Preparation and characterization of α-L-glutamic acid oligomers

The preparation and characterization of α-L -glutamic acid oligomers with degree of polymerization (DP) up to 12 are described. The preparation of polymers with low DP corresponding to various A/I ratios (where A and I are monomer and initiator concentrations, respectively) with end groups blocked is given. The conditions of the fractionation, which separates the different oligomers by ion-exchange chromatography, are discussed. Finally, the isolation from salt solutions of the pure acidic form is given. Each polymer obtained for a given A/I is characterized at the end of the polymerization by its molecular-weight distribution. The average DP values calculated are compared to the A/I values; agreement is very good. Potentiometric behaviour during neutralization is obtained as a function of the degree of polymerization and the elaboration of the polyelectrolytic phenomenon is discussed.     

Molecular configuration of amylose and its complexes in aqueous solutions. Part III. Investigation of the DP distribution of helical segments in amylose–iodine complexes

The equilibrium normality [I_f] of free iodine in amylose-iodine complex formation is a function of the length of the polyiodine chains. This length depends on the DP of helical segments of amylose (sDP _n). Values of [I_f] and of the concentration of the bound iodine [I_b] were determined by the continuous photometric titration with automatic recording. Plots of [I_b] versus [I_f] give an integral distribution curve. Since the relation between [I_f] and sDP _n is known, the graphic differentiation of the [I_b] versus [l_f] curve furnishes the differential distribution curve, representing the mass distribution of the helical segments according to their DP . The peak of this curve is characteristic of the percentage and DP of those helical segments, which occur in the largest amount. On the basis of the differential distribution curve the polymolecularity of the investigated sample may be judged. The titration of amylose samples degraded by various methods gives different distribution curves. Titrating mixtures of samples with widely differing average DP values results in differential curves having more than one maximum.     

Molecular configuration of amylose and its complexes in aqueous solutions. Part II. Relation between the DP of helical segments of the amylose–iodine complex and the equilibrium concentration of free iodine

The iodine which is added to an aqueous amylose solution is bound only partly by the amylose while forming the blue complex and partly remains free. The equilibrium normality of the free and the bound iodine at half-saturation of amylose by iodine is designated as [I_f]_v and [I_b]_w, respectively. The stability of the poly iodine chain formed within the axis of amylose helices depends on its length, i.e., indirectly on the DP of the amylose helices: the greater this stability, the lower the [I_f]_v value. The amylose molecule consists of helical segments. Such a molecule may behave as a random coil. The average length of the helical segments in freshly prepared amylose-iodine complexes depends on temperature, pH, iodide concentration, the presence of other complex-forming agents, and the DP of the amylose. This latter factor is investigated in the present paper. By the aid of an automatically recording photometrictitrating device the coherent values of [I_b] and [I_f] were determined. Plotting these values against DP _n for mechanochemically degraded as well as for periodateo-xidized amyloses resulted in curves consisting of two linear sections. The break of the curves occurred between DP _n 110 and 130. It was concluded that below DP _n = 100 the DP of helical segments (= sDP _n) is identical to the DP _n of the total molecule, i.e., the molecule consists of only a single, relatively stiff helix. Above this limit the molecule contains several helical segments. The DP of these helical segments can be calculated as follows: sDP _n = 141.1 ? 10.2 × 10⁵[I_f]_v. This equation is considered to be valid for 0.5–0.6 mg. amylose in 100 ml. 0.1N HCl at 20°C., λ = 650 mμ, euuvet diameter 3.4 cm., the feed rate of the iodate-iodide titrating solution (in acid medium resulting in a 5 × 10^?3N I₂ solution with a molar iodide to iodine ratio of 1.5) is 0.4ml./min. Amylose molecules of, e.g., DP ⁿ = 1380 consist of an average of 11.4 segments having a DP of about 120 and consisting of an average of 15–18 helical turns.     

