Molecular interactions of hormonal steroids: the participation of the 17 side chain of corticosteroids in the formation of complexes with Co (II.). II

The c₂₀-c₂₁ α-ketol system of the 176 side chain of deoxycorti-costerone is in equilibrium with its c₂₀-c₂₁ enediol. The apparent dissociation constant of this enol was determined by a photometric method using crystal violet indicator; p K_a¹ = 10.65 ± 044. Formation constants of the (1:1) deoxycorticosterone-cobalt (II) complex were determined by solvent extraction and in mixed solvent systems. The complex formation constant K_f in an aqueous medium was found by graphical extrapolation to be 2.5–3.0 × 10⁻¹ 1. mole⁻¹     

A straightforward chemical synthesis of 17-ketosteroids by cleavage of the C-17-dihydroxy acetone side chain in corticosteroids

A facile and convenient approach to 17-ketosteroids is described. Treatment of steroids containing the C-17-dihydroxy acetone side chain with an excess of sodium methoxide in dry 1,4-dioxane under reflux, affords high yields of the corresponding 17-ketosteroids that are recovered as pure products, without the need of further purification.     

Co(II) complexes with tripodal N-donor ligands: Thermodynamics of formation in anaerobic conditions and oxygen binding

The complex formation of Co(II) with N-donor ligands in dimethylsulfoxide (DMSO) is investigated by means of calorimetric and spectroscopic methods. The ligands considered in this work are tripodal polyamines and polypyridines: 2,2′,2′′-triaminotriethylamine (TREN), tris(2-(methylamino)ethyl)amine (Me₃TREN), tris(2-(dimethylamino)ethyl)amine (Me₆TREN), tris[(2-pyridyl)methyl]amine (TPA) and 6,6′-bis-[bis-(2-pyridylmethyl)aminomethyl]-2,2′-bipyridine (BTPA).These ligands are characterized by a systematic modification of the donor groups in order to study how their structure is related to the stability of the complexes formed and to their ability to bind oxygen. A comparison with thermodynamic data for similar Cd(II) systems as well as with data referred to linear tetra-amines in DMSO is also made. The solvent effect on the nature and stability of the species formed is discussed. DFT calculations are carried out to explain the trend in thermodynamic parameters for Me₆TREN. Only Co(TREN)²⁺ is able to bind oxygen and two successive species (μ-superoxo and μ-peroxo) are formed. The kinetics of oxygen uptake by Co(TREN)²⁺ is found to be less solvent-dependent than other Co(II)-polyamine complexes when the formation of the mononuclear μ-superoxo complex is considered.     

Interactions of bismuth complexes with metallothionein(II).

Bismuth complexes are widely used as anti-ulcer drugs and can significantly reduce the side effects of platinum anti-cancer drugs. Bismuth is known to induce the synthesis of metallothionein (MT) in the kidney, but there are few chemical studies on the interactions of bismuth complexes with metallothionein. Here we show that Bi(3+) binds strongly to metallothionein with a stoichiometry bismuth:MT = 7:1 (Bi(7)MT) and can readily displace Zn(2+) and Cd(2+). Bismuth is still bound to the protein even in strongly acidic solutions (pH 1). Reactions of bismuth citrate with MT are faster than those of [Bi(EDTA)](-), and both exhibit biphasic kinetics. (1)H NMR data show that Zn(2+) is displaced faster than Cd(2+), and that both Zn(2+) and Cd(2+) in the beta-domain (three metal cluster) of MT are displaced by Bi(3+) much faster than from the alpha-domain (four metal cluster). The extended x-ray absorption fine structure spectrum of Bi(7)MT is very similar to that for the glutathione and N-acetyl-L-cysteine complexes [Bi(GS)(3)] and [Bi(NAC)(3)] with an inner coordination sphere of three sulfur atoms and average Bi-S distances of 2.55 A. Some sites appear to contain additional short Bi-O bonds of 2.2 A and longer Bi-S bonds of 3.1 A. The Bi(3+) sites in Bi(7)MT are therefore highly distorted in comparison with those of Zn(2+) and Cd(2+).     

Thioether side chain cyclization for helical peptide formation: inhibitors of estrogen receptor-coactivator interactions.

