Preparation and crystal structure of two novel cadmium (II)-trimesates, Cd(HTMA)(NC5H5)2 · 0.5CH3OH · 0.5DMF and Cd(HTMA) · 2H2O

Two novel complexes, Cd(HTMA)(NC₅H₅)₂ · 0.5CH₃OH · 0.5DMF (1) and Cd(HTMA) · 2H₂O (2), of cadmium (II)-trimesates are obtained from slow vapor diffusion and urea hydrolysis, respectively. The Cd(II) centers in the two complexes are bridged by three separate HTMA³⁻ ligands using a same coordination fashion, which contains one monodentate and two chelating bidentate carboxyl groups to form the herringbone-like motif. The herringbone-like motif is further interlinked to construct the two-dimensional Cd(II)-HTMA layer, which is stacked by mutual π-stacking of pyridines for 1 and by hydrogen bond of waters for 2. Thermal stabilities of the two complexes were investigated and the results indicated that Cd(II)-TMA layers in the two complexes are stable still upon 190 °C.     

Synthesis and crystal structure of the low-spin iron(II) complex [Fe(bpz)3](ClO4)2 · H2O (bpz=2,2-bipyrazine)

The crystal structure of the title compound [Fe(bpz)₃](ClO₄)₂ · H₂O (bpz=2,2^′-bipyrazine) has been determined by a single crystal X-ray diffraction study at 293(2) K. The complex is monoclinic, P2₁/c, a=17.263(3), b=9.983(2), c=17.921(4) Å, β=107.94(3)°, V=2938.3(10) ų, Z=4, R=0.073 and R_w=0.118. The structure is made up of tris-chelated [Fe(bpz)₃]²⁺ cations, uncoordinated perchlorate anions and crystallization water molecules. The iron atom exhibits a FeN₆ distorted octahedral geometry with average Fe-N bond length and N-Fe-N bidentate angle of 1.962(5) Å and 81.6(2)°. The value of the Fe-N bond distance and that of the room temperature magnetic moment are in agreement with a singlet ¹A₁ ground state. The structure of 1 is compared to those of other tris-chelated iron(II) complexes with bidentate nitrogen heterocycles.     

K2[Zn(CV)2(H2O)2] · 2H2O: The first Zn(II) complex structurally characterized containing the pseudo-oxocarbon Croconate Violet (CV)

The synthesis, thermal behavior, spectroscopic characterization and crystal and molecular structure of a Zn(II) complex containing the pseudo-oxocarbon Croconate Violet (CV²⁻) dianion, namely K₂[Zn(CV)₂(H₂O)₂] · 2H₂O are reported. Thermal analysis has shown that the complex structure presents coordination and lattice water molecules. According to vibrational spectroscopy the Croconate Violet dianion is coordinated to Zn(II) center through the vicinal oxygen atoms in a chelating fashion with no involvement of CN moieties. The complex structure has been confirmed by single crystal X-ray diffraction analysis. The dianionic units [Zn(CV)₂(H₂O)₂]²⁻ adopt an slight distorted octahedral geometry in which the metallic center is surrounded by six oxygen atoms. These discrete dianionic units are connected through intermolecular hydrogen bonding giving rise to a supramolecular array extended along the crystallographic a axis.     

Investigation of the MSO4 · xH2O (M = Zn, x = 7; M = Cd, x = 8/3)/methyl 2-pyridyl ketone oxime reaction system: A novel Cd(II) coordination polymer versus mononuclear and dinuclear Zn(II) complexes

