西藏巨柏核型的图象自动分析与识别的研究

我们应用图象自动分析和识别的原理和方法,建立了植物染色体自动分析CHROMHUK软件系统,并首次对西藏巨柏进行了核型自动分析,抽取了染色体多个特征多数:相对长度、臂比、着丝点指数、相对体密度和次缢痕相对长度.对247个巨柏体细胞进行多参数数据统计和分析,并设置95°.置信判别区域和树分类判别.实现了染色体自动配对和分类,并由计算机直接输出染色体的组型图和核型模式图.分析结果表明:巨柏体细胞的染色体数目为2n=22,按Levan的分类标准,其核型公式为2n=4m(SC)+16m+2sm.据Stabbins分类为1A型.     

植物染色体图象分析数据库在芸苔族分类研究中的应用

本文首次用电脑图象分析手段对芸苔族5属13种植物进行了核型分析。其中蓝花子Raphanus;sativus var．raphanistroides、白芥Sinapis alba等植物的核型分析结果,都是国内外首次报道的。笔者建立了十字花科芸苔族植物的染色体数据库,这是国内外第一个专科性的植物染色体图象分析数据库,并且首次将染色体图象分析数据库应用于分类学研究。例如,比较分析芸苔族植物种间的亲缘关系和分类地位,以及探索物种之间的演化关系,得到了若干新的核型论据。笔者认为,植物染色体图象分析数据库在植物分类学研究中具有应用前景。     

黄扯旗鱼核型分析方法及核型特征

本研究的目的在于建立黄扯旗鱼(Pristella maxillaris)的核型分析方法,以了解该物种的染色体数目、形态及分类等遗传学特征。比较头肾-PHA法和胚胎制片法制备黄扯旗鱼染色体样品的异同。结果发现,头肾-PHA法难度较大,操作复杂且制备的分裂相细胞数目较少;而胚胎法操作简单,用时短,制备的分裂相细胞稳定且数目多。随后基于胚胎制片法利用Photoshop CS5和image J软件进行了黄扯旗鱼的核型分析。统计结果表明,黄扯旗鱼核型为2n=52=6m+12sm+34t,NF=70,且未发现多倍体、异型性染色体及随体染色体的现象。     

Stylized chromosome images

Stylized chromosome images 1) serve as a format to test effects of preprocessing algorithms used in automated karyotyping; 2) enhance the ability of humans to perform quantitative analysis of chromosomal aberrations; 3) provide an alternative format for karyotype hard copies produced by automated systems. Stylized chromosomes are two-dimensional computer-generated images based on information extracted from one-dimensional width and density profiles. These profiles correspond to what cytogeneticists observe through the microscope as the shape and banding patterns of stained chromosomes. Stylized presentation sharpens chromosome band boundaries and perimeters, reduces "noise," and enhances gray level variations, which are difficult to distinguish by humans on photographic or computer generated karyotypes. Karyotyping accuracy using stylized images was used to detect difficult areas for automated chromosome identification. Landmark bands sufficient to classify chromosomes were identified; shapes of chromosomes reflected in width profiles were said to aid classification. A two-step automated karyotyping strategy proposed is: 1) classify chromosomes by landmarks, minimum information needed for identification; 2) subsequently employ the full banding pattern with maximum resolution to detect aberrations. Stylized images of abnormal chromosomes have potential for testing hypothesis regarding breakpoints and quantitative analysis, but improvements are needed in homologue normalization and definition of termini of chromosomes.     

Comparative genomics: tracking chromosome evolution in the family ursidae using reciprocal chromosome painting

The Ursidae family includes eight species, the karyotype of which diverges somewhat, in both chromosome number and morphology, from that of other families in the order Carnivora. The combination of consensus molecular phylogeny and high-resolution trypsin G-banded karyotype analysis has suggested that ancestral chromosomal fissions and at least two fusion events are associated with the development of the different ursid species. Here, we revisit this hypothesis by hybridizing reciprocal chromosome painting probes derived from the giant panda (Ailuropoda melanoleuca), domestic cat (Felis catus), and man (Homo sapiens) to representative bear species karyotypes. Comparative analysis of the different chromosome segment homologies allowed reconstruction of the genomic composition of a putative ancestral bear karyotype based upon the recognition of 39 chromosome segments defined by painting as the smallest conserved evolutionary unit segments (pSCEUS) among these species. The different pSCEUS combinations occurring among modern bear species support and extend the postulated sequence of chromosomal rearrangements and provide a framework to propose patterns of genome reorganization among carnivores and other mammal radiations.     