Cystine, lanthionine, and cystathionine containing cyclic peptides incorporating the signature nuclear receptor (NR) box (LXXLL) motif have been synthesized and the abilities of these peptides to inhibit estrogen receptor (ER)-coactivator interactions have been determined. We found that helicity of these peptides directly correlated with their bioactivity. Cystathionine proved to be a redox-stable, isosteric replacement for the cystine disulfide. Cystathionine containing peptide 3 showed higher helical character and a lower inhibition constant (Ki, 7 nm) when compared with its cystine counterpart.     

Differential effects of serine side chain interactions in amyloid formation by islet amyloid polypeptide

Islet amyloid polypeptide (IAPP), a 37 residue polypeptide, is the main protein component of islet amyloid deposits produced in the pancreas in Type 2 diabetes. Human IAPP contains five serine residues at positions 19, 20, 28, 29, and 34. Models of the IAPP amyloid fibril indicate a structure composed of two closely aligned columns of IAPP monomers with each monomer contributing to two intermolecular β‐strands. Ser 19 and Ser 20 are in the partially ordered β‐turn region, which links the two strands, whereas Ser 28, Ser 29, and Ser 34 are in the core region of the amyloid fibril. Ser 29 is involved in contacts between the two columns of monomers and is the part of the steric zipper interface. We undertook a study of individual serine substitutions with the hydrophobic isostere 2‐aminobutyric acid (2‐Abu) to examine the site‐specific role of serine side chains in IAPP amyloid formation. All five variants formed amyloid. The Ser 19 to 2‐Abu mutant accelerates amyloid formation by a factor of 3 to 4, while the Ser 29 to 2‐Abu mutation modestly slows the rate of amyloid formation. 2‐Abu replacements at the other sites had even smaller effects. The data demonstrate that the cross‐column interactions made by residue 29 are not essential for amyloid formation and also show that cross‐strand networks of hydrogen‐bonded Ser side chains, so called Ser‐ladders, are not required for IAPP amyloid formation. The effect of the Ser 19 to 2‐Abu mutant suggests that residues in this region are important for amyloid formation by IAPP.     

Molecular docking: The role of noncovalent interactions in the formation of protein-nucleotide and protein-peptide complexes

Knowledge of the spatial structure of complexes formed by cellular proteins and membrane receptors with their respective ligands is an important step towards understanding the mechanisms of their functioning. Rational drug design and the search for new therapeutically active compounds also require structural information on the interaction of prototypic drugs with the target protein. The present review briefly describes the main computational methods of molecular docking that are used to predict the conformation of a ligand bound to the active center of a protein. Approaches enabling an increase of the precision and efficiency of the currently used docking algorithms are exemplified by the recent projects of the Laboratory of Biomolecular Modeling of IBCh RAS. Special attention is paid to hydrophilic and hydrophobic interactions, as well as to the stacking phenomena that account for the molecular recognition of specific ligand fragments. These types of contacts are often inadequately described by the algorithms of the estimation of the intermolecular interaction energy of the existing docking programs (scoring functions), this ultimately leading to erroneous predictions of the three-dimensional structure of complexes. Therefore, a thorough consideration of these interactions is one of the most important tasks of molecular modeling.     

Backbone side chain interactions in peptides. I. Crystal structures of model dipeptides with the Pro-Ser sequence

The preferential occurrence of amino-acid residues having short polar side-chain within beta-folded regions of crystallized proteins suggests the existence of some stabilizing interaction involving the side polar function. Three model dipeptides tBuCO-L-Pro-L-Ser-NHMe 1, tBuCO-L-Pro-D-Ser-NHMe 2 in the pure enantiomeric a and racemic b forms, and iPrCO-L-Pro-D-Ser-OMe 3 have been investigated in the solid state by X-ray crystallography. Homo and heterochiral sequences 1 and 2 are folded in the beta I and beta II types, respectively, whereas 3 obviously accommodates an open conformation. Besides the i + 3 leads to i hydrogen bond typical of beta-bends in 1, 2a, and 2b, the Ser NH group in all four crystal structures is a proton donor to the lone orbitals of the Ser O gamma oxygen atom. The result is that the disposition of the Ser C alpha--C beta bond corresponds to the rotamer III (chi 1 congruent to 60 degrees). As shown by the crystal structure of 3, the intra-Ser NH. . .O gamma hydrogen bonding is not restricted to beta-folded Pro-Ser sequences. Therefore, this interaction is not only a stabilizing factor for beta-turns but it is also probably responsible for the already mentioned stability of rotamer III for the Ser C alpha--C beta bond in peptides and protein.     