Molecular configuration of amylose and its complexes in aqueous solutions. Part IV. Determination of DP of amylose by measuring the concentration of free iodine in solution of amylose–iodine complex

In aqueous solutions of the amylase–iodine complex the concentration of free iodine [I_f]_v after reaching equilibrium (or closely approximating it) is determined by the following factors: temperature, pH, concentration of iodide ions and amylose, and DP of amylose. In the present paper the role of temperature, amylose concentration, and DP has been investigated. At half-saturation of amylose by iodine, the reciprocal value of free iodine defines the equilibrium constant: 1/[I_f]_v = K. The relation between [I_f]_v, in normality and temperature is the following: 5 + log [I_f]_v = ?(2.132/T) + 8.52, for DP _n = 1290, 0.4 mg. amylose in 100 ml. 0.1N HCl. The value of the energy of activation E_a between 2 and 52°C. is 9.72 kcal./mole. The influence of amylose concentration [Am] on photometrically determined [I_f]_v, at 20°C, in the range of 0.1–1.2 mg./100 ml. 0.1 N HCl for DP _n = 1290 is: 5 + log [I_f]_v = 0.209 ? 0.047 log [Am]. At [Am] = 0.6 mg. amylose/ 100 ml. 0.1 N HCl and 20°C, the value of [I_f]_v depends on DP _n as follows: 5 + log [I_f]_v = 0.085 = + 0.222 log (10⁴/DP _n). These above equations are summarized by the relation: [I_f]_v = exp {16.865 ? (E_a/RT)}[Am]^0.047(10⁴/DP _n)^0.222 ×10^?5 Considering that the determination of [I_f]_v by automatic photometric titration can be performed quickly and with appropriate reproducibility, this method is convenient for a rapid empirical and approximate determination of DP of amylose on a microscale. The iodine-binding capacity [IBC] as well as the value of λ_max, have been also investigated as functions of DP _n, by photometric and by amperometric titration.     

Heterogeneity of Cortical and Hippocampal 5-HT1A Receptors: A Reappraisal of Homogenate Binding with 8-[3H]Hydroxydipropylaminotetralin

Abstract: The selective serotonin (5-HT) agonist 8-hydroxydipropylaminotetralin (8-OH-DPAT) has been extensively used to characterize the physiological, biochemical, and behavioral features of the 5-HT_1A receptor. A further characterization of this receptor subtype was conducted with membrane preparations from rat cerebral cortex and hippocampus. The saturation binding isotherms of [³H]8- OH-DPAT (free ligand from 200 pM to 160 nM) revealed high-affinity 5-HT_1A receptors (K_H= 0.7–0.8 nM) and lowaffinity (K_L= 22–36 nM) binding sites. The kinetics of [³H]8-OH-DPAT binding were examined at two ligand concentrations, i.e., 1 and 10 nM, and in each case revealed two dissociation rate constants supporting the existence of high- and low-affinity binding sites. When the high-affinity sites were labeled with a 1 nM concentration of [³H]8- OH-DPAT, the competition curves of agonist and antagonist drugs were best fit to a two-site model, indicating the presence of two different 5-HT_1A binding sites or, alternatively, two affinity states, tentatively designated as 5-HT_1AHIGH and 5-HT_1A^LOW. However, the low correlation between the affinities of various drugs for these sites indicates the existence of different and independent binding sites. To determine whether 5-HT_1A sites are modulated by 5′-guanylylimidodiphosphate, inhibition experiments with 5-HT were performed in the presence or in the absence of 100 μM 5′-guanylylimidodiphosphate. The binding of 1 nM [³H]8-OH-DPAT to the 5-HT_1A^HIGH site was dramatically (80%) reduced by 5′-guanylylimidodiphosphate; in contrast, the low-affinity site, or 5-HT_1A^LOW, was seemingly insensitive to the guanine nucleotide. The findings suggest that the high-affinity 5-HT_1A^HIGH site corresponds to the classic 5-HT_1A receptor, whereas the novel 5-HT_1A^LOW binding site, labeled by 1 nM [³H]8-OH-DPAT and having a micromolar affinity for 5-HT, may not belong to the G protein family of receptors. To further investigate the relationship of 5-HT_1A sites and the 5-HT innervation, rats were treated with p-chlorophenylalanine or with the neurotoxin p-chloroamphetamine. The inhibition of 5-HT synthesis by p-chlorophenylalanine did not alter either of the two 5-HT_1A sites, but deafferentation by p-chloroamphetamine caused a loss of the low-affinity [³H]8-OH- DPAT binding sites, indicating-that these novel binding sites may be located presynaptically on 5-HT fibers and/or nerve terminals.     

