甜菜银叶病菌的PCR检测

本研究用16S23S rDNA间的ITS 序列通用引物L1（5′AGTCGTAACAAGGTAGCCGT3′）和L2 （5′ GTGCCAAGGCATCCACC3）扩增甜菜银叶病菌（Curtobacterium flaccumfaciens pv. betae,Cfb）和其它相近细菌的基因组DNA;并对其PCR产物进行回收、克隆和测序,将所获序列和其它已报道的细菌内源转录间隔区(Internally Transcribed Spacer,ITS)序列进行多重比较后设计出Cfb的特异性引物B1（5′GGCCTCGTGTTGTCCCTTATC3′）和B2 （5′GTCACCAATCAACAACCCGAG3′）。此引物可以从Cfb中扩增出387bp 的特异性片段,而其余参试的21个细菌PCR反应结果均为阴性。该方法可以应用于病害防治工作中的Cfb快速、可靠的检测。     

稻曲病菌的Nested PCR检测

为设计稻曲病菌(Ustilaginoidea virens)专化性PCR引物,测定了1991-2001年采集的多个水稻品种、不同水稻产区的菌株的ITS和5.8S rDNA区序列。U. virens的ITS1、ITS2和5.8S rDNA区域的长度为 624-625bp, 序列高度保守。在与麦角菌科其它种比较的基础上,设计了U. virens专化性嵌合引物。采用PCR方法可以灵敏地检测目标真菌,并且与传统的组织观察结果很好地吻合。这一结果为深入研究稻曲病的侵染规律和建立田间早期诊断技术提供了可能。     

应用PCR方法检测油菜菌核病菌对多菌灵的抗药性

通过保守的寡核苷酸引物B1/B3扩增出油菜菌核病菌MBC^HR和MBC^S菌株的部分β-微管蛋白基因,结果发现编码的198位氨基酸由Clu(GAG)突变为Ala(GCG),表现高水平抗药性。根据MBC^HR菌株的突变设计2个快速检测方法：第一种方法是根据MBC^HR菌株197和198位密码子（GACGAG→GACGCG）形成HhaI酶切点（3'CGCG 5'）,将B1/B3的扩增产物874bp片段酶切成193bp和681bp片段,而MBC^S菌株的PCR产物不被酶切;第二种方法用198位突变密码子作为3'末端碱基设计2个等位基因特异性寡核苷酸引物（ASO）用一地“nested”PCR或直接从基因组DNA扩增。通过PCR扩增和ThaI酶切能直接检测油菜菌核病菌的MBC^HR和MBC^S菌株,所得结果与传统菌落直径法相吻合。     

拮抗辣椒疫病菌的红树内生细菌

<正>随着绿色农业的兴起和可持续发展观念的提出,高效、无毒、无害的植物病虫害防治措施越来越受到人们的关注和重视。生物防治因对人畜安全无毒、无污染、无残留,具有不易使病原菌产生耐药性、生产工艺     

苹果黑星病菌SSR反应体系的优化

通过对苹果黑星病菌基因组DNA的SSR反应中一些重要参数进行优化,结果表明,最适反应体系为:2 5μL体系中,10×Buffer Mg Cl2 2 0 mm ol/ L 2 .5μL ,d NTP 10 0μmol·L- 1 、引物0 .5μmol·L- 1 、Taq DNA聚合酶1.5 U ,DNA模板2 m g·L- 1 ,dd H2 O 19.5μL .PCR扩增程序为93℃,2 min,5 7℃,30 s,1个循环;72℃,1m in,93℃,30 s,5 7℃,30 s,4 0个循环;72℃,10 min.     

新疆地区小麦白粉病菌寄主范围的研究

用小麦白粉病菌11个生理小种的混合菌种,对新疆地区的小麦近缘植物的7个属22个种的47份材料进行接种,除6份免疫外,其余均接种成功.用其中6个属19个种的29份小麦近缘植物产生的白粉病菌,对小麦回接,参试的29份材料全部回接成功.小麦白粉病菌对小麦近缘植物的寄生像在小麦上一样,有明显的寄生专化性.感病的小麦近缘植物的78.0%对小麦白粉病菌的感病性,随生育期增长而急剧下降.文中并对小麦白粉病中间寄主的作用进行了讨论.     