The reactions of methyl 2-pyridyl ketone oxime, (py)C(Me)NOH, with MSO₄ · xH₂O (M = Zn, x = 7; M = Cd, x = 8/3), in the absence of an external base, have been investigated. The synthetic study has led to the two new complexes [Zn(SO₄){(py)C(Me)NOH}(H₂O)₃] · H₂O (1 · H₂O) and [Zn₂(SO₄)₂{(py)C(Me)NOH}₄] · (py)C(Me)NOH [2 · (py)C(Me)NOH], and the coordination polymer [Cd(SO₄){(py)C(Me)NOH}(H₂O)]_n · [Cd(SO₄){(py)C(Me)NOH}(H₂O)₂]_n (3). In the three complexes the organic ligand chelates through its nitrogen atoms. The sulfate anion in 1 · H₂O is monodentate; the complex molecule is the mer isomer considering the positions of the aqua ligands. The Zn^II centers in 2 · (py)C(Me)NOH are bridged by two syn, anti η¹:η¹:μ₂ ligands; each metal ion has the cis-cis-trans disposition of the coordinated sulfate oxygen, pyridyl nitrogen and oxime nitrogens, respectively. The molecular structure of 3 is unique consisting of two different linear and ladder - type chains. π-π stacking interactions and/or hydrogen bonds lead to the formation of interesting supramolecular architectures in the three complexes. The thermal decomposition of complex 3 has been studied. Characteristic vibrational (IR, Raman) bands are discussed in terms of the nature of bonding and the structures of the three complexes.     

Solvent roles in metal ion coordination: the NiCl2O-solvates, NiCl2 · 4MeOH, NiCl2 · 2MeOH · 0.5dioxan and NiCl2 · 2H2O · 2dioxan

Low-temperature, single crystal X-ray structural characterisations of trans-[NiCl₂(HOMe)₄], trans-O-[Ni(MeOH)₂(μ-Cl)_(2/2)2]_(∞∣∞) · 0.5dioxan and trans-trans-[Ni(H₂O)₂Cl₂(O-dioxan-O)_(2/2)]_(∞∣∞) · dioxan are recorded, offering intriguing insights into O-donor/Ni(II) relativities. All nickel atoms in all structures are located on crystallographic inversion centres, the last two compounds being one-dimensional polymers.     

Square-planar copper(II) complexes with tetradentate amido-carboxylate ligands. Crystal structure of Na2[Cu(obap)]2 · 2H2O. Strain analysis and spectral assignments of complexes

Novel N-N-N-O-type of tetradentate ligands H₃obap (H₃obap = oxamido-N-aminopropyl-N′-benzoic acid) and H₃maeb (H₃maeb = malamido-N-aminoethyl-N′-benzoic acid) and the corresponding square-planar copper(II) complexes have been prepared and characterized. The obap³⁻ and maeb³⁻ ligands coordinate to the copper(II) ion via four ligating atoms (three deprotonated atoms: one carboxylate oxygen and two deprotonated amide nitrogens; one amine nitrogen) with in-plane square chelation. A four coordinate, square-planar geometry has been established crystallographically for the binuclear Na₂[Cu(obap)]₂ · 2H₂O complex. Structural data correlating the square-planar geometry of the [Cu(obap)]⁻ unit and an extensive strain analysis are discussed in relation to the information obtained for similar complexes. The infrared and electronic absorption spectra of the complexes are discussed in comparison to the related complexes of known geometries. Antibacterial activity of ligands and copper(II) complexes towards common Gram-negative and Gram-positive bacteria are reported as well.     

A new moisture-sensitive metal-coordination solids {[Cd(C4O4)(bipy)(H2O)2] · 3H2O}∞ (bipy=4,4-bipyridine)

A new mixed-ligands metal-coordination polymer, [Cd(C₄O₄)(bipy)(H₂O)₂] (1), (bipy=4,4^′-bipyridine), was synthesized under hydrothermal condition and characterized by X-ray diffraction method. A three-dimensional interpenetrating network with one-dimensional channels intercalating water molecules undergoes a reversible hydration-dehydration process upon a cooling-heating cycles associated with distinct color change and structural variation.     