Kinetics of protein aggregation. Quantitative estimation of the chaperone-like activity in test-systems based on suppression of protein aggregation

The experimental data on the kinetics of irreversible aggregation of proteins caused by exposure to elevated temperatures or the action of denaturing agents (guanidine hydrochloride, urea) have been analyzed. It was shown that the terminal phase of aggregation followed, as a rule, first order kinetics. For the kinetic curves registered by an increase in the apparent absorbance (A) in time (t) the methods of estimation of the corresponding kinetic parameters A _lim and k _I (A _lim is the limiting value of A at t and k _I is the rate constant of the first order) have been proposed. Cases are revealed when the reaction rate constant k _I calculated from the kinetic curve of aggregation of the enzymes coincides with the rate constant for enzyme inactivation. Such a situation is interpreted as a case when the rate of aggregation is limited by the stage of denaturation of the enzyme. A conclusion has been made that, in order to establish the mechanism of protein aggregation, the kinetic investigations of aggregation should be carried out over a wide range of protein concentrations. The refolding experiments after denaturation of proteins by guanidine hydrochloride or urea have been also analyzed. It was shown that aggregation accompanying refolding follows first order kinetics at the final phase of the process. The model of protein refolding explaining such a kinetic regularity has been proposed. When aggregation of protein substrate follows first order kinetics, parameters A _lim and k _I may be used for the quantitative characterization of the chaperone-like activity in the test-systems based on suppression of protein aggregation.     

The interaction of carboxymethylamylose and diethylaminoethylamylose with iodine

Spectrophotometric titrations of slightly substituted carboxymethylamylose (CM-Amy) and diethylaminoethylamylose (DEAE-Amy) with iodine in the presence of iodide (I₂/I^?) were carried out as a function of iodide concentration, temperature, and polymeric charge. Binding isotherms for the polymer-I₂/I^? complex are reported in terms of an apparent binding constant (K_a) plotted versus degree of saturation of the complex (θ). The dependence of K_a upon polymeric charge is interpreted as evidence for the negatively charged character of the bound species. The cooperative nature of the binding process is evident in the positive slope of K_a vs (θ). Whereas the apparent binding constants and binding cooperativities for the derivatives are smaller than for the amylose-I₂/I^? complex, the binding enthalpies deduced from the temperature dependence of K_a at θ = 0.5 appear to be the same for amylose and CM-Amy. A viscometric titration of fully charged CM-Amy with I₂/I^?, conducted at dialysis equilibrium between the CM-Amy-I₂/I^? solution and the polymer-free solvent phase, disclosed a maximum in the plot of intrinsic viscosity ([η]) vs θ. The increase in [η] at small θ was interpreted as a reflection of polyelectrolyte expansion provoked by absorption of the negatively charged bound species; the subsequent decline in [η] is attributed to stabilization by I₂/I^? of compact helical sequences or to the formation at higher θ of intermolecular aggregates.     

Interconvertible Kinetic States of t-Butylbicycloorthobenzoate Binding Sites of the γ-Aminobutyric AcidA Ionophores

The kinetics of t-[³H]butylbicycloorthobenzoate (TBOB) binding to the convulsant sites of the γ-aminobutyric acid_A (GABA_A) receptor-ionophore complex were examined in synaptosomal membrane preparations of rat brain. On and off rates of TBOB binding were accelerated by 1 μM GABA and decelerated by 1 μM bicuculline methochloride, a GABA_A antagonist. The presence of GABA and bicuculline methochloride created rapid and slow phases of dissociation, respectively. The three groups of rate constants distinguished for the dissociation of 4 nM and 30 nM [³H]TBOB represent multiaffinity states of the convulsant sites depending on the presence of GABA or bicuculline methochloride. Apparent association rate constants do not obey the equation k_app=k_off±k_on [TBOB] without assuming interconvertibility of the kinetic states during binding. Avermectin B_1a (AVM B_1a), a chloride channel opening agent, accelerated the association and dissociation of TBOB and resulted in a biphasic effect on TBOB binding, i.e., enhancement at low concentrations (EC₅₀, 7.8 nM) followed by displacement at high concentrations (IC₅₀ 6.3 μM) of AVM B_1a. AVM B_1a resulted in similar biphasic effects on t- [³⁵S]butylbicyclophosphorothionate binding. DIDS, an isothiocyanatostilbene derivative with irreversible anion channel blocking effect, selectively inhibited basal [³H]TBOB binding (IC₅₀ 125 μM DIDS) leaving the enhancement by AVM B_1a unaffected.     