CIDNP study of the aromatic side chain interactions in myotoxina

CIDNP and COSY measurements were applied to study aromatic side chain interactions and conformations in myotoxina, aCrotalus venom toxin which acts as blocker of the Ca²⁺ influx in the sarcoplasmic reticulum calcium pump. New evidence for the existence of a hydrophobic aromatic cluster at the amino terminus was obtained. This cluster consists of Tyr₁, His₅, His₁₀, and (possibly) F₁₂. The CIDNP data clearly establish that the usual order of the tyrosine 2, 6 and 3, 5 proton signals of Tyr, is inverted, because of the large diamagnetic shielding effects of one ring on the other. The lines of the 2, 6 ring protons of Tyr₁, and proton 4 in each of His₅ and His₁₀ are significantly broadened, an outcome of the side-chain hydrophobic interaction. The aromatic cluster could possibly present a hydrophobic sticky patch for binding of toxin by Ca²⁺ ATPase.     

Electronic structure of platinum(II) antitumor complexes and their interactions with nucleic acid bases. I

Using the semi-empirical all-valence method (GRINDOL) (recently modified and extended to transition series elements), electronic structure and intermolecular interactions of the model antitumor Pt(II) compounds with guanine and thioguanine have been calculated. Several possible models of antitumor action of platinum compounds are discussed. It is concluded that cis-Pt(II) complexes with guanine form stable intrastrand N7N7 cross-links (but chelation to the O6 atom is also possible). The trans-isomers of platinum(II) exclusively form interstrand cross-links, but the cis-Pt(II) complexes with thioguanine form almost entirely the N7S five-membered chelates.     

Fluorous interactions in complexes of lead(II) hexafluoroacetylacetonate

Structure determinations for 2,2′-bipyridine and 1,10-phenanthroline adducts of lead(II) hexafluoroacetylacetonate, [Pb(bipy)₂(hfacac)₂] (1), [Pb(bipy)(hfacac)₂] (2), and [Pb(phen)(hfacac)₂] (3), show that the balance of intermolecular forces within the lattices is seemingly sensitive to the adduct stoichiometry but not to the nature of the heteroaromatic base. In 3, a structure, in which there is an apparent preference for CF/aromatic interactions over separate CF/CF and aromatic/aromatic interactions, is essentially identical at both 120 and 293 K.     

Pseudohalide-bridged five-coordinate Ni(II) or Co(II) complexes with bulky bidentate ligands: Magneto-structural correlationship

Bidentate ligands 2,2′-biquinoline (biq) and 6,6′-dimethyl-2,2′-bipyridine (dmbpy) with steric hindrance substituents cis to the nitrogen atoms have been used in the synthesis of transition metal complexes. Six new doubly end-on azido-bridged binuclear complexes [M₂(biq)₂(μ_1,1-N₃)₂(N₃)₂] (M = Ni (1), M = Co (2)), [M₂(biq)₂(μ_1,1-N₃)₂Cl₂] (M = Ni (3), M = Co (4)), [M₂(dmbpy)₂(μ_1,1-N₃)₂(N₃)₂] (M = Ni (5), M = Co (6)) and one end-to-end thiocyanato-bridged polymeric [Ni(dmbpy)(μ_1,3-SCN)(NCS)]_n (7) have been synthesized and characterized by single crystal X-ray diffraction analysis and magnetic studies. Complexes 1-6 comprise five-coordinate M(II) ions bridged by two end-on azide ligands. The bridging M-N-M bond angles are in the small range 104.1-105.2°. Complex 7 consists of a singly thiocyanate-bridged Ni(II) chain in which Ni(II) ions are five-coordinate. This research suggests that the bulky ligands play a key role in the formation of five-coordinate coordination structure. All complexes display intramolecular intermetallic ferromagnetic coupling with J_NiNi and J_CoCo of ca. 23 or 13 cm⁻¹ based on the Hamiltonian (S₁ = S₂ = 1 for Ni₂, or 3/2 for Co₂). The singly SCN⁻-bridged chainlike complex 7 shows intrachain ferromagnetic interaction with J = 3.96(2) cm⁻¹ and D = −4.55(8) cm⁻¹ (. Magneto-structural correlationship has been investigated.     