Synthesis and structure of a lead(II)-citrate: {Na(H2O)3}[Pb5(C6H5O7)3(C6H6O7)(H2O)3]·9.5H2O

The reaction of lead(II) nitrate with trisodium citrate Na₃(C₆H₅O₇) in a 1:22.5 ratio at pH 4.8 provides crystals of {Na(H₂O)₃}[Pb₅(H₂O)₃(C₆H₅O₇)₃(C₆H₆O₇)]·9.5H₂O (1). The structure of 1 is two-dimensional and exhibits five distinct Pb(II) sites and four different modes of citrate bonding. The five lead sites all display hemidirected coordination geometries, that is, irregular distribution of neighboring oxygen atoms resulting in obvious gaps in the coordination spheres. Consequently, the lead coordination geometries exhibit proximal bonding to a number of oxygen donors, as well as distal interactions with nearest neighbors. The coordination numbers vary from 8 to 10, with ‘5+3’, ‘5+4’, ‘6+4’ and ‘7+3’ coordination modes where the first number refers to the proximal ligands and the second to the distal set. The four crystallographically distinct citrate groups include three with deprotonated carboxylate groups (C₆H₅O₇)³⁻ and one with a single protonated carboxyl group (C₆H₆O₇)². The citrate ligands bridge 3, 5, 7 and 7 lead sites. Three of the citrate groups exhibit tridentate chelation coordination to a lead site through two carboxylate oxygen donors and the hydroxyl groups. One citrate group projects an uncoordinated -OH group and a pendant protonated carboxyl group into the interlamellar domain. This latter carboxyl group coordinates to a sodium cation, which exhibits five coordinate geometry defined by three aqua ligands and the carbonyl oxygen of the -CO₂H groups in the basal plane and a citrate -OH donor in the apical position.     

Syntheses, characterizations and crystal structures of two lead(II) diphosphonates: Pb2[NH(CH2PO3)2] · 2H2O and Pb3[HO2C(CH2)3NH(CH2PO3)2]2 · 2H2O

Hydrothermal reactions of lead(II) acetate and HO₂C(CH₂)₃N(CH₂PO₃H₂)₂ at 170 and 140 °C, respectively, resulted in two different lead diphosphonates, namely, Pb₂[NH(CH₂PO₃)₂] · 2H₂O (1), in which the butyric acid moiety of the HO₂C(CH₂)₃N(CH₂PO₃H₂)₂ has been cleaved and a novel layered compound, Pb₃[HO₂C(CH₂)₃NH(CH₂PO₃)₂]₂ · 2H₂O (2). Their crystal structures have been determined by single crystal X-ray diffraction. In compound 1, the interconnection of the lead(II) ions by bridging amino-diphosphonate ligands leads to the formation of a 3D network. Compound 2 features an unusual triple-layer structure with the non-coordinated butyric acid moieties as pendant groups between the layers.     

Mg-activated double-stranded DNA cleavage by [(bpy)2(OH2)Ru---O---Ru(H2O) (bpy)2]

The reaction of the title complex with DNA has been examined. Addition of [(bpy)₂(OH₂)RuORu(OH₂) (bpy)₂]⁴⁺ to DNA leads to the reduction of the complex to Ru(bpy)₂(OH₂)₂²⁺, as indicated by absorption spectroscopy and cyclic voltammetry. The reaction is accelerated by Mg²⁺. The combined evidence points to a mechanism where the oxo-bridged dimer is hydrolyzed to a monomeric Ru(III) complex that is capable of oxidizing DNA to effect strand scission. Gel electrophoresis demonstrates nicking of supercoiled /gfX174 DNA by [(bpy)₂(OH₂)RuORu(OH₂) (bpy)₂]⁴⁺, and double-stranded cleavage is observed in the presence of Mg²⁺. Linearization of the plasmid prior to treatment with the complex does not lead to further fragmentation, suggesting that supercoiling is required to realize double-stranded cleavage.     

Long-range superexchanged magnetic interaction observed in heterometallic complex: {[Fe(Tpms)(CN)3][Mn(H2O)2(DMF)2]} · DMF

A new tri-cyanometalate building block for heterometallic complexes, [PPh₄]₂[Fe^II(Tpms)(CN)₃] (2) (PPh₄ = tetraphenylphosphonium; Tpms = tris(pyrazolyl) methanesulfonate), has been prepared. Using it as a building block, a one-dimensional chain compound, {[Fe^II(Tpms)(CN)₃][Mn^II(H₂O)₂( DMF)₂]} · DMF (3), has been synthesized and structurally characterized. The magnetic properties of 3 correspond to a ferromagnetic chain with weak long-range superexchanged magnetic interaction between the high-spin manganese(II) ions.     

