (a phase partitioning process) at 20 and 10°C was described with linear Freundlich isotherms. A temperature decrease from 20 to 10°C resulted in an increase of soil-air partitioning coefficients by a factor of 1.8 and of 2.1 for toluene and decane, respectively. The mean Q₁₀ value for the biodegradation of toluene was found to be 2.2 for a temperature rise from 10 to 20°C. A toluene content in the soil gas above 75% of the saturation concentration inhibited biodegradation at both temperatures. The SBV efficiency was dependent on temperature with respect to remediation time. SBV at 20°C resulted in a 99.8% and a 98.7% reduction of toluene and decane initial concentrations, respectively. To reach similar results at 10°C, about 1.6 times as much time and 1.4 times as much air were required; however, at both temperatures the total amounts of biodegraded hydrocarbons were approximately the same. The evaporation-to-biodegradation ratios at 20°C were 82.5:17.5 for toluene and 16:84 for decane, whereas at 10 °C they were 71:29 and 2:98, respectively. A comparison of Q₁₀ values showed that, except during the initial phase of SBV, only a modest decrease in biodegradation rates should be expected after a decrease in temperature from 20 to 10°C. Flow rate reduction had a significant impact on the toluene evaporation rate at a higher temperature, whereas for decane this rate was only slightly affected by temperature. In contrast to decane, the ratio between toluene vapor pressures at 20 and 10°C may be used to predict the removal of toluene by evaporation during the above-mentioned phases of SBV, when evaporation is important.     

Effect of Temperature on the Dispersion of 1,2-dibromo-3-chloropropane in Soil

A study was conducted to evaluate the effect of temperature on the dispersion of 1,2-dibromo-3-chloropropane (DBCP) in soil. The facility of solution of DBCP in water was also investigated. Results of these studies show that the movement of DBCP from an injection site is temperature dependent. These data also indicate that DBCP dissolves readily in water and that dissolved chemical serves to limit the rate of outward dispersion once the liquid DBCP which was added has changed state. The mechanics of DBCP dispersion following soil injection are discussed.     

Effect of Climate Change on Soil Temperature in Swedish Boreal Forests

Complex non-linear relationships exist between air and soil temperature responses to climate change. Despite its influence on hydrological and biogeochemical processes, soil temperature has received less attention in climate impact studies. Here we present and apply an empirical soil temperature model to four forest sites along a climatic gradient of Sweden. Future air and soil temperature were projected using an ensemble of regional climate models. Annual average air and soil temperatures were projected to increase, but complex dynamics were projected on a seasonal scale. Future changes in winter soil temperature were strongly dependent on projected snow cover. At the northernmost site, winter soil temperatures changed very little due to insulating effects of snow cover but southern sites with little or no snow cover showed the largest projected winter soil warming. Projected soil warming was greatest in the spring (up to 4°C) in the north, suggesting earlier snowmelt, extension of growing season length and possible northward shifts in the boreal biome. This showed that the projected effects of climate change on soil temperature in snow dominated regions are complex and general assumptions of future soil temperature responses to climate change based on air temperature alone are inadequate and should be avoided in boreal regions.     

The Effect of Temperature and Aeration Rate on Bioremediation of Diesel-contaminated Soil in Solid-phase Bench-scale Bioreactors

Bioremediation of hydrocarbon (HC) contaminated soils is most effective in aerobic conditions. Despite the fact that mass transfer of oxygen is an important process parameter, the effect of this parameter on solid-phase bioremediation has received limited attention. In this study, the combined effect of temperature and aeration on the bioremediation of low organic content coarse-grained soils, freshly contaminated with diesel, was investigated in solid-phase bench-scale bioreactors. Total HC and carbon range soil concentrations, volatilization, and microbial activity were monitored throughout the six-month experiments at two temperatures (7 and 22°C) and at two aeration rates (13 and 45 mL·s^?1). Total HC removal reached between 48 and 83%. Generally, removal increased proportionally with temperature and aeration rates, and decreased proportionally with HC compounds molecular weight. Both biodegradation and volatilization played important roles in removal in all treatments. The high aeration rate enhanced microbial activity in soil. Enhancement was believed to be due to increased mass transfer of oxygen from the soil gas to the soil solution, where microbial activity occurs. However, high aeration also enhanced volatilization, especially at 22°C where 51% of HCs were lost to volatilization. High aeration rate enhanced biodegradation of compounds > nC15 without promoting their excessive volatilization.     