栗疫病菌的营养体亲和性基因和dsRNAs对病毒传播的影响

研究了栗疫病菌（Ｃｒｐｈｏｎｅｃｔｒｉａｐａｒａｓｉｔｉｃａ（Ｍｕｒｒ）．Ｂａｒｒ）营养体亲和性基因及ｄｓＲＮＡ病毒对菌株间病毒特征与传播影响,试验选用已知４个ＶＣ基因座位的１５个ＶＣ基因型菌株和３种ｄｓＲＮＡ病毒,通过含病毒菌株与野生型菌株的配对培养,将病毒逐个转入不同ＶＣ基因型菌株,将不同ＶＣ基因型的含病毒菌株与具特定ＶＣ基因差异的野生型菌株配对培养,根据培养两周后野生型菌株培养性状的改变与否     

大豆疫霉根腐病菌的rDNA ITS序列分析

采用真菌核糖体基因转录间隔区(ITS)通用引物,PCR扩增了大豆疫霉根腐病菌具有差异的17个菌株的ITSI与ITS2,经过与DL2000的标准分子量DNA进行比较,得到了大约800~1000bp左右的片段,并对PCR产物进行了序列测定。以USA为外类群利用最大简约法构建了大豆疫霉根腐病菌的系统发生树,并分析了菌株之间的遗传进化关系。结果表明:不同菌株ITS1和ITS2在碱基构成上有很大差异,17个菌株大致分为4个谱系中,且来自于同一地区的菌株大都分布在同一谱系中,显示出地理上的差异。     

香茅精油对番茄早疫病菌的抑菌作用及抑菌机制

为探明香茅精油的抑菌作用及其在植物病害生物防治中的应用价值,采用平板抑菌法和熏蒸法测定了香茅精油对番茄早疫病菌的抑菌活性,及其对菌丝体内电解质渗漏、可溶性蛋白质含量、丙二醛(MDA)含量、营养物质的吸收和超氧化物歧化酶(SOD)活性的影响.结果表明: 香茅精油对番茄早疫病菌有较强的抑菌作用,且该作用具有时间-剂量依赖性,但无杀菌作用.采用熏蒸法处理的抑制效果较平板抑菌法更好,处理48 h后,半抑制浓度(IC₅₀)分别为13.40 μL·L^-1和103.23 mg·L^-1;处理144 h后,IC₅₀分别为33.81 μL·L^-1和145.16 mg·L^-1.125 mg·L^-1香茅精油处理12 h后,菌丝体的电导率和MDA含量分别为对照的2.7和2.2倍,SOD活性和可溶性蛋白质含量分别提高88.5%和21.9%,还原糖的吸收减少11.3%.香茅精油可通过破坏病原菌细胞膜完整性和抑制菌体对营养物质的吸收来抑制病原菌菌丝的生长.香茅精油在植物病害生物防治中有一定的开发潜力.     

小麦根腐病菌索氏平脐蠕孢SYBR Green I实时荧光定量PCR检测技术研究

由索氏平脐蠕孢Bipolaris sorokiniana引起的小麦根腐病,常和其他土传真菌病害混合发生,传统的症状鉴别方法很难区分,导致病害防控难度增加。为建立病菌实时荧光定量检测体系,根据ITS序列设计引物,筛选出1对特异性引物BS‐F/R,扩增片段大小为280bp。以菌丝DNA为标准品构建实时荧光定量标准曲线,并对其灵敏度、特异性、可重复性进行评价。结果表明,建立的实时荧光定量PCR检测方法速度快,灵敏度高,特异性强,重复性好。构建的荧光定量PCR标准曲线循环阈值与模板浓度呈良好的线性关系,溶解曲线的吸收峰单一,扩增效率良好。利用该定量检测体系,可以检测出田间小麦样品中52.8fg/μL的病菌DNA。     

Biocontrol of Alternaria triticina by plant growth promoting rhizobacteria on wheat

Abstract

Eighteen isolates of fluorescent pseudomonads and Bacillus spp. were isolated from Alternaria triticina suppressive soils of wheat fields. These isolates were evaluated in the laboratory and greenhouse for the biocontrol of A. triticina. Six isolates were considered to have potential for the biocontrol of A. triticina on the basis of antibiotic sensitivity, fluorescence produced by Pseudomonas, inhibitory effect on A. triticina and root colonization of wheat roots by these isolates. These six isolates (Pa22, Pf27, Pa28, B25, B28, and B30) were further tested for their biocontrol potential against A. triticina on wheat in a pot test. Out of six isolates, isolate B28 was best in improving wheat growth of A. triticina inoculated plants. Isolate B28 also caused higher reduction in percentage infected leaf area caused by A. triticina while isolate Pa22 was found best in improving growth of plants without A. triticina.     

Identification of purple blotch pathogen of shallot by PCR using specific primer for Alternaria genus

Purple blotch (Alternaria porri), having symptom similar to stemphylium blight (Stemphylium vesicarium), is one of the important diseases that significantly lowered shallot yield in Indonesia. However, stemphylium blight has never been reported. Purple blotch pathogens from farmers’ crops in Bantul and experimental crop in Centre of Innovative Agricultural Technology Universitas Gadjah Mada (CIAT-UGM) Sleman Regencies were identified to observe whether Stemphylium sp. was found with A. porri. Thirteen isolates obtained showed variability in colony texture, colour and pigmentation. DNA fingerprinting through Polymerase Chain Reaction of BOX and Enterobacterial Repetitive Intergenic Consensus region dispersed those isolates into two main groups. Identification using Alternaria-specific primers, Dir1ITSAlt/Inv1ITSAlt revealed that 10 isolates were Stemphylium sp. and 3 isolates were Alternaria sp. A. porri was only identified from CIAT-UGM. This finding emphasise that the Alternaria-specific primer was able to amplify Stemphylium sp. Besides, stemphylium blight disease may have been occurred in farmers’ crops in Bantul.     

Detection of Stachybotrys chartarum using rRNA, tri5, and β-tubulin primers and determining their relative copy number by real-time PCR

Highly conserved regions are attractive targets for detection and quantitation by PCR, but designing species-specific primer sets can be difficult. Ultimately, almost all primer sets are designed based upon literature searches in public domain databases, such as the National Center for Biotechnology Information (NCBI). Prudence suggests that the researcher needs to evaluate as many sequences as available for designing species-specific PCR primers. In this report, we aligned 11, 9, and 16 DNA sequences entered for Stachybotrys spp. rRNA, tri5, and β-tubulin regions, respectively. Although we were able to align and determine consensus primer sets for the 9 tri5 and the 16 β-tubulin sequences, there was no consensus sequence that could be derived from alignment of the 11 rRNA sequences. However, by judicious clustering of the sequences that aligned well, we were able to design three sets of primers for the rRNA region of S. chartarum. The two primer sets for tri5 and β-tubulin produced satisfactory PCR results for all four strains of S. chartarum used in this study whereas only one rRNA primer set of three produced similar satisfactory results. Ultimately, we were able to show that rRNA copy number is approximately 2-log greater than for tri5 and β-tubulin in the four strains of S. chartarum tested.     

Detection and Identification of Yersinia pestis by Polymerase Chain Reaction (PCR) Using Multiplex Primers

A PCR method for detection of Yersinia pestis-virulence determinants by the use of multiplex primers was developed. Four pairs of oligonucleotide primers were designed from each gene of three kinds of virulent plasmids and a chromosomal DNA; 60-Md plasmid-located gene (caf1) encoding Y. pestis-specific capsular antigen fraction 1, a Y. pestis-specific region of a yopM gene encoded on 42-Md virulent plasmid, a plasminogen activator gene (pla) encoded on Y. pestis-specific 7-Md plasmid and an invasin protein gene (inv) encoded on chromosomal DNA. This multiplex-primer system was specific for the detection of Y. pestis among pathogenic Yersinia species and other enterobacteriaceae having antigens common to Y. pestis. Since this method is simple and safe, it will be useful to identify and confirm Y. pestis in cases of emergency and for the surveillance of epidemics.     