Synthesis, characterization, crystal structures and magnetic properties of dissymmetrical double schiff base heterotrinuclear complexes: [CuL(H2O)CoCuL] · H2O · CH3OH and [(CuL)2Ni] · 2H2O

A dissymmetrical double Schiff base Cu(II) mononuclear complex: CuHL (1) (where H₃L is N-3-carboxylsalicylidene-N^′-salicylaldehyde-1,2-diaminoethane) and two trinuclear complexes: [CuL(H₂O)CoCuL] · H₂O · CH₃OH (2) and [(CuL)₂Ni] · 2H₂O (3) have been synthesized and characterized by means of elemental analyses, IR and electronic spectra. The crystal structures of two heterotrinucler complexes were determined by X-ray analysis. Each dissymmetrical cell unit of the complex 2 contains two heterotrinucler neutral molecules. In each neutral molecule, the central Co²⁺ ion is located at the site of O₆ with a distorted octahedral geometry and one terminal Cu²⁺ ion at the four-coordination site of N₂O₂, but the other one at the square-pyramidal environment of N₂O₃. Each dissymmetrical unit of the complex 3 contains a heterotrinucler neutral molecule, whose structure is similar to that of 2 except two terminal Cu²⁺ ions both at the inner site of N₂O₂. The magnetic properties of two heterotrinucler complexes have been determined in the temperature range of 5-300 K, which indicate that the interaction between the central Co²⁺ ion or Ni²⁺ ion and the outer Cu²⁺ ions is antiferromagnetic. The exchange integrals are equal to −26.2 cm⁻¹ for 2 and −50.6 cm⁻¹ for 3.     

3D hydrogen bonded metal-organic frameworks constructed from [M(H2O)6][M′(dipicolinate)2] · mH2O (M/M′ = Zn/Ni or Ni/Ni). Identification of intercalated acyclic (H2O)6/(H2O)10 clusters

New heterodinuclear Zn^II/Ni^II (1) and homodinuclear Ni^II/Ni^II (2) water-soluble and air stable compounds of general formula [M(H₂O)₆][M′(dipic)₂] · mH₂O have been easily prepared by self-assembly of the corresponding metal(II) nitrates with dipicolinic acid (H₂dipic) in water solution at room temperature.  The compounds have been characterized by IR, UV/Vis and atomic absorption spectroscopies, elemental and X-ray single crystal diffraction (for 1 · 4H₂O and 2 · 5H₂O) analyses.  3D infinite polymeric networks are formed via extensive hydrogen bonding interactions involving all coordinated and crystallization water molecules, and all dipicolinate oxygens, thus contributing to additional stabilization of dimeric units, metal-organic chains and 2D layers.  In 1 · 4H₂O, the latter represent a rectangular-grid 2D framework with multiple channels if viewed along the c crystallographic axis, while in 2 · 5H₂O intercalated crystallization water molecules are associated to form acyclic nonplanar hexameric water clusters and water dimers which occupy voids in the host metal-organic matrix, with a structure stabilizing effect via host-guest interactions.  The hexameric cluster extends to the larger (H₂O)₁₀ one with an unusual geometry (acyclic helical octamer with two pendent water molecules) by taking into account the hydrogen bonds to water ligands in [Ni(H₂O)₆]²⁺.  The obtained Zn/Ni compound 1 relates to the recently reported family of heterodimetallic complexes [M(H₂O)₅M′(dipic)₂] · mH₂O (M/M′ = Cu/Co, Cu/Ni, Cu/Zn, Zn/Co, Ni/Co, m = 2, 3), what now allows to establish the orders of the metal affinity towards the formation of chelates with dipicolinic acid (Co^II > Ni^II > Zn^II > Cu^II) or aqua species (Co^II < Ni^II < Zn^II < Cu^II).     