Effect of Moisture and Temperature on the Survival of Sclerotia of Sclerotium rolfsii in Soil

The sclerotia of Sclerotium rolfsii Sacc. survived in natural soil for 225 days under controlled moisture at 50% water holding capacity (WHC) after which there was a progressive reduction in the population of viable sclerotia. At 390 days only 48% were recovered. Sclerotia survived well at moisture contents upto 75% WHC but at 100% the population declined rapidly and none were recovered after 60 days. The contents of the sclerotia were found to lyse without germination leaving hollow rinds. Such lysis was found to be favoured between 25 and 40°C. At and below 20°C no such lysis was recovered and more than 80% sclerotia were recovered even after 60 days.     

Effect of Temperature on the Taxonomic Structure of Soil Bacterial Communities during Litter Decomposition

Microbiology - Effect of temperature on succession changes of the saprotrophic bacterial community of gray forest soil in the course of decomposition of aspen leaves and branches was studied in...     

The Effects of Permafrost Thaw on Soil Hydrologic, Thermal, and Carbon Dynamics in an Alaskan Peatland

Recent warming at high-latitudes has accelerated permafrost thaw in northern peatlands, and thaw can have profound effects on local hydrology and ecosystem carbon balance. To assess the impact of permafrost thaw on soil organic carbon (OC) dynamics, we measured soil hydrologic and thermal dynamics and soil OC stocks across a collapse-scar bog chronosequence in interior Alaska. We observed dramatic changes in the distribution of soil water associated with thawing of ice-rich frozen peat. The impoundment of warm water in collapse-scar bogs initiated talik formation and the lateral expansion of bogs over time. On average, Permafrost Plateaus stored 137 ± 37 kg C m⁻², whereas OC storage in Young Bogs and Old Bogs averaged 84 ± 13 kg C m⁻². Based on our reconstructions, the accumulation of OC in near-surface bog peat continued for nearly 1,000 years following permafrost thaw, at which point accumulation rates slowed. Rapid decomposition of thawed forest peat reduced deep OC stocks by nearly half during the first 100 years following thaw. Using a simple mass-balance model, we show that accumulation rates at the bog surface were not sufficient to balance deep OC losses, resulting in a net loss of OC from the entire peat column. An uncertainty analysis also revealed that the magnitude and timing of soil OC loss from thawed forest peat depends substantially on variation in OC input rates to bog peat and variation in decay constants for shallow and deep OC stocks. These findings suggest that permafrost thaw and the subsequent release of OC from thawed peat will likely reduce the strength of northern permafrost-affected peatlands as a carbon dioxide sink, and consequently, will likely accelerate rates of atmospheric warming.     

The Adjustment of the Circadian Rhythm of Body Temperature to Simulated Time-Zone Transitions: A Comparison of the Effect of Using Raw Versus Unmasked Data

Deep body temperature and sleep/activity diaries data were recorded during control days and for 6 days after simulated time zone transitions of 8 h to the east (six subjects) or west (seven subjects). Circadian rhythms were assessed by cosinor analysis of both raw data (the conventional method) and purified data (corrected for the effects of sleep and activity). Analysis of raw data gives misleading information about the phase and amplitude of the rhythms due to the masking effects of the exogenous component. Use of purified data indicates that during the process of adjustment after an eastward shift (a) phase changes are more erratic than after a shift to the west; (b) no marked decrease in the amplitude of the rhythms is evident; and (c) no clear evidence exists that the circadian rhythm breaks up temporarily. The masking effect was less after the time zone transition if sleep maintenance was poor.     

The Adjustment of the Circadian Rhythm of Body Temperature to Simulated Time-Zone Transitions: A Comparison of the Effect of Using Raw Versus Unmasked Data

Deep body temperature and sleep/activity diaries data were recorded during control days and for 6 days after simulated time zone transitions of 8 h to the east (six subjects) or west (seven subjects). Circadian rhythms were assessed by cosinor analysis of both raw data (the conventional method) and purified data (corrected for the effects of sleep and activity). Analysis of raw data gives misleading information about the phase and amplitude of the rhythms due to the masking effects of the exogenous component. Use of purified data indicates that during the process of adjustment after an eastward shift (a) phase changes are more erratic than after a shift to the west; (b) no marked decrease in the amplitude of the rhythms is evident; and (c) no clear evidence exists that the circadian rhythm breaks up temporarily. The masking effect was less after the time zone transition if sleep maintenance was poor.     