Biodegradation of phenol by arthrobacter and modelling of the kinetics

The toxic effects of phenol, a common constituent of many industrial effluents, necessitates treatment of the polluted streams. Biodegradation is a popular technique and enjoys many advantages. The degradation of phenol with Arthrobacter species is studied in batch cultures and it is observed that the substrate is inhibiting. The fit of various models, including the model proposed earlier by us [17], to the experimental data is studied. The model is used to fit available data in literature, which unfortunately is very sparse. In all the cases the present model fits the data best.List of Symbols S mg/l substrate concentration - S ₀ mg/l threshold substrate concentration - K _I mg/l inhibition constant - K _m , K _s mg/l half saturation constant of growth kinetics - m, n constants - 1/h specific growth rate - _m 1/h maximal specific growth rate - X mg/l biomass concentration at time t - X ₀ mg/l initial biomass concentration Abbreviations MTCC Microbial Type Culture Collection - IMTECH Institute of Microbial Technology The cooperation of the staff of the Biosciences and Biotechnology Center, I.I.T. Madras is greatly appreciated.     

Feed-forward activation in a theoretical first-order biochemical pathway which contains an anticipatory model

This paper explores the consequences of the theoretical forward activation enzymatic pathway A ₀ A ₁ A ₂ A ₃ where E ₁ convents A ₀ to A ₁, E ₂ converts A ₁ to A ₂ and E ₃ converts A ₂ to A ₃. A ₀, which is environmentally determined, also serves to activate (or modulate) the activity of E ₃ in such a way as to keep the concentration of A ₂ ([A ₂]) constant at a particular set-point value. For mathematical simplicity, first order rate kinetics are used where k ₁, k ₂ and k ₃ are the rate constants for E ₁, E ₂, and E ₃ respectively. It is shown that if k ₃ is modulated appropriately so as keep [A ₂] at the setpoint value with a changing upstream [A ₀], then the modulation of k ₃ must be anticipatory of the dynamics of the biochemical pathway. In other words, the rate of change of k ₃, will be a function of [A ₀], k ₁, k ₂, k ₃, and the set-point value of [A ₂]. If the modulation of k ₃ does not perfectly model (anticipate) the reaction pathway of which it is a part, then the actual [A ₂] will deviate from the set-point value. This type of anticipatory feed-forward activation may represent an important aspect of biological organization.     

Some effects of short-chain phospholipids and n-alkanes on a transient potassium current (I A ) in identified Helix neurons

Many effects of short-chain phospholipids and n-alkanes on the squid axon sodium current (I _Na) are consistent with mechanisms involving changes in membrane thickness. Here, we suggest that the actions of short-chain phospholipids on an A-type potassium current (I _A ) in two-microelectrode voltage clamped Helix D1 and F77 neurons are incompatible with such simple mechanisms. Diheptanoyl phosphatidylcholine (diC₇PC, 0.2 and 0.3 mm) caused substantial (58 and 79%), and in some cases partially reversible, increases in I _A amplitude. These were correlated with hyperpolarizing shifts of up to –7 mV in the voltage dependence of current activation. The voltage dependence of steady-state inactivation was also moved in the hyperpolarizing direction. These effects are the opposite of those described for squid I _Na. 0.5 Saturated n-pentane and saturated n-hexane caused significant (–3 and –6 mV) hyperpolarizing shifts in the voltage dependence of I _A inactivation, qualitatively consistent with their effects on squid I _Na, while the voltage dependence of activation was moved slightly to the left or unchanged. Hydrocarbons had variable effects on peak current amplitude, although saturated n-pentane produced a clear suppression. DiC₇PC caused a 25% increase in the time constant of macroscopic I _A inactivation ( _b ) but 0.5 saturated n-pentane and saturated n-hexane reduced _b by 40%. The effects of these agents on current-clamped cells were broadly consistent with their opposing actions on _b —phospholipids tended to reduce excitability and n-alkanes tended to increase it. Possible mechanisms of I _A perturbation are discussed.We gratefully acknowledge financial support from the Science and Engineering Research Council and the Wellcome Trust. We would also like to thank Prof. H. Meves, Dr. N. Franks and Dr. W. Lieb for helpful discussions.     