Zinc complexes of 6-methyl-2-pyridinecarboxylic acid. Crystal structure of [Zn(MeC5H3NCOO)2(H2O)] · H2O

Reaction of Zn(AcO)₂ · 2H₂O with 6-methyl-2-pyridinecarboxylic acid (L) yielded a new compound [Zn(MeC₅H₃NCOO)₂(H₂O)] · H₂O. This complex was characterised by elemental analyses, conductivity measurements, infrared, ¹H and ¹³C{¹H} NMR spectroscopies and single-crystal X-ray diffraction. The crystal structure consists of discrete molecules involving a pentacoordinated Zn atom with a geometry intermediate between a trigonal bipyramid and a square pyramid and with the two N_py atoms occupying the apical sites. Treatment of the complex [Zn(MeC₅H₃NCOO)₂(H₂O)] · H₂O with 2,2^′-bipyridine (bpy) produced [Zn(MeC₅H₃NCOO)₂(bpy)]. The metallic atom in this complex displays a distorted octahedral geometry and is coordinated to two ligands (L) via the pyridine nitrogen and the carbonyl oxygen atoms and to one 2,2^′-bypyridine (bpy).     

Homoleptic platinum(II) and palladium(II) complexes of 1,5,9-trithiacyclododecane: the crystal structures of [Pt(12S3)2](PF6)2 · 2CH3NO2 and [Pd(12S3)2](BF4)2 · 0.5H2O

The synthesis, spectroscopy, electrochemistry, and crystal structures of two new mononuclear homoleptic Pt(II) and Pd(II) complexes with the crown trithioether 1,5,9-trithiacyclododecane (12S3) are reported. In contrast to behavior with analogous smaller ring trithiacrowns, both metal complexes exhibit exodentate axial sulfur donors, a consequence of the preferred conformation of the 12S3 ligand. The lack of two axial metal-sulfur interactions correlates with the observed electronic spectroscopy and oxidative electrochemistry displayed by the complexes and contrasts with properties exhibited by complexes containing smaller polythioether macrocycles. The two complexes have electronic spectra dominated by charge transfer, not d-d bands and show no M²⁺/M³⁺ couples. Both complexes show a fluxional 12S3 ligand in solution due to a 1,5-metallotropic shift, an uncommon observation of this particular type of intramolecular ligand exchange. The ¹⁹⁵Pt NMR chemical shift of −4201 ppm for [Pt(12S3)₂]²⁺ is consistent with an alternating positioning of the four sulfur lone pairs on the coordinated thioethers. Although 12S3 is poorly pre-organized for facial complexation, its flexibility to position a sulfur in an exodentate fashion enables it to form stable complexes with d⁸ metal ions such as Pt(II) and Pd(II).     

Solvothermal synthesis, crystal structure and magnetic property of a new dinuclear manganese(II)-azido complex: [Mn(2,2′-dpa)(N3)2]2 (2,2′-dpa = 2,2′-dipicolylamine)

A new dinuclear manganese(II)-azido complex: [Mn(2,2′-dpa)(N₃)₂]₂1 (2,2′-dpa = 2,2′-dipicolylamine) has been synthesized solvothermally. X-ray crystallography analysis reveals that it consists of two crystallographically independent dimeric manganese moieties; each manganese(II) atom is coordinated by one 2,2′-dipicolylamine, one terminal azido ligand, and double end-on bridging azido ligands, exhibiting a slightly distorted octahedral sphere. There are extensive short contacts among dimeric manganese moieties, which extend the structure into an interesting three-dimensional supramolecular array. Magnetic determination of 1 indicates that dominant ferromagnetic interaction and weak antiferromagnetic interaction, which are ascribed to the end-on azido bridges and the short contacts, respectively, co-exist in this complex.     

A novel ferromagnetic coupling one-dimensional complex {Cu(II)(NIT3Py)2[N(CN)2]2(H2O)2}

The novel ferromagnetic coupling one-dimensional complex {Cu(NIT3Py)₂[N(CN)₂]₂(H₂O)₂} (NIT3Py=2-(3^′-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide) was synthesized and characterized structurally and magnetically. It crystallizes in the monoclinic space group C2/c. The Cu(II) ion is in a distorted octahedral environment. The units of {Cu(NIT3Py)₂[N(CN)₂]₂(H₂O)₂} were connected as one-dimensional structure by the intermolecular hydrogen bonds. Magnetic measurements show that there are intramolecular ferromagnetic interactions and intermolecular antiferromagnetic interactions within the chain.     