PCR enrichment techniques to identify the diet of predators

The increasing sensitivity of PCR has meant that in the last two decades PCR has emerged as a major tool in diet studies, enabling us to refine our understanding of trophic links and to elucidate the diets of predators whose prey is as yet uncharacterized. The achievements and methods of PCR-based diet studies have been reviewed several times, but here we review an important development in the field: the use of PCR enrichment techniques to promote the amplification of prey DNA over that of the predator. We first discuss the success of using group-specific primers either in parallel single reactions or in multiplex reactions. We then concentrate on the more recent use of PCR enrichment techniques such as restriction enzyme digests, peptide nucleic acid clamping, DNA blocking and laser capture microdissection. We also survey the vast literature on enrichment techniques in clinical biology, to ascertain the pitfalls of enrichment techniques and what refinements have yielded some highly sensitive methods. We find that while there are several new approaches to enrichment, peptide nucleic acid clamping and DNA blocking are generally sufficient techniques for the characterization of diets of predators and highlight the most important considerations of the approach.     

Genotyping of archival Atlantic salmon scales from northern Quebec and West Greenland using novel PCR primers for degraded mtDNA

PCR primers were successfully designed to amplify small ND1 gene fragments for RFLP genotyping of degraded Atlantic salmon Salmo salar mtDNA. Analysis of archival scales with these primers, when existing primer sets failed, show Atlantic salmon from the George River, Quebec, to include European haplotypes and those from the Kapisidlit River, West Greenland, to be fixed for a European haplotype characteristic of Baltic populations.     

Isolation and characterization of polymorphic microsatellite markers for Alternaria alternata

Alternaria alternata is of major significance as a food and feed contaminant and is able to produce a range of mycotoxins that may elicit adverse effects in both animals and humans. We describe the isolation and characterization of five microsatellite markers for studying A. alternata. Marker polymorphism was screened in 64 isolates of A. alternata. The number of alleles per locus ranged from eight to 24, and allelic diversity ranged from 0.425 to 0.882. These markers will be useful in the study of relationships and population genetics amongst isolates of A. alternata.     

应用特异PCR快速鉴定微生物肥料中4种乳酸菌

【目的】植物乳杆菌(Lactobacillus plantarum)、鼠李糖乳杆菌(L.rhamnosus)、嗜酸乳杆菌(L.acidophilus)和德氏乳杆菌(L.delbrueckii)是微生物肥料生产中常用的乳酸菌,它们表型特征相似,若采用传统方法鉴定则费时费力,为准确、快速地鉴定这些种,建立种特异PCR方法。【方法】利用NCBI中Primer-BLAST(引物设计和特异性检验工具),以GenBank数据库中上述菌种的recA和gyrB为靶基因,设计和筛选种特异性引物从而建立相应特异PCR鉴定方法。【结果】经过乳杆菌属(Lactobacillus)、乳球菌属(Lactococcus)、片球菌属(Pediococcus)、芽孢杆菌属(Bacillus)、类芽孢杆菌属(Paenibacillus)、短芽孢杆菌属(Brevibacillus)和假单胞菌属(Pseudomonas)7个属24个种共40株标准菌株的实验验证,4个目标种分别扩增出唯一的目的产物,而其他种均无目的扩增产物。采用建立的4种特异PCR方法对产品中分离的16株乳杆菌进行鉴定,结果与16S rDNA序列分析、Biolog鉴定结果一致。【结论】建立的特异PCR鉴定方法均具有较高的种内通用性和种间特异性,可快速、准确的用于微生物制剂中植物乳杆菌、德氏乳杆菌、鼠李糖乳杆菌、嗜酸乳杆菌的检测和鉴定,具有较好的应用前景。