Derivatives of ethynylestradiol with oxygenated 17 alpha-alkyl side chain: synthesis and biological activity

The coupling reaction of an acetylide ion with alkyl bromide or delta-valerolactone was used to synthesize twelve 17 alpha-derivatives of ethynylestradiol having various 17 alpha-side chain lengths and, except one, having mono- or di-oxygenated function on the side chain. All compounds had low (0.01-1.79%) relative binding affinity (RBA) for the rat uterine estrogen receptor. The highest RBA were obtained for compounds 26 (1.79%), 30 (1.55%) and 19 (0.42%). The length and polarity of the side chain decreases the affinity for the estrogen receptor. The in vivo estrogenic activity was measured on mouse uterine weight and was found to range from 0 to 35%, except for compound 30 (100%). The antiuterotrophic activity was measured by inhibition of estradiol-induced stimulation of uterine weight and was found to be 39% for compound 19, 25% for compound 26 and 0% for all other compounds. These two compounds (19 and 26) possess mixed agonist and antagonist activity.     

Steroids and steroidases XX (1). Aggregation in aqueous solution of steroids with stigmastane type C-17 side chains and its influence on their enzymic transformations

The possibility that aggregation of hydrophobic plant sterols such as β-sitosterol in aqueous solution might be one of the factors operating against facile microbial degradation of their C-17 side chains has been investigated using Δ⁵-3-ketostigmastane derivatives as model substrates. Analysis by an acid-catalyzed isomerization kinetic procedure has confirmed that they are severely aggregated even in dilute aqueous solution and that addition of large proportions of an organic solvent such as methanol is required to effect complete solvation of the steroids. However, oxygenation of the stigmastane side chain causes dramatic reductions in their aggregation tendencies. Using the Δ⁵→ Δ⁴-3-ketosteroid isomerase of $\text{P. testosteroni}$ as a representative enzyme of microbial steroid metabolism, it has been shown that although the degrees of solvation which can be achieved with unmodified stigmastane-type side chains are insufficient for enzymic isomerization to occur, the 22,23-epoxide or -diol derivatives do become good substrates when they are only marginally disaggregated. The overall results indicate that aggregation in aqueous solution of plant sterols is an important factor to be taken into account when microbiological degradation of the C-17 group is desired and that prior hydroxylation of the potential substrates should be beneficial.     

Molecular interactions of zinc(II) cyclams with polycarboxylato ligands

Four new zinc(II) cyclams of the composition {Zn(L)(tp²⁻) · H₂O}_n (1), {Zn(L)(H₂bta²⁻) · 2H₂O}_n (2), [Zn₂(L)₂(ox²⁻)] 2ClO₄ · 2DMF (3), and Zn(L)(H₂btc⁻)₂ · 2DMF (4), where L = cyclam, tp²⁻ = 1,4-benzenedicarboxylate ion, H₂bta²⁻ = 1,2,4,5-benzenetetracarboxylate ion, ox²⁻ = oxalate ion, DMF = N,N-dimethylformamide, and H₂btc⁻ = 1,3,5-benzenetricarboxylate ion, have been synthesized and structurally characterized by a combination of analytical, spectroscopic and crystallographic methods. The carboxylato ligands in the complexes 1-4 show strong coordination tendencies toward zinc(II) cyclams with hydrogen bonding interactions between the pre-organized N-H groups of the macrocycle and oxygen atoms of the carboxylato ligands. The macrocycles in 1, 2, and 4 adopt trans-III configurations with the appropriate R,R,S,S arrangement of the four chiral nitrogen centers, respectively. However, the complex 3 shows an unusual cis V conformation with the R,R,R,R nitrogen configuration. The finding of strong interactions between the carboxylato ligands and the zinc(II) ions may provide additional knowledge for the improved design of receptor-targeted zinc(II) cyclams in anti-HIV agents.