西藏野生大麦染色体N带带型的图象纹理自动分析

应用图象自动分析和纹理识别的原理,建立了染色体带型自动分析软件系统对西藏野竹黑稃大麦带带型进行了计算机自动分析,准确,快速地获得染色体的带型图和带型模式图。     

Clinical performance of a system for semiautomated chromosome analysis.

Until recently equipment for automated chromosome analysis has not been used for routine purposes in clinical cytogenetic laboratories. During a 3 1/2-year period the chromosome laboratory of Rigshospitalet has tested the Magiscan chromosome system under routine conditions and performed the first evaluation of its clinical performance. The system consists of an image processor with a light pen for manual interaction connected to a hard-copy printer and a microscope with a TV camera and a motorized scanning stage for eight slides. Automated metaphase finding takes place without operator assistance. An operator is involved in the analysis after the metaphases are located. Using two of these complete systems, we have performed a total of 4,691 chromosome analyses comprising a count of 10 metaphases, of which three were "eyeball" karyotyped and one was "machine" karyotyped. Presently, two-thirds of our prenatal analyses (amniotic-cell cultures) are carried out with these two machines. A third Magiscan system without scanning stage is used as a "karyotyping-only" system to produce hard-copy karyograms in those cases in which metaphases are manually located and counted in the microscope. Since the end of 1984, 4,773 additional machine karyograms have been produced with this system. With a complete system, a prenatal analysis can be carried out in an average of 35 min. The average time for a machine karyotype is 7 min. Since 1984 the productivity of the laboratory has increased 17%-20% without enlarging the staff.     

活血莲的核型分析

对活血莲的染色体数目及核型进行了研究,结果表明,活血莲的染色体数目为２ｎ＝６０,其核型公式为２ｎ＝２ｘ＝６０＝４６ｓｍ＋１２ｓｔ＋２ｍ。没有观察到带随体的染色体。     

Cytological investigation of Haplopappus gracilis (Nutt.) Gray: 5-methylcytosine-rich regions, fluorochrome banding and chromatin sensitivity to DNase I digestion

Haplopappus gracilis (Nutt.) Gray, one of the five known higher plants with a chromosome number of 2n = 4, was studied from a cytological point of view. The chromosome complement of this species was characterized by means of automated karyotype analysis. Moreover, the DNA methylation pattern and fluorochrome banding were determined and compared with cytological data present in the literature. DNA methylation distribution along metaphase chromosomes involved all chromosome territories evidenced by C-banding. Other methylated bands correlated positively with aceto-orcein-positive heterochromatic portions and/or with late replicating bands and/or fluorochrome bands. Some methylated bands showed differences between homologous chromosomes. These bands belonged partly to certain heterochromatic domains and partly to intercalary sites not defined by other standard banding techniques. Differences between the homologues were also indicated by our DNA content data obtained after DNase I digestion.     

活血莲的核型分析

对活血莲的染色体数目及核型进行了研究,结果表明;活血莲的染色体数目为2n=60,其核型公式为2n=2x=60=46sm+12st+2m,没有观察到带随体的染色体。     

Pattern recognition software and techniques for biological image analysis

The increasing prevalence of automated image acquisition systems is enabling new types of microscopy experiments that generate large image datasets. However, there is a perceived lack of robust image analysis systems required to process these diverse datasets. Most automated image analysis systems are tailored for specific types of microscopy, contrast methods, probes, and even cell types. This imposes significant constraints on experimental design, limiting their application to the narrow set of imaging methods for which they were designed. One of the approaches to address these limitations is pattern recognition, which was originally developed for remote sensing, and is increasingly being applied to the biology domain. This approach relies on training a computer to recognize patterns in images rather than developing algorithms or tuning parameters for specific image processing tasks. The generality of this approach promises to enable data mining in extensive image repositories, and provide objective and quantitative imaging assays for routine use. Here, we provide a brief overview of the technologies behind pattern recognition and its use in computer vision for biological and biomedical imaging. We list available software tools that can be used by biologists and suggest practical experimental considerations to make the best use of pattern recognition techniques for imaging assays.     

Chromosome maps of the plant family Trilliaceae: nucleotide composition of heterochromatin an localization of 18S-26S rRNA-genes of four-leafed paris (Paris quadrifolia L.)

Using nucleotide-specific agents Hoechst 33258, actