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1.
Genetic structure of an insect-pollinated and bird-dispersed tropical tree in vegetation fragments and corridors: implications for conservation 总被引:2,自引:0,他引:2
In the vegetation corridors that connect small remnants of undisturbed primary forest in the Lavras landscape (Brazil), Protium spruceanum is a representative of a mass-flowering insect-pollinated and bird-dispersed tree. Allozyme variation was quantified from
five forest remnants (N = 150) from secondary vegetation corridors linking them (N = 80) to generate information for genetic conservation. The species adhered to H-W equilibrium in all fragments in most of
the loci. The results indicated high gene diversity in the fragments and corridors positively correlated with the plant density (r = 0.742, R
2 = 0.551, d.f. = 4). We did not find evidence of inbreeding within fragments nor overall The genetic differentiation among remnants was low Evidence of recent bottlenecks by anthropogenic disturbance was detected in fragments (P < 0.05, Wilcoxon sign-rank test). The minimal viable population was estimated for conservation in situ, indicating fragments
with possibilities of maintaining genetic equilibrium diversity in the short term (except F3) and in the long term (only F5).
The ratios was also calculated to contribute to vegetation enrichment, area recovery or creation of new vegetation corridors.
We found high levels of gene diversity in the vegetation corridors, genetic identity with the fragments and absence of inbreeding.
Thus, our results suggest that landscape management strategies should therefore consider both the creation of new vegetation
corridors and the protection of extant ones. 相似文献
2.
Millions of coral reef fishes are collected each year for sale on the international aquarium market. Several marine ornamental species, including the Banggai cardinalfish, are biologically unsuitable for large-scale exploitation, yet their trade continues largely unmonitored. With little known about the Banggai cardinalfish or its trade, we interviewed trade participants from north and central Sulawesi, Indonesia, to document the organization, scale, and price structure of the species local collection and sale. Interviews revealed a large and growing commerce in Banggai cardinalfish, with at least 118,000 fish per month being sold in the Banggai region during the study period. Given the scale of the trade, the species restricted geographic range, and its natural susceptibility to exploitation, we propose that long-term monitoring is needed to safeguard Banggai cardinalfish populations and to serve as a much-needed example for monitoring and managing other marine ornamental fishes at risk of over-exploitation.
相似文献
M.-A. MoreauEmail: Phone: +1-514-3984111Fax: +1-514-3987437 |
3.
We analyzed the patterns of total, endangered and exotic fish species richness in 80 reservoirs throughout Japan using Generalized
Linear Models (GLMs) with variables of dam characteristics (e.g. reservoir size, isolated period, altitude, DO, pH, rainfall,
and air temperature) and watershed characteristics (e.g. watershed area, human population, and land-use patterns). Exotic
species richness was positively correlated with total species richness but negatively correlated with endangered species richness.
Largemouth bass, rainbow trout, and bluegill were the three most widely distributed species, occupying 47.5, 37.5, and 33.8%
of the reservoirs, respectively. The patterns of total and endangered species richness were largely explained by watershed
area and annual air temperature. Exotic species richness was determined primarily by the proportion of developed areas within
each watershed. Therefore, reservoirs in more developed areas tend to support more exotic fish species that in turn threaten
endangered fish species more severely.
相似文献
Takehiko FukushimaEmail: |
4.
Functional diversities of microorganisms in arctic soil samples at three incubation temperatures were assessed using sole-carbon-source-utilization (SCSU). Soil samples from four sites were collected from the rhizosphere and non-rhizosphere soils. Microorganisms were extracted from samples and inoculated into ECO-Biolog plates and incubated at 4, 10 and 28 °C. Calculations of Shannon–Weaver diversity and Shannon–Weaver evenness were based on the substrate utilization in the Biolog plates. Shannon–Weaver diversities (H) in rhizosphere samples were significantly greater (
H = 3.023 ± 0.197; P < 0.005) than in non-rhizosphere samples (
H = 2.770 ± 0.154). Similarly, the evenness (E) of the inoculated microbial cells exhibited significant differences (P < 0.005) between the rhizosphere and non-rhizosphere soil samples (
E = 0.880 ± 0.057 for soils with rhizosphere;
E = 0.807 ± 0.044 for non-rhizosphere samples). Higher microbial diversity and evenness were observed in samples incubated at 4 °C than at 28 °C [least significant difference (lsd) = 0.29], and evenness indices were higher in rhizosphere samples than in non-rhizosphere soils incubated at all three temperatures (lsd = 0.02). Principal component analysis (PCA) of the multivariate data set differentiated the soil samples on the relatively gross scale of microbial communities isolated from rhizosphere and non-rhizosphere soils at all three temperatures. 相似文献
5.
