Smaug destroys a huge treasure

Smaug, a protein repressing translation and inducing mRNA decay, directly controls an unexpectedly large number of maternal mRNAs driving early Drosophila development.See related research, http://genomebiology.com/2014/15/1/R4Regulation of translation and mRNA stability is a key aspect of early metazoan development. One of the best studied factors involved in these processes is the Drosophila protein Smaug. In this issue of Genome Biology, Chen et al. [1] report that a large number of maternal mRNAs in the fly embryo are probably regulated directly by Smaug.     

Oligonucleotide recombination: a hidden treasure

In Swingle et al. we demonstrate that it is possible to use recombineering to direct a variety of changes in wild-type bacterial cells without the addition of phage-encoded proteins. This discovery is potentially applicable to biological engineering in a wide variety of bacterial species. Here we describe key features of oligo recombination as it is currently understood, and propose strategies for expanding the utility of oligo recombination for bioengineering.     

Basidiomycetes harbour a hidden treasure of proteolytic diversity

This survey is the first to investigate the proteolytic potential of a large number of basidiomycetes. Aqueous extracts of 43 basidiomycetes were investigated for their content of proteolytic activities, using gelatin zymography. The activities were characterised qualitatively using class specific inhibitors. All four catalytic classes of proteases were present, with 4% of all activities classified as aspartic, 5% as cysteine, 6% as metallo and 22% as serine proteases, while the remaining activities could not be assigned unambiguously. The majority of the latter were not inhibited by any of the inhibitors used and were termed insensitive. Different proteolytic activities are evenly distributed among members of all orders of basidiomycetes, although some taxa are a richer source of proteases than others. A significant number of the cysteine protease activities shown here have not previously been reported in basidiomycetes. The fungal cysteine and serine protease inhibitors, clitocypin and CNSPI (Clitocybe nebularis serine protease inhibitor), both inhibited a number of activities and even a few activities that were otherwise insensitive to all other inhibitors used, hence indicating their potential for a regulatory role. The number and diversity of proteases in basidiomycetes are seen to be remarkable and encourage further investigation.     

A treasure house of comparative embryology

The Embryo Collection of the Hubrecht Laboratory is a treasure house of comparative embryology. It is the largest and most important collection of its kind in the world, and consists of thousands of vertebrate embryos stored in alcohol, or prepared as histological sections. Many elusive species are included in the collection, some represented by complete developmental series. The accompanying archives offer a remarkable insight into the methods used to collect embryos form wild animals, as well as the motives behind the founders of the collection. Carefully maintained, documented and catalogued, the collection is available for study by all interested scientists. We argue that this collection is one of the greatest biodiversity resources in existence.     

Spread of hepatitis virus as a threat to national security

Information on viral hepatitis A, B and C morbidity in Russia is presented. A distinct trend to decreased viral hepatitis B and C morbidity in 2001-2002 in comparison with the 1990-ies is noted. Nevertheless, there is still unfavorable prognosis regarding high hepatitis B morbidity among the population of reproductive age, as well as among adolescents, which increases the risk for children at an early age. In addition, a new specific feature of hepatitis A spread is observed: morbidity in this infection is shifted to older age groups. The role of vaccinal prophylaxis in the decrease of hepatitis A and B morbidity, virus safety of blood and its components, the quality of the diagnostics of chronic hepatitis, especially hepatitis C, are discussed. The complex of measures for the prophylaxis of viral hepatitis is proposed.     

Decline in the Primary Productivity of Northwestern European Forests as a Consequence of Climate Aridization

Average annual age-dependent changes of carbon accumulation in the stemwood of major forest species (pine, spruce, and birch) of the taiga zone of the northwestern European Russia (Karelia) were analyzed. The changes in carbon accumulation were assessed by comparing carbon reserves in tree stands of various ages. Net primary productivity of photosynthesis (NPP) and the proportionality coefficient between respiratory decarboxylation and carbon reserves in wood were calculated. NPP clearly decreased with increasing climate aridization (aridity index). However, the time of the attainment of climax state by a stand did not depend on the latitudinal climate gradient. Hence, only the size of heterotrophic part of phytomass determines annual carbon losses in northern-taiga stands. It is concluded that the climate dependency of the long-term carbon storage in the phytomass of boreal forests is mainly determined by the climate effect on photosynthetic carbon sequestration.__________Translated from Fiziologiya Rastenii, Vol. 52, No. 4, 2005, pp. 513–517.Original Russian Text Copyright © 2005 by Voronin, Konovalov, Bolondinskii, Kaipiainen, Mao.     