The Effect of Temperature on Reproduction in FivePrimulaSpecies

Primula vulgarisHuds.,P. verisL.,P. frondosaJanka, and threepopulations ofP. farinosaL. were legitimately and illegitimatelypollinated, and the self-fertileP. scoticaselfed and cross-pollinatedand then subjected to uniform temperature conditions of 6, 15or 26 °C for 4 d before gynoecia were examined for pollengermination and pollen tube growth, or plants progressed toseed set at 15 °C, after which seeds were weighed, germinated,and seedlings grown on. The temperature responses of pollengermination and pollen tube growth were not always congruent,and varied between species, populations, and often between morphs(pin and thrum) in the distylous species. Nevertheless, optimaltemperature responses tended to be lower for vernal species(P. vulgarisandP. veris) and for subarcticP. scoticathan forlater flowering montane species. However, no relationship wasfound between pollen temperature response, and fertility. Thegreatest seed set occurred after legitimate pollination at 15°C in most cases; a flowering temperature of 26 °C tendedto impede seed set, except forP. scoticaand the low altitudepopulation ofP. farinosa. InP. veris, P. frondosaand the highaltitude population ofP. farinosa,some illegitimate pollen germinationand pollen tube growth occurred at 26 °C, but this did notlead to increased within-morph seed set in these self-incompatiblespecies at this relatively high temperature. Temperature atflowering frequently affected average seed weight, and inP.verisand two populations ofP. farinosathis attribute may havebeen influenced by seed number, the average seed weight of few-seededcapsules tending to be greater than for many-seeded capsules.A high seed weight might mitigate the disadvantageous effectsof low fecundity resulting from interactions with floweringtemperature. However, inP. vulgarisandP. scoticainteractionsbetween flowering temperature and seed weight may have other,undetermined, causes. The seed of four species germinated leastwell in standard conditions when set following a flowering temperatureof 6 °C, which tends to support the hypothesis that temperatureat flowering can affect seed physiology; in contrast the seedof the two upland populations ofP. farinosagerminated leastwell after flowering at 26 °C. We conclude that much morework is needed on interactions between temperature and reproductiveefficiency, but that preliminary indications suggest that aglobal increase in temperature at flowering might adverselyaffect the quantity and quality of seed set in some species.Copyright1998 Annals of Botany Company Distyly, pollen tube,Primula farinosa, Primula frondosa, Primula scotica, Primula veris, Primula vulgaris,reproduction, seed set, temperature.     

Effect of Rhizosphere Enzymes on Phytoremediation in PAH-Contaminated Soil Using Five Plant Species

A pot experiment was performed to study the effectiveness of remediation using different plant species and the enzyme response involved in remediating PAH-contaminated soil. The study indicated that species Echinacea purpurea, Festuca arundinacea Schred, Fire Phoenix (a combined F. arundinacea), and Medicago sativa L. possess the potential for remediation in PAH-contaminated soils. The study also determined that enzymatic reactions of polyphenol oxidase (except Fire Phoenix), dehydrogenase (except Fire Phoenix), and urease (except Medicago sativa L.) were more prominent over cultivation periods of 60d and 120d than 150d. Urease activity of the tested species exhibited prominently linear negative correlations with alkali-hydrolyzable nitrogen content after the tested plants were cultivated for 150d (R² = 0.9592). The experiment also indicated that alkaline phosphatase activity in four of the five tested species (Echinacea purpurea, Callistephus chinensis, Festuca arundinacea Schred and Fire Phoenix) was inhibited during the cultivation process (at 60d and 120d). At the same time, the study determined that the linear relationship between alkaline phosphatase activity and effective phosphorus content in plant rhizosphere soil exhibited a negative correlation after a growing period of 120d (R² = 0.665). Phytoremediation of organic contaminants in the soil was closely related to specific characteristics of particular plant species, and the catalyzed reactions were the result of the action of multiple enzymes in the plant rhizosphere soil.