Ecophysiology of avian migration in the face of current global hazards

Long-distance migratory birds are often considered extreme athletes, possessing a range of traits that approach the physiological limits of vertebrate design. In addition, their movements must be carefully timed to ensure that they obtain resources of sufficient quantity and quality to satisfy their high-energy needs. Migratory birds may therefore be particularly vulnerable to global change processes that are projected to alter the quality and quantity of resource availability. Because long-distance flight requires high and sustained aerobic capacity, even minor decreases in vitality can have large negative consequences for migrants. In the light of this, we assess how current global change processes may affect the ability of birds to meet the physiological demands of migration, and suggest areas where avian physiologists may help to identify potential hazards. Predicting the consequences of global change scenarios on migrant species requires (i) reconciliation of empirical and theoretical studies of avian flight physiology; (ii) an understanding of the effects of food quality, toxicants and disease on migrant performance; and (iii) mechanistic models that integrate abiotic and biotic factors to predict migratory behaviour. Critically, a multi-dimensional concept of vitality would greatly facilitate evaluation of the impact of various global change processes on the population dynamics of migratory birds.     

Birds are tracking climate warming, but not fast enough

Range shifts of many species are now documented as a response to global warming. But whether these observed changes are occurring fast enough remains uncertain and hardly quantifiable. Here, we developed a simple framework to measure change in community composition in response to climate warming. This framework is based on a community temperature index (CTI) that directly reflects, for a given species assemblage, the balance between low- and high-temperature dwelling species. Using data from the French breeding bird survey, we first found a strong increase in CTI over the last two decades revealing that birds are rapidly tracking climate warming. This increase corresponds to a 91 km northward shift in bird community composition, which is much higher than previous estimates based on changes in species range edges. During the same period, temperature increase corresponds to a 273 km northward shift in temperature. Change in community composition was thus insufficient to keep up with temperature increase: birds are lagging approximately 182 km behind climate warming. Our method is applicable to any taxa with large-scale survey data, using either abundance or occurrence data. This approach can be further used to test whether different delays are found across groups or in different land-use contexts.     

Fruit-eating in brids and its nutritional consequences

Fruits comprise a large protion of the diet in many bird species. Several species switch diet composition seasonally, from a diet consisting almost entirely of invertebrates to one that comprises even exclusively fruits, and vice versa. The adaptive significance of these dietary shifts has rarely been investigated. The present article reviews some recent data revealing much evidence that seasonal frugivory is highly adaptive, and that fruits may be an adequate food to satisfy the birds' daily nutritional demands. There is further evidence that fruits may provide particular nutritional qualities to meet particular demands. Secondary plant metabolites considered to act as feeding deterrents seem to be less detrimental to avian frugivores than observed in many herbivores. The birds appear to be able to counteract the detrimental effects of secondary compounds taken with their fruit diets. In addition, there is evidence that secondary plant compounds may even stimulate food intake and metabolism in avian frugivores, although the mechanisms of counteradaptation need to be clarified.     

Environmental variables associated with population patterns of the Kagu Rhynochetos jubatus of New Caledonia

The first comprehensive survey of the threatened Kagu Rhynochetos jubatus of New Caledonia based on 177 different listening areas outside the Rivière Bleue Park was carried out between June 1991 and January 1992. A total of 491 adult Kagus, including 208 pairs, were recorded in 84 of the areas, mostly in the Southern Province (403 birds, 177 pairs). Low Kagu numbers (one to four birds) were recorded in 56% (n = 47) of the areas. More than nine Kagus were recorded in each of 19 areas, which accounted for 57% (n = 282) of all birds. In these 19 areas, virtually all birds sang from intact forest. Kagu distribution was fragmented over a large area of the island, but birds occurred mostly in inland mountainous regions. Generalized linear modelling was used to investigate associations between Kagu numbers and eight environmental variables measured at each area. A minimal adequate model without interactions indicated that larger numbers of Kagus were in remoter habitat and on volcanic rock types. These results supported the qualitative analyses in previous surveys. A minimal adequate model with interactions suggested that greater numbers of Kagus were likely to be present with increasing remoteness from human settlements. The Kagu population is now fragmented amongst remote patches of habitat, and the results suggest this is most likely because of human-associated factors. Additional managed reserves to protect significant numbers of Kagus are urgently needed to ensure birds remain throughout the island and in a variety of biotypes.     