Conformational flexibility of 2,6-bis(pyrazol-1-ylmethyl)pyridine (L) in [(L)Co(H2O)3]Cl2 and [(L)Ni(H2O)2Cl]Cl·H2O. Molecular structures and non-covalent interactions

Using a non-planar tridentate ligand 2,6-bis(pyrazol-1-ylmethyl)pyridine (L⁵) two new coordination complexes [(L⁵)Co^II(H₂O)₃]Cl₂ (1) and [(L⁵)Ni^II(H₂O)₂Cl]Cl·H₂O (2) have been synthesized and structurally characterized. Complex 1 has N₃O₃ distorted octahedral environment around Co^II with coordination by L⁵ (two pyrazole and a pyridine nitrogen in a facial mode) and three water molecules. Complex 2 has N₃O₂Cl distorted octahedral geometry around Ni^II with meridional L⁵ coordination, two water molecules, and a Cl⁻ ion. Analysis of the crystal packing diagram reveals the involvement of solvent (water as metal-coordinated and as solvent of crystallization) and counteranion (Cl⁻) to play significant roles in generating 1D chains, involving O-H···Cl, and O-H···O interactions.     

Synthesis and characterization of Fe(III)(3-CH3O-qsal)2PF6 · nH2O (n = 0, 2)

Compounds Fe^III(3-CH₃O-qsal)₂PF₆ · nH₂O (n = 0, 2) (1, 1 · 2H₂O) were synthesized and characterized: the structure of 1 and the magnetic properties of both compounds were determined. Compound 1 · 2H₂O presents properties characteristic of high-spin Fe(III), while 1 presents properties of low-spin Fe(III) with an onset of a gradual spin crossover at ca. 300 K.     

Meso-[{Ru(phen)2}2(μ-bpm)]: A high-affinity DNA bulge probe {bpm = 2,2′-bipyrimidine; phen = 1,10-phenanthroline}

The binding of the stereoisomers of [{Ru(Me₂bpy)₂}₂(μ-bpm)]⁴⁺, [{Ru(phen)₂}₂(μ-bpm)]⁴⁺ and [{Ru(Me₂phen)₂}₂(μ-bpm)]⁴⁺ (Me₂bpy = 4,4′-dimethyl-2,2′-bipyridine; bpm = 2,2′-bipyrimidine; phen = 1,10-phenanthroline; Me₂phen = 4,7-dimethyl-1,10-phenanthroline) to a tridecanucleotide d(CCGAGAATTCCGG)₂ which contains a single adenine bulge site, and four control dodecanucleotides, have been studied using a fluorescence intercalator displacement (FID) assay. The meso isomer of [{Ru(phen)₂}₂(μ-bpm)]⁴⁺ showed the strongest binding to the bulge-containing tridecanucleotide. In order to gain a greater understanding of the basis of the higher affinity exhibited by the meso isomer towards the bulge sequence, a ¹H NMR study of the binding of the two enantiomers (ΔΔ and ΛΛ) of rac-[{Ru(phen)₂}₂(μ-bpm)]⁴⁺, and the, meso (ΔΛ) diastereoisomer, to the tridecanucleotide d(CCGAGAATTCCGG)₂ was carried out. The NMR results suggest that the meso isomer binds selectively at the bulge site in the tridecanucleotide minor groove, but closer to the 3′-direction and with less structural perturbations of the groove than the ΔΔ and ΛΛ isomers. The results of this study confirm that dinuclear ruthenium complexes have excellent potential as DNA bulge probes, and meso-[{Ru(phen)₂}₂(μ-bpm)]⁴⁺ in particular has a high affinity (1 × 10⁶ M⁻¹) and selectivity for a single adenine bulge site.