Absence of adrenergic red cell pH and oxygen content regulation in American eel (Anguilla rostrata) during hypercapnic acidosis in vivo and in vitro

Summary American eels (Anguilla rostrata) were exposed to acute (30 min) external hypercapnia (1% CO₂ or 5% CO₂ in air) in order to assess the involvement of circulating catecholamines in regulating red blood cell (RBC) pH and oxygen content during whole blood acidosis. Plasma adrenaline levels increased approximately 5-fold during severe hypercapnia yet absolute levels remained below 1.0 nM; plasma noradrenaline levels were unchanged. Both RBC pH and oxygen bound to haemoglobin ([O₂]/[Hb]) conformed to in vitro relationships with whole blood pH (pHe) indicating absence of regulation during hypercapnia in vivo. Pre-treatment of eels with - or -adrenoceptor antagonists, phentolamine or propranolol was without effect on RBC pH or [O₂]/[Hb] during hypercapnia. Further, intra-arterial injection of adrenaline (final plasma concentration=134 nM) or noradrenaline (final plasma concentration = 34 nM) into hypercapnic eels 5 min prior to blood sampling did not modify any measured blood variable RBC nucleoside triphosphate (NTP) levels, RBC pH and [O₂]/[Hb]. In vitro, the application of adrenaline or noradrenaline to eel RBC's during graded normoxic hypercapnia or hypoxic hypercapnia (noradrenaline only) did not affect RBC pH significantly. RBC NTP levels were depressed by noradrenaline in vitro but only during hypoxic hypercapnia.The results demonstrate adrenergic insensitivity of eel RBC's in vivo even under conditions (acidosis, hypoxemia) known to enhance catecholamine-mediated RBC responses in other species. We conclude that the American eel has no capacity to regulate RBC pH during hypercapnia and consequently [O₂]/[Hb] is reduced in accordance with the in vitro Root effect.     

Prediction and Dissection of Widely-Varying Association Rate Constants of Actin-Binding Proteins

Actin is an abundant protein that constitutes a main component of the eukaryotic cytoskeleton. Its polymerization and depolymerization are regulated by a variety of actin-binding proteins. Their functions range from nucleation of actin polymerization to sequestering G-actin in 1∶1 complexes. The kinetics of forming these complexes, with rate constants varying at least three orders of magnitude, is critical to the distinct regulatory functions. Previously we have developed a transient-complex theory for computing protein association mechanisms and association rate constants. The transient complex refers to an intermediate in which the two associating proteins have near-native separation and relative orientation but have yet to form short-range specific interactions of the native complex. The association rate constant is predicted as k _a = k _a0 , where k _a0 is the basal rate constant for reaching the transient complex by free diffusion, and the Boltzmann factor captures the bias of long-range electrostatic interactions. Here we applied the transient-complex theory to study the association kinetics of seven actin-binding proteins with G-actin. These proteins exhibit three classes of association mechanisms, due to their different molecular shapes and flexibility. The 1000-fold k _a variations among them can mostly be attributed to disparate electrostatic contributions. The basal rate constants also showed variations, resulting from the different shapes and sizes of the interfaces formed by the seven actin-binding proteins with G-actin. This study demonstrates the various ways that actin-binding proteins use physical properties to tune their association mechanisms and rate constants to suit distinct regulatory functions.     

Folding and Unfolding Pathways of the Human Telomeric G-Quadruplex

Sequence analogs of human telomeric DNA such as d[AGGG(TTAGGG)₃] (Tel22) fold into monomeric quadruplex structures in the presence of a suitable cation. To investigate the pathway for unimolecular quadruplex formation, we monitored the kinetics of K⁺-induced folding of Tel22 by circular dichroism (CD), intrinsic 2-aminopurine fluorescence, and fluorescence resonance energy transfer (FRET). The results are consistent with a four-step pathway U ↔ I₁ ↔ I₂ ↔ I₃ ↔ F where U and F represent unfolded and folded conformational ensembles and I₁, I₂, and I₃ are intermediates. Previous kinetic studies have shown that I₁ is formed in a rapid pre-equilibrium and may consist of an ensemble of “prefolded” hairpin structures brought about by cation-induced electrostatic collapse of the DNA. The current study shows that I₁ converts to I₂ with a relaxation time τ₁ = 0.1 s at 25 °C in 25 mM KCl. The CD spectrum of I₂ is characteristic of an antiparallel quadruplex that could form as a result of intramolecular fold-over of the I₁ hairpins. I₃ is relatively slowly formed (τ₂ ≈ 3700 s) and has CD and FRET properties consistent with those expected of a triplex structure as previously observed in equilibrium melting studies. I₃ converts to F with τ₃ ≈ 750 s. Identical pathways with different kinetic constants involving a rapidly formed antiparallel intermediate were observed with oligonucleotides forming mixed parallel/antiparallel hybrid-1 and hybrid-2 topologies {e.g. d[TTGGG(TTAGGG)₃A] and d[TAGGG(TTAGGG)₃TT]}. Aspects of the kinetics of unfolding were also monitored by the spectroscopic methods listed above and by time-resolved fluorescence lifetime measurements using a complementary strand trap assay. These experiments reveal a slow, rate-limiting step along the unfolding pathway.     