A biological treasure metagenome: pave a way for big science

The trend of recent researches, in which synthetic biology and white technology through system approaches based on “Omics technology” are recognized as the ground of biotechnology, indicates the coming of the ‘metagenome era’ that accesses the genomes of all microbes aiming at the understanding and industrial application of the whole microbial resources. The remarkable advance of technologies for digging out and analyzing metagenome is enabling not only practical applications of metagenome but also system approaches on a mixed-genome level based on accumulated information. In this situation, the present review is purposed to introduce the trends and methods of research on metagenome and to examine big science led by related resources in the future.     

Green algae as a structural element of phytoperiphyton communities in streams of NW Russia

Observations were made on the development and distribution of phytoperiphyton communities in 66 lake-river systems in NW Russia from Lake Ladoga to the Barents Sea. In total, 130 genera and 648 species were identified from different substrates, belonging to Cyanophyta (19.1%), Bacillariophyta (59.6%), Chlorophyta (18.7%), and algae from other orders (2.6%). In all streams diatoms dominated by species richness, but they were surpassed by green algae in terms of biomass. The green algae ranged from small planktonic forms to large filamentous species and produced easily visible algal communities. Among the planktonic forms the desmids were the most diverse group. They occurred in attached communities of all rivers and, while never abundant, were widespread. The attached community’s biomass was dominated by green algae. Among these, the filamentous algae Mougeotia sp., Oedogonium sp., Zygnema sp., Spirogyra sp. and Ulothrix zonata exhibited mass development in streams. Their distribution was patchy in the basin, with a total cover varying from less than 1% to 90% of the stream bottom. In some river stretches the diversity and predominance of green algae could be due, in part, to poorly developed riparian canopies. The term periphyton adopted here follows the definition of Odum (1971): “Assemblages which include both plant and animal organisms growing attached to submerged objects”. The prefix phyto- is added to indicate that of the whole biocoenoses only phototrophs are considered in this study. Presented at the International Symposium Biology and Taxonomy of Green Algae V, Smolenice, June 26–29, 2007, Slovakia.     

Endophytic fungi from medicinal plants: a treasure hunt for bioactive metabolites

Endophytic fungi are ubiquitous organisms found in the plants, residing intercellular or intracellular, at least for a portion of their lives without causing apparent symptoms of infection. Almost all plants are known to harbor endophytes. The choice of the plant to be used for exploring endophytes for bioactives is important. Therefore, medicinal plants which are known to be used since centuries as an alternative source of medicine, are a valuable source for bioprospecting endophytes. Nevertheless, due to many reasons there is a dire need for novel resources for novel drugs which can be an answer to many deadly diseases. It is in this context that the present review was envisaged. The review reveals the importance of endophytic fungi from medicinal plants as a source of bioactive and chemically novel compounds. The bioactive metabolites produced by endophytic fungi originate from different biosynthetic pathways and belong to diverse structural groups such as terpenoids, steroids, quinones, phenols, coumarins etc. Endophytes therefore, represent a chemical reservoir for new compounds such as, anticancer, immunomodulatory, antioxidant, antiparasitic, antiviral, antitubercular, insecticidal etc. for use in the pharmaceutical and agrochemical industries. Although, efforts have been made to accommodate as many examples as possible but the depth of the subject is so vast that it cannot be covered in one single review. This in itself speaks of the fact that endophytic fungi from medicinal plants is indeed a treasure worth searching. In the present review only some selected examples have been covered.     

Tapping the treasure of intracellular oncotargets with immunotherapy

It is commonly believed that antibodies are too large (∼150 kDa) to access the intracellular compartment. Therefore, therapeutic antibodies have been traditionally used to target cell surface receptors or soluble proteins in the circulation, leaving a large intracellular treasure of potential cancer-specific targets untapped. This review offers new perspectives on our recently proposed concept that antibodies can be used to target intracellular tumor antigens for anti-cancer therapy. We propose to vastly expand the repertoire of potential targets for cancer immunotherapy since many excellent cancer targets are inside cells.     

Maize genetics: the treasure of the Sierra Madre

Massive morphological changes occurred during the domestication of maize from wild teosinte. Some of the most important shifts are due to altered expression patterns of major regulatory genes.