How many SNPs are enough?

Since the days of allozyme analysis, we have been enamored with the idea that if we just had enough polymorphic mendelian loci, we could gauge the inbreeding level of individuals by measuring heterozygosity and simultaneously measure the degree of genetic relatedness between pairs of individuals. Given Mendel’s Laws, we have always known that we would need numerous independently segregating loci to achieve any reasonable degree of accuracy. Santure et al. (2010, this issue) use a 771 marker SNP panel to assess heterozygosity levels and to assess pairwise relatedness, and compare both with theoretical expectations obtained from a carefully recorded pedigree of a zebra finch breeding colony, as a function of increasing numbers of SNP markers. They also compare the SNP results with those from a 20‐locus microsatellite panel, showing that adding SNPs to a fairly large microsatellite panel improves accuracy, but given an existing panel of 125 SNPs, little is to be gained by adding microsatellites. They show that the accuracy available for estimating individual levels of inbreeding is somewhat limited. They also show that the average pairwise relatedness measures bracket pedigree relationship very nicely, but the variances for individual pairs remain substantial, even with a very large panel.     

Recovery of bird communities after selective logging and clear-cutting in Kibale National Park,Uganda

In the face of the continuing destruction of tropical rainforests, a major challenge is to understand the consequences of these habitat changes for biodiversity and the time scale at which biodiversity can recover after such disturbances. In this study, we assessed the patterns in communities of birds among forests of varying age consisting of clear-cuts of former coniferous plantations, selectively logged compartments and primary forests in Kibale National Park, Uganda. Birds were surveyed by 10-minute point counts at 174 randomly located points in nine forest areas during September–October 2011. A total of 2 688 birds representing 115 species were recorded. The species density, diversity and dominance of all birds, and dominance of forest specialists showed no differences between forest areas, whereas the species density and diversity of forest specialists differed significantly between forest areas. The composition of communities of all birds and of forest specialists varied significantly among the forest areas. Our results show that even after 19 and 43 years, respectively, communities of birds in clear-cuts of former coniferous plantations and selectively logged forests have not fully recovered from the disturbances of logging, highlighting the need to preserve primary forests for conservation of birds.     

Evaluation of potential indicators of viral contamination in shellfish and their applicability to diverse geographical areas

The distribution of the concentration of potential indicators of fecal viral pollution in shellfish was analyzed under diverse conditions over 18 months in diverse geographical areas. These microorganisms have been evaluated in relation to contamination by human viral pathogens detected in parallel in the analyzed shellfish samples. Thus, significant shellfish-growing areas from diverse countries in the north and south of Europe (Greece, Spain, Sweden, and the United Kingdom) were defined and studied by analyzing different physicochemical parameters in the water and the levels of Escherichia coli, F-specific RNA bacteriophages, and phages infecting Bacteroides fragilis strain RYC2056 in the shellfish produced, before and after depuration treatments. A total of 475 shellfish samples were studied, and the results were statistically analyzed. According to statistical analysis, the presence of human viruses seems to be related to the presence of all potential indicators in the heavily contaminated areas, where E. coli would probably be suitable as a fecal indicator. The F-RNA phages, which are present in higher numbers in Northern Europe, seem to be significantly related to the presence of viral contamination in shellfish, with a very weak predictive value for hepatitis A virus, human adenovirus, and enterovirus and a stronger one for Norwalk-like virus. However, it is important to note that shellfish produced in A or clean B areas can sporadically contain human viruses even in the absence of E. coli or F-RNA phages. The data presented here will be useful in defining microbiological parameters for improving the sanitary control of shellfish consumed raw or barely cooked.     

Levels of male-specific RNA bacteriophage and Escherichia coli in molluscan bivalve shellfish from commercial harvesting areas

AIMS: Current measures for controlling the public health risks associated with bivalve molluscan shellfish consumption rely on the use of Escherichia coli to indicate the sanitary quality of shellfish harvesting areas. However, it has been demonstrated that E. coli is an inadequate indicator of the viral risk associated with shellfish. An alternative indicator organism, male-specific RNA (FRNA) bacteriophage has been proposed for this role. This study compared the distribution of E. coli and FRNA bacteriophage in shellfish harvesting areas. METHODS AND RESULTS: A total of 608 shellfish samples from 49 shellfish harvesting areas were analysed for E. coli and FRNA bacteriophage using standard published methods. The geometric mean concentration of FRNA bacteriophage in all samples was over three times greater than that of E. coli (1800 and 538 counts/100 g for FRNA bacteriophage and E. coli, respectively). In contrast to E. coli, FRNA bacteriophage concentrations were strongly influenced by season with a geometric mean count of 4503 PFU/100 g in the winter (October-March) compared with 910 PFU/100 g in the summer (April-September). CONCLUSIONS: FRNA bacteriophage were present in shellfish at higher concentrations than E. coli. Elevated levels of FRNA bacteriophage observed in the winter concur with the known increased viral risk associated with shellfish harvested at that time of year in the UK. Levels of FRNA bacteriophage found in many shellfish from category B harvesting areas would not be eliminated by conventional treatment processes. SIGNIFICANCE AND IMPACT OF THE STUDY: Data from this study will inform future proposals to introduce FRNA bacteriophage as an indicator of the viral risk associated with shellfish.     

Translocation of the Eastern Bristlebird 1: radio‐tracking of post‐release movements

Summary Translocating birds to a new area of habitat to restore or supplement depleted populations may pose a significant threat to the translocated individuals. While for many species, translocated individuals appear to move larger distances than resident animals, species with poor dispersal capacity may be restricted in movements and translocation methods may need to accommodate differences in movements to ensure success. In this study, designed to provide insights to inform our broader programme of translocations in New South Wales, Australia, we investigated post‐release movements in the endangered, semi‐flightless Eastern Bristlebird (Dasyornis brachypterus). We predicted that movements would be minimal, with few differences between males and females, similar to published information for a resident un‐manipulated population. Following the release of 45 birds at a host location at Jervis Bay, NSW, over a 3‐year programme, we followed individuals for up to 2 weeks using radio‐tracking. The translocated birds had larger maximum movements and moved through much larger home ranges than non‐translocated individuals from the resident population. Translocated birds moved 300 m further after release when conspecifics were present. Males moved further than females and tended to have larger home ranges, although average daily displacement did not differ. We concluded that the semi‐flightlessness of the species does not result in minimal movements. Release at a small number of locations in the new habitat was considered appropriate for the species, as animals seem to move enough to find new unoccupied areas in a relatively short period. This work provided us with increasing confidence to continue with further translocations.     

Flapping before Flight: High Resolution,Three-Dimensional Skeletal Kinematics of Wings and Legs during Avian Development

Some of the greatest transformations in vertebrate history involve developmental and evolutionary origins of avian flight. Flight is the most power-demanding mode of locomotion, and volant adult birds have many anatomical features that presumably help meet these demands. However, juvenile birds, like the first winged dinosaurs, lack many hallmarks of advanced flight capacity. Instead of large wings they have small “protowings”, and instead of robust, interlocking forelimb skeletons their limbs are more gracile and their joints less constrained. Such traits are often thought to preclude extinct theropods from powered flight, yet young birds with similarly rudimentary anatomies flap-run up slopes and even briefly fly, thereby challenging longstanding ideas on skeletal and feather function in the theropod-avian lineage. Though skeletons and feathers are the common link between extinct and extant theropods and figure prominently in discussions on flight performance (extant birds) and flight origins (extinct theropods), skeletal inter-workings are hidden from view and their functional relationship with aerodynamically active wings is not known. For the first time, we use X-ray Reconstruction of Moving Morphology to visualize skeletal movement in developing birds, and explore how development of the avian flight apparatus corresponds with ontogenetic trajectories in skeletal kinematics, aerodynamic performance, and the locomotor transition from pre-flight flapping behaviors to full flight capacity. Our findings reveal that developing chukars (Alectoris chukar) with rudimentary flight apparatuses acquire an “avian” flight stroke early in ontogeny, initially by using their wings and legs cooperatively and, as they acquire flight capacity, counteracting ontogenetic increases in aerodynamic output with greater skeletal channelization. In conjunction with previous work, juvenile birds thereby demonstrate that the initial function of developing wings is to enhance leg performance, and that aerodynamically active, flapping wings might better be viewed as adaptations or exaptations for enhancing leg performance.     

Evaluation of Potential Indicators of Viral Contamination in Shellfish and Their Applicability to Diverse Geographical Areas

The distribution of the concentration of potential indicators of fecal viral pollution in shellfish was analyzed under diverse conditions over 18 months in diverse geographical areas. These microorganisms have been evaluated in relation to contamination by human viral pathogens detected in parallel in the analyzed shellfish samples. Thus, significant shellfish-growing areas from diverse countries in the north and south of Europe (Greece, Spain, Sweden, and the United Kingdom) were defined and studied by analyzing different physicochemical parameters in the water and the levels of Escherichia coli, F-specific RNA bacteriophages, and phages infecting Bacteroides fragilis strain RYC2056 in the shellfish produced, before and after depuration treatments. A total of 475 shellfish samples were studied, and the results were statistically analyzed. According to statistical analysis, the presence of human viruses seems to be related to the presence of all potential indicators in the heavily contaminated areas, where E. coli would probably be suitable as a fecal indicator. The F-RNA phages, which are present in higher numbers in Northern Europe, seem to be significantly related to the presence of viral contamination in shellfish, with a very weak predictive value for hepatitis A virus, human adenovirus, and enterovirus and a stronger one for Norwalk-like virus. However, it is important to note that shellfish produced in A or clean B areas can sporadically contain human viruses even in the absence of E. coli or F-RNA phages. The data presented here will be useful in defining microbiological parameters for improving the sanitary control of shellfish consumed raw or barely cooked.     

A preliminary study on the effects of oyster culturing structures on birds in a sheltered Irish estuary

This study investigated the species composition, numbers and behaviour of birds in an intertidal oyster culture area in Cork Harbour . These data were compared to a nearby area free of aquaculture within the same estuary in March 1999. Species which occurred in the aquaculture free area were also observed in the trestle-area. The most abundant species were oystercatcher Haematopus ostralegus, redshank Tringa totanus, dunlin Calidris alpina, curlew Numenius arquata, black-headed gull Larus ridibundus and common gull Larus canus. Oystercatcher, curlew, black-headed gull and common gull occurred in significantly lower numbers in the trestle area, while for redshank and dunlin the differences were not significant. The percentage of birds feeding did not differ between the two areas. Oystercatcher, redshank, dunlin and curlew mostly fed in both areas. In contrast, black-headed gull and common gull generally did not feed, but surveyed the area. Whether the trestles were covered by oyster bags or not did not have any effect on the number of birds except for the dunlin. Dunlin were significantly more frequent beneath the trestles with bags compared with those without bags. In general, the percentage of birds feeding did not differ between areas. Interspecies differences occurred with regard to the position occupied by birds at the trestles. Oystercatcher, redshank and curlew spent more time underneath the trestles. Dunlin, black-headed gulls and common gulls did not differ in numbers underneath or on top of the trestles. These preliminary observations at a single time period give some insight as to the potential interactions between shellfish aquaculture and intertidal birds.     

Behavioural adaptations of birds to environments where evaporation is high and water is in short supply

1. Behaviour that reduces the heat load or evaporation experienced by birds living in arid areas is reviewed. Many species have evolved hunting behaviour that enables them to remain inactive during the hottest parts of the day and thus greatly reduce the amount of metabolic heat that they need to dissipate. Flights to water are made at low ambient temperatures, either early in the morning or late in the evening. Fighting is rare in many species of desert birds, avoiding the excess generation of heat by this activity. Many arid zone birds maintain long-lasting pair bonds, avoiding the necessity for active, elaborate display before breeding and again reducing activity. 2. The observations on nomadism are discussed. No unifying principles that might control the behaviour of birds seeking widely separated areas of abundance of food have yet emerged. 3. Some species have evolved mechanisms, embodied in behavioural characteristics, that ensure that the eggs and chicks are sheltered from high temperatures and are provided with adequate moisture. 4. Birds have evolved many different kinds of behavioural adaptation to arid zones and representatives from many avian families live there, apparently successfully.     