Change in kinetic regime of protein aggregation with temperature increase. Thermal aggregation of rabbit muscle creatine kinase

Creatine kinase thermal aggregation kinetics has been studied in 30 mM Hepes-NaOH buffer, pH 8.0, at two temperatures: 50.6 and 60°C. Aggregation kinetics was analyzed by measuring the growth of apparent absorption (A) at 400 nm. It was found that the limiting value of apparent absorption (A _lim) is proportional to protein concentration at both temperatures. The first order rate constant (k _I) does not depend on protein concentration in the range 0.05–0.2 mg/ml at temperature 50.6°C, but at temperature 60°C it increases with the growth of protein concentration in the range 0.1–0.4 mg/ml. Kinetic curves, shown in coordinates {A/A _lim; t}, in experiments at 50.6°C fuse to a common curve, which coincides with the theoretical curve of creatine kinase denaturation calculated using the denaturation rate constant determined from differential scanning calorimetry. At temperature 60°C, half-transformation time t _1/2 = ln2/k _I decreases when protein concentration grows. We conclude that when temperature increased from 50.6 to 60°C, change in the kinetic regime of thermal creatine kinase aggregation took place: at 50.6°C aggregation rate is limited by the stage of protein molecule denaturation, but at 60°C it is limited by the stage of protein aggregate growth, which proceeds as a reaction of pseudo-first order. Small heat shock protein Hsp 16.3 Mycobacterium tuberculosis suppresses the creatine kinase aggregation. Published in Russian in Biokhimiya, 2006, Vol. 71, No. 3, pp. 408–416.     

Cytology of a pentaploid hybrid and genome analysis in Solanum nigrum L.

Cytology of a pentaploid hybrid (2n=60) produced by crossing an autotetraploid (2n=48) of a diploid race of Solanum nigrum L. as seed parent with the naturally occurring hexaploid S. nigrum (2n=72) was studied which showed approximately 24_II+12_I. Chromosome pairing in the gametic complement of the hexaploid was deduced to be 12_II+12_I and on this basis it is concluded that the natural hexaploid is an autoallohexaploid, which has three sets (genomes) of 12 chromosomes each, two of which are to a large extent homologous to each other. Theoretically the genomic formula can be tentatively written as AAAABB. Since the natural hexaploid does not show any quadrivalents between the four homologous A genomes, chromosome pairing appears to be restricted to bivalent formation by a special genetic mechanism. The probability that S. nigrum could be an autohexaploid, parallelling Pheleum pratense, has been discussed.     

Kinetics of biopolymerization on nucleic acid templates

The kinetics of biopolymerization on nucleic acid templates is discussed. The model introduced allows for the simultaneous synthesis of several chains, of a given type, on a common template, e.g., the polyribosome situation. Each growth center [growing chain end plus enzyme(s)] moves one template site at a time, but blocks L adjacent sites. Solutions are found for the probability n_j(t) that a template has a growing center that occupies the sites j — L + 1,…, j at time t. Two special sets of solutions are considered, the uniform-density solutions, for which n_j(t) = n, and the more general steady-state solutions, for which dn_j(t)/dt = 0. In the uniform-density case, there is an upper bound to the range of rates of polymerization that can occur. Corresponding to this maximum rate, there is one uniform solution. For a polymerization rate less than this maximum, there are two uniform solutions that give the same rate. In the steady-state case, only L = 1 is discussed. For a steady-state polymerization rate less than the maximum uniform-density rate, the steady-state solutions consist of either one or two regions of nearly uniform density, with the density value(s) assumed in the uniform region(s) being either or both of the uniform-density solutions corresponding to that polymerization rate. For a steady-state polymerization rate equal to or slightly larger than the maximum uniform-density rate, the steady-state solutions are nearly uniform to the single uniform-density solution for the maximum rate. The boundary conditions (rate of initiation and rate, of release of completed chains from the template) govern the choice among the possible solutions, i.e., determine the region(s) of uniformity and the value(s) assumed in the uniform region(s).     