Ichthyofaunal diversity of the Dianshan lake in Shanghai, China was assessed during the year 2013 from samples of finfish harvested using fleets of gillnets and trawls of different mesh sizes with the aim of generating necessary data that could support sustainable use of finfish in this lake. Morphometric parameters of specimens caught were taken following standard procedures. Totally 21,308 specimens belonging to 40 species, 15 families and 7 orders were encountered throughout the study period. Seasonal abundance was lowest (395 individuals) during March (spring) and highest (4428 individuals) during August (summer). Cyprinidae was the dominant family (22 species) and Coilia ecetenes taihuensis was the most abundant species (30.69%), followed by Acheilognathus taenianalis (17.8618%), Plagiognathops microlepis (16.567%), Carassius auratus (14.492%). The evenness, richness and biodiversity of the faunal assemblage were also evaluated by Shannon–Wiener index (H′), Margalef’s diversity Index (d) and evenness index (J) respectively. Hypophthalmichthys nobilis was the largest and heaviest fish (34.909 cm, FL; 889.355 g, W), the smallest fish in length recorded was Odontamblyopus rubicundus (4.19 cm) while Plecoglossus altivelis altivelis (1.1 g) was the lowest in terms of mean weight. The mean condition factor for all fish species was (K = 1.72), showing fish species were generally in ‘good’ condition. Fluctuations in species occurrence and abundance noted in our study may be accounted from the variation in the physico-chemical parameters of the Lake in respect to time. But, under such a situation it is evident that the small fish species increased to a great extent and a few like Coilia ecetenes taihuensis became the dominant. 相似文献
6.
Michael H. Kido 《Environmental Biology of Fishes》2008,82(3):223-235
In Limahuli Stream on the Hawaiian island of Kauai, species assemblage structure was monitored from catchment-to-sea over
a 6-year period to determine how individual species utilized the stream continuum spatiotemporally. A persistent pattern was
identified in which ten fish and macroinvertebrate species (nine native and one alien) were distributed into distinct zones
of highest abundances with overlapping species ranges. Species diversity, as quantified by a dominance measure (Berger–Parker
Index), was highest and least variable at the midpoint of the continuum where upstream–downstream species’ ranges converged.
Reciprocal fluctuations in the population abundances of dominant species limited overall variation in species diversity to
a 22% range which was interpreted as evidence of spatiotemporal persistence of the species assemblage structure. The pattern
was captured in a testable, conceptual model which partitions an idealized Hawaiian stream from catchment-to-sea into five
functional zones (Estuarine, Lower–Middle–Upper Reach, and Headwaters) positioned as percentages of continuum length. This
model may be overlaid upon other Hawaiian streams for testing its applicability as well as to ask a variety of ecological
questions about the manner in which species partition habitat spatiotemporally along biophysical gradients.
相似文献
Michael H. KidoEmail: |
7.