Threshold Responses of Forest Birds to Landscape Changes around Exurban Development

Low-density residential development (i.e., exurban development) is often embedded within a matrix of protected areas and natural amenities, raising concern about its ecological consequences. Forest-dependent species are particularly susceptible to human settlement even at low housing densities typical of exurban areas. However, few studies have examined the response of forest birds to this increasingly common form of land conversion. The aim of this study was to assess whether, how, and at what scale forest birds respond to changes in habitat due to exurban growth. We evaluated changes in habitat composition (amount) and configuration (arrangement) for forest and forest-edge species around North America Breeding Bird Survey (BBS) stops between 1986 and 2009. We used Threshold Indicator Taxa Analysis to detect change points in species occurrence at two spatial extents (400-m and 1-km radius buffer). Our results show that exurban development reduced forest cover and increased habitat fragmentation around BBS stops. Forest birds responded nonlinearly to most measures of habitat loss and fragmentation at both the local and landscape extents. However, the strength and even direction of the response changed with the extent for several of the metrics. The majority of forest birds’ responses could be predicted by their habitat preferences indicating that management practices in exurban areas might target the maintenance of forested habitats, for example through easements or more focused management for birds within existing or new protected areas.     

Conquering the night: understanding nocturnal migration in birds

Abstract

Migration is a biologically distinct and unique phenomenon that enables the birds to migrate twice-a-year between the breeding and wintering grounds. These movements are known as spring and autumn migration, respectively. Depending on their inherent programming, the migratory birds may fly during day or night or both. Different environmental factors such as, temperature, food, predator pressure and physiological demands of energy storage and expenditure, contribute to the pattern of migrations, day or nighttime. Since, most of them are nighttime migrants they have to make dramatic changes in their physiology and behavior to transform them from being diurnal to predominantly nocturnal. These changes result in different life history stages (LHSs) such as migration, reproduction and molt, in their annual cycle, which are regulated by endogenous circadian and circannual clocks. As a result, the birds start preparing well in advance for the approaching LHS. The present review focuses on behavioral strategies of a nocturnal migrant and understanding of the possible physiological responses to ensure successful migration.     

Agriculture: the real nexus for enhancing bioavailable micronutrients in food crops

Human existence requires that agriculture provide at least 50 nutrients (e.g., vitamins, minerals, trace elements, amino acids, essential fatty acids) in amounts needed to meet metabolic demands during all seasons. If national food systems do not meet these demands, mortality and morbidity rates increase, worker productivity declines, livelihoods are diminished and societies suffer. Today, many food systems within the developing world cannot meet the nutritional needs of the societies they support mostly due to farming systems that cannot produce enough micronutrients to meet human needs throughout the year. Nutrition transitions are also occurring in many rapidly developing countries that are causing chronic disease (e.g., cancer, heart disease, stroke, diabetes, and osteoporosis) rates to increase substantially. These global developments point to the need to explicitly link agricultural technologies to human health. This paper reviews some ways in which agriculture can contribute significantly to reducing micronutrient malnutrition globally. It concludes that it is imperative that close linkages be forged between the agriculture, nutrition and health arenas in order to find sustainable solutions to micronutrient malnutrition with agriculture becoming the primary intervention tool to use in this fight.     

Birds at a Southern California beach: seasonality, habitat use and disturbance by human activity

Use of a Santa Barbara beach by people and birds varied in both time and space. There were 100 birds, 18 people and 2 dogs per kilometer. Bird density varied primarily with the season and tide while human activity varied most between weekend and weekday. Bird distributions along the beach were determined mainly by habitat type (particularly a lagoon and exposed rocky intertidal areas) For crows and western gulls, there was some evidence that access to urban refuse increased abundance. Interactions between birds and people often caused birds to move or fly away, particularly when people were within 20 m. During a short observation period, 10% of humans and 39% of dogs disturbed birds. More than 70% of birds flew when disturbed. Bird species varied in the frequency that they were disturbed, partially because a few bird species foraged on the upper beach where contact with people was less frequent. Most disturbances occurred low on the beach. Although disturbances caused birds to move away from humans, most displacement was short enough that variation in human activity did not alter large-scale patterns of beach use by the birds. Birds were less reactive to humans (but not dogs) when beach activity was low.     