Lanthanide ions induce hydrolysis of hemoglobin-bound 2,3-diphosphoglycerate (2,3-DPG), conformational changes of globin and bidirectional changes of 2,3-DPG-hemoglobin’s oxygen affinity

The changes in structure and function of 2,3-diphosphoglycerate-hemoglobin (2,3-DPG-Hb) induced by Ln³⁺ binding were studied by spectroscopic methods. The binding of lanthanide cations to 2,3-DPG is prior to that to Hb. Ln³⁺ binding causes the hydrolysis of either one from the two phosphomonoester bonds in 2,3-DPG non-specifically. The results using the ultrafiltration method indicate that Ln³⁺ binding sites for Hb can be classified into three categories: i.e. positive cooperative sites (N_I), non-cooperative strong sites (N_S) and non-cooperative weak sites (N_W) with binding constants in decreasing order: K_I>K_S>K_W. The total number of binding sites amounts to about 65 per Hb tetramer. Information on reaction kinetics was obtained from the change of intrinsic fluorescence in Hb monitored by stopped-flow fluorometry. Fluctuation of fluorescence dependent on Ln³⁺ concentration and temperature was observed and can be attributed to the successive conformational changes induced by Ln³⁺ binding. The results also reveal the bidirectional changes of the oxygen affinity of Hb in the dependence on Ln³⁺ concentration. At the range of [Ln³⁺]/[Hb]<2, the marked increase of oxygen affinity (P₅₀ decrease) with the Ln³⁺ concentration can be attributed to the hydrolysis of 2,3-DPG, while the slight rebound of oxygen affinity in higher Ln³⁺ concentration can be interpreted by the transition to the T-state of the Hb tetramer induced by Ln³⁺ binding. This was indicated by the changes in secondary structure characterized by the decrease of α-helix content.     

The Androctonus australis garzoni scorpion venom contains toxins that selectively affect voltage-dependent K+-channels in cerebellum granular cells

A purified peptide from Androctonus australis Garzoni venom (AaG) affects selectively a K⁺-current recorded from cerebellum granular cells. This current is characterized by fast activating and inactivating kinetics similar to an I_A-type current. Addition of 2 μm peptide Aa1 (from Androctonus australis, toxin 1) to the external side of the channel suppressed completely and in a selective manner the I_A-type current, with an IC50 value of 130 nm, whereas in the same conditions, the other potassium current, identified as delayed rectifier (I_d), was not affected. Additionally, we show that another partially purified peptide (III-12) from the same venom was able to block reversibly both K⁺-currents. Received: 10 February 1997 / Accepted: 7 August 1997     

Intra- and intermolecular charge-transfer interactions between terminal electron donor and acceptor attached to poly(γ-benzyl-L-glutamate) in solution

Poly(γ-benzyl-L -glutamate) having a terminal dimethylaminoanilide group as an electron donor (D) and a terminal 3,5-dinitrobenzoyl group as an electron acceptor (A) (A-[Glu(OBzl)]_n-D) was synthesized by the N-carboxyanhydride method. Polymer samples were fractionated by gel chromatography and their number-average degrees of polymerization n were determined by the absorbances of the terminal chromophores. These polymers in chloroform and dimethylformamide solutions showed a charge-transfer (CT) absorption band around 455 nm, and the fraction of the polymer forming the CT complex was evaluated as a function of the chain length. CT absorption for short chains (n = 5 ～ 20) was attributed to intramolecular CT complex in which the A-[Glu(OBzl)]_n-D chain takes cyclic conformations. An optimum chain length for the intramolecular CT was found to be n ? 10, where the [Glu(OBzl)]_n chain may most easily bend back to form cyclic conformations. Stronger CT absorption observed for longer chains than n = 20 was shown to be intermolecular, and an intermolecular head-to-tail aggregation was found to be a cause of the strong CT interaction. All helical A-[Glu(OBzl)]_n-D chains were found to form the head-to-tail dimers in chloroform solution.