John J. Wiens 《PLoS biology》2021,19(8)
The number of species on Earth is highly uncertain. A recent study has suggested that there are less than 2 million prokaryotic species on Earth; this Formal Comment suggests instead that there are more likely hundreds of millions or billions of species, and that the majority of these are bacteria associated with insects and other animals.The number of species on Earth is a fundamental number in science. Yet, estimates of global biodiversity have been highly uncertain. There are presently approximately 1.9 million described species [1]. Estimates of the actual number (both described and undescribed) have ranged from the low millions into the trillions [2,3]. Furthermore, described species richness [1] is dominated by animals (1.3 million; 68%), not bacteria (approximately 10,000 species; 0.5%). Larsen and colleagues [2] summarized evidence suggesting that the majority of species on Earth may be bacteria associated with insect hosts and that bacterial richness may push global biodiversity into the hundreds of millions of species or even low billions.Louca and colleagues [4] (LEA hereafter) have claimed instead that there are only 40,100 host-associated bacterial species among all animal species and 0.8 to 1.6 million prokaryotic species overall (see their “Author summary”). Strangely, they excluded bacterial species associated with animal hosts from their estimates of total prokaryotic diversity and justified this by claiming that the estimates of Larsen and colleagues [2] were “mathematically flawed.” Here, I examine their claims and present new estimates of global biodiversity.Remarkably, all projections by LEA for host-associated bacterial richness were based on an estimate from one ant genus (Cephalotes), an estimate that is demonstrably incorrect by orders of magnitude (S1 Text). Without examining the underlying data [5], LEA estimated only 40 bacterial species among all 130 ant species in this genus. Yet, simply counting the bacterial species among the 25 sampled ant species in that genus reveals 616 unique bacterial species, of which 539 appear to be unique to the genus and 369 each unique to a single ant species (using the standard 97% cutoff for 16S divergence and data from [5]). Thus, there were >500 bacterial species among 25 ant species, not 40 bacterial species among 130 ant species. This mistake was further exacerbated by inexplicably ignoring data from the other 2 insect genera analyzed by Larsen and colleagues [2], thus maximizing the impact of their incorrect estimate for this genus.Their overall estimate of bacterial richness was also strongly influenced by their questionable assumption that all animal genera can share bacterial species (i.e., reducing their estimate of 3 million host-associated bacterial species to only 40,100). They assumed “a conservative overlap of only 0.1% between any two randomly chosen genera” for the number of bacterial species shared between animal genera. No justification was given for this value of 0.1%, nor were any alternative values explored. Furthermore, they implicitly assumed that any bacterial species can be shared between any pair of animal genera, regardless of their phylogeny, habitat, or geographic range. So, for example, a bacterial species that is a gut endosymbiont of a terrestrial herbivorous insect species endemic to Madagascar could somehow be shared with a deep-sea worm in the northern Pacific Ocean. This is ridiculous: there must be a reason why bacterial species are shared among host species and genera (e.g., shared phylogeny, location, diet). For example, broad-scale studies show that sharing of bacteria among insect hosts is associated with both host phylogeny and diet [6].LEA stated “it is known that substantial overlap exists between the microbiota of different host genera and even of distantly related animal taxa.” However, they provided no numbers to justify this “substantial overlap.” In fact, none of the papers they cited as supporting this assumption actually do (S2 Text). For example, one study [7] found 5 bacterial species shared among 5 insect genera utilizing the same type of host plant (cycads). However, LEA do not mention that this study found 1,789 unique bacterial species among just these 5 insect species (or 177 after filtering). This seems inconsistent with their estimate of only 40,100 bacterial species across all animals. In summary, rather than estimating the overlap of bacterial species among host genera, LEA simply made a number up and combined this with unrealistic, unsupported assumptions about overlap. If LEA had considered Cephalotes (which all their estimates were based on), a survey of this genus and related genera [5] found 1,019 bacterial species, with only 77 of the 616 bacterial species in Cephalotes shared with other sampled genera, and the sharing of bacterial species among hosts strongly related to host phylogeny.Numerous surveys of bacterial diversity in insects strongly suggest that there are far more than 40,100 bacterial species among all animals (8] found roughly twice as many bacterial species as those of approximately 30 insect species [5,9], and the study of 218 insect species [6] found >3.5 times as many as the study of 62 insect species. The simple fact that a study found 9,301 bacterial species among only 218 sampled insect species strongly suggests that there are more than 40,100 bacteria among all animals.Table 1Surveys of bacterial diversity among insect species.LEA incorrectly estimated that a genus of 130 ant species (Cephalotes) hosts only 40 bacterial species and subsequently assumed that all animal genera have the same low number of bacterial species. These broad surveys of bacterial species among insects suggest that many insects (including Cephalotes) host much larger numbers of bacterial species.
Open in a separate windowGiven these problems with the estimate of LEA, what is the actual number of bacterial species on Earth? LEA were correct that Larsen and colleagues [2] only estimated the number of species-specific bacteria per insect host species, and those estimates could be wrong. I therefore recalculated those estimates based on more direct counts of species-specific bacteria from the original studies (S3 Text). In 2]. Specifically, Larsen and colleagues [2] projected 0.209 to 5.8 billion species on Earth, of which 66% to 91% are bacteria, whereas I project 0.183 to 4.2 billion, with 58% to 88% bacteria (2] and are explained below. For each scenario, the projected number of species for each group is shown, along with the percentage of the total number of species belonging to that group (note that plants are <0.5% and are rounded down to 0%). In addition to the 4 scenarios, 4 other assumptions were explored. The first 3 involve different estimated numbers of morphologically cryptic arthropod species per morphology-based insect species (from 6 to 2 to 0; for justification, see [2]). These impact the number of animal species, and all downstream estimates for other groups. The final, fourth set of analyses assumes 6 morphologically cryptic arthropod species and that mites host negligible numbers of nematode species. Scenario 1 assumes that all animal species have a full set of bacterial, protist, and fungal endosymbionts, even if they are parasites, but that microsporidian fungi and apicomplexan protists have little or no host-specific bacterial richness. Scenario 2 assumes that symbionts have limited numbers of symbionts themselves (i.e., nematodes have an average of only one host-specific bacterial species) and that microsporidians and apicomplexans have few or no bacterial species. Scenario 3 assumes that all animal species have a full set of symbiont species and that microsporidians and apicomplexans host (on average) as many bacterial species as animal species do. Scenario 4 is identical to Scenario 1, except that it assumes that mites have reduced species richness relative to other arthropods (0.25 mites∶1 other arthropod species). Note that there is an error in Table 3, Scenario 1 in Larsen and colleagues [2]: There should be 27.2 million animal species, not 20.4. The correct number is used here. Archaean species is considered to be limited overall [2], and so is not treated separately.
Open in a separate windowIn summary, the conclusions of LEA are based on an initial estimate of bacterial richness for one genus that was clearly incorrect, combined with a made-up number (and unrealistic assumptions) to estimate overlap of bacterial species among host genera. Reanalyses here suggest that bacterial richness (and the diversity of life) is more likely in the hundreds of millions or billions. 相似文献
Insect group sampled | Insect species sampled | Unique bacterial species found | References |
---|---|---|---|
Ants (Cephalotes and 3 related genera) | 29 | 1,019 | Sanders and colleagues [5] |
Lycaenid butterflies | 31 | 1,156 | Whitaker and colleagues [9] |
Native Hawaiian insects (beetles, flies, true bugs) | 13 | 1,094 | Poff and colleagues [10] |
Various insect orders | 62 | 2,073 | Colman and colleagues [8] |
21 insect orders | 218 | 9,301 | Yun and colleagues [6] |
Scenario 1 | Scenario 2 | Scenario 3 | Scenario 4 | |||||
---|---|---|---|---|---|---|---|---|
Million species | % of total | Million species | % of total | Million species | % of total | Million species | % of total | |
6 cryptic arthropod species | ||||||||
Animals | 163.2 | 9.4 | 163.2 | 13.7 | 163.2 | 3.9 | 102.0 | 9.4 |
Plants | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 |
Fungi | 165.6 | 9.6 | 165.6 | 13.9 | 165.6 | 3.9 | 104.6 | 9.6 |
Protists | 163.2 | 9.4 | 163.2 | 13.7 | 163.2 | 3.9 | 102.0 | 9.4 |
Bacteria | 1,240.3 | 71.6 | 701.8 | 58.8 | 3,721.0 | 88.3 | 775.2 | 71.5 |
Total | 1,732.7 | 1,194.1 | 4,213.3 | 1,084.1 | ||||
2 cryptic arthropod species | ||||||||
Animals | 54.4 | 9.4 | 54.4 | 13.6 | 54.4 | 3.9 | 34.0 | 9.4 |
Plants | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 |
Fungi | 56.8 | 9.8 | 56.8 | 14.2 | 56.8 | 4.0 | 36.4 | 10.0 |
Protists | 54.4 | 9.4 | 54.4 | 13.6 | 54.4 | 3.9 | 34.0 | 9.4 |
Bacteria | 413.4 | 71.4 | 233.9 | 58.5 | 1,240.3 | 88.2 | 258.4 | 71.1 |
Total | 579.4 | 399.9 | 1,406.3 | 363.1 | ||||
0 cryptic arthropod species | ||||||||
Animals | 27.2 | 9.3 | 27.2 | 13.5 | 27.2 | 3.9 | 17.0 | 9.3 |
Plants | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 |
Fungi | 29.6 | 10.2 | 29.6 | 14.7 | 29.6 | 4.2 | 19.4 | 10.6 |
Protists | 27.2 | 9.3 | 27.2 | 13.5 | 27.2 | 3.9 | 17.0 | 9.3 |
Bacteria | 206.7 | 71.0 | 117.0 | 58.1 | 620.2 | 88.0 | 129.2 | 70.6 |
Total | 291.1 | 201.3 | 704.5 | 182.9 | ||||
Mites host limited nematode richness, 6 cryptic arthropod species | ||||||||
Animals | 122.4 | 9.4 | 122.4 | 11.9 | 122.4 | 3.9 | 91.8 | 9.4 |
Plants | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 | 0.3 | 0 |
Fungi | 124.8 | 9.6 | 124.8 | 12.1 | 124.8 | 3.9 | 94.2 | 9.6 |
Protists | 122.4 | 9.4 | 122.4 | 11.9 | 122.4 | 3.9 | 91.8 | 9.4 |
Bacteria | 930.2 | 71.5 | 661.0 | 64.1 | 2,790.7 | 88.3 | 697.7 | 71.5 |
Total | 1,300.2 | 1,030.9 | 3,160.7 | 975.8 |
8.
Patterns of genome size diversity in the ray-finned fishes 总被引:1,自引:0,他引:1
The ray-finned fishes make up about half of all vertebrate diversity and are by far the best represented group in the Animal
Genome Size Database. However, they have traditionally been the least well investigated among vertebrates in terms of patterns
and consequences of genome size diversity. This article synthesizes and expands upon existing information about genome size
diversity in ray-finned fishes. Specifically, compiled data from the Animal Genome Size Database and FishBase are used to
examine the potential patterns of interspecific genome size variability according to ecology, environment, morphology, growth,
physiology, reproduction, longevity, and taxonomic diversity. Polyploidy and haploid genome sizes are considered separately,
revealing differences in their respective consequences. This represents the most comprehensive summary of fish genome size
diversity presented to date, and highlights areas of particular interest to investigate as more data become available.
相似文献
T. Ryan GregoryEmail: |
9.
John Greenman Nancy Hogg Suzanne Nikoletti Christopher Slade George Stevenson Martin Glennie 《Cancer immunology, immunotherapy : CII》1992,34(6):361-369
Summary The three forms of Fc receptor carried by monocytes (FcRI, II) and natural killer (NK) cells (FcRIII) are all capable of mediating cell lysis. Here we compare the use of F(ab)2 bispecific antibodies, specifically targetting individual FcR, and chimeric IgG mouse/human antibodies which are capable of targetting all FcR, for their ability to mediate target cell destruction. The derivatives are prepared by linking hinge sulphydryl residues via tandem thioether bonds, using a bismaleimide crosslinker: Fab from an anti-FcR mAb linked to Fab from a common anti-target mAb (BsAb), or Fab from the common anti-target mouse antibody linked to human Fc (FabFc or bisFabFc). All the derivatives targetting chick red blood cells gave efficient lysis, although different effector cell donors yielded differences in both the lytic levels achieved and the comparative efficiencies of derivatives. In contrast, significant lysis of the guinea pig lymphoblastic leukaemia, L2C, regularly resulted only via the anti-FcRIII BsAb and the chimeric derivatives. These results suggest that the chimeric, Fc-containing derivatives mediate tumour cell lysis principally through FcRIII on NK cells. This is in contrast to the situation with the chick red blood cells where the chimeric derivatives appear capable of lysing erythrocytes by utilizing either monocytes or NK cells, because significant (50%) lysis occurred with effector cell populations magnetically depleted through either FcRII or FcRIII. A major difference between these two types of antibody derivative was their ability to function in the presence of high concentrations of normal human Fc. The lysis mediated by BsAb reactive with FcRI or II was unaffected by the presence of human Fc at 2.5 mg/ml (a concentration comparable with that yielded by IgG in plasma) whereas the BsAb recognizing FcRIII and all the Fc-containing derivatives were completely inhibited.This work has been supported by Tenovus, the Cancer Research Campaign, the Leukaemia Research Fund, Italfarmaco, Milano, Italy and the Imperial Cancer Research Fund 相似文献
10.
11.
Antonio A. Pires Jorge L. Ramirez Pedro M. GalettiJr Waldo P. Troy Patricia D. Freitas 《Genetica》2017,145(3):335-340
The genus Zungaro contains some of the largest catfish in South America. Two valid species are currently recognized: Zungaro jahu, inhabiting the Paraná and Paraguay basins, and Zungaro zungaro, occurring in the Amazonas and Orinoco basins. Analysing Zungaro specimens from the Amazonas, Orinoco, Paraguay and Paraná basins, based on the sequencing of COI and D-loop, we found at least three MOTUs, indicating the existence of hidden diversity within this fish group. Considering the ecological and economic values of this fish, our results are surely welcomed for its conservation, disclosing new findings on its diversity and pointing out the necessity for a detailed taxonomic revision. 相似文献
12.