Ringing or colour-banding does not increase predation mortality in redshanksTringa totanus

The use of metal and colour‐rings or bands as a means of measuring survival, movements and behaviour in birds is universal and fundamental to testing ecological and evolutionary theories. The practice rests on the largely untested assumption that the rings do not affect survival. However this assumption may not hold for several reasons, for example because the ‘oddity effect’ predicts predators select prey that appear different to their neighbours in order to avoid the ‘confusion effect’. We compared the foraging behaviour and the death rates of redshanks Tringa totanus conspicuously marked with six colour rings and one metal ring each to unmarked birds in a study system, where routinely up to 50% of the total population are killed by avian predators during a winter. If avian predators selectively target and/or have a higher capture success of ringed birds then we would predict the proportion of colour‐ringed birds in the population to decline through a winter. The proportion of colour‐ringed birds in the population did not change over the course of three separate winters, and in one winter the ratio of marked:unmarked birds found killed by sparrowhawks Accipiter nisus was the same as the ratio of marked birds alive in the population. In the year with largest sample size, power was sufficient to detect a greater than 2.2% difference in predation rate between ringed and unringed groups. The average kill rate difference between ringed and unringed birds across the three winters was less than 1% (0.73±2.2%) suggesting that even if there were differences in predation rate that were not detected because of low statistical power they were extremely small. There were no differences in any foraging measures comparing ringed and unringed birds, suggesting that the rings did not affect the ability of birds to meet their daily energy budgets. The results showed that colour‐ringed birds were not preferentially targeted or killed by avian predators, and suggest that the presence of a metal and even several large colour‐rings is unlikely to affect behaviour and predation mortality even under extreme selection.     

An Assessment of the Annual Mortality Rate and Population Demographics Status in Birds Based on Ring-Recovery Data

A new method for assessing the annual mortality rate in bird populations is described. Ring recoveries from birds that died from various causes serve as the basis for such an assessment. The commonly accepted technique for such an assessment performed with the help of MARK software is laborious, yet fails to ensure a highly precise assessment. To calculate the mortality rate, we propose an exponential demographic model that is based on the geometric progression of a decrease in the annual numbers in some arbitrarily selected set of birds in a population. The equation of the model allows calculating the annual mortality rate of a bird population or even a species in a simple way, if the ringing data covers a vast area, for example, the territory of Russia. In addition, the proposed equation permits producing “a mortality pattern,” namely, to present a chart of interrelations between the theoretical and real rates of the decrease in numbers in a given cohort of birds. The interrelations between the theoretical and real annual mortality rates allow understanding the status of a bird population each year during a period of ringing and recovery collecting: this makes it possible to reveal the population trend about whether the population is stable or decreasing or increasing in numbers.     

Toxigenic saprophytic fungi in marine shellfish farming areas

Toxigenic saprophytic fungi were isolated from samples of shellfish, sediment and seawater obtained from marine shellfish farming areas. The 456 strains identified included 12 different genera, with a clear predominance (68%) of Penicillium, Aspergillus, Trichoderma and Cladosporium. To assess the risk of poisoning due to the presence of these fungi in shellfish farming areas, the strains were cultured in liquid medium, filtered, and tested on larvae of Artemia salina, a small crustacean highly sensitive to mycotoxins. Thirty-five point five percent of the strains proved active with this test. This study confirms the existence of fungi in shellfish farming areas, as suggested by our earlier work showing that filter-feeding shellfish accumulate toxic metabolites of fungal origin. The presence of fungi in the marine environment represents a real risk of poisoning through the consumption of contaminated shellfish.This revised version was published online in October 2005 with corrections to the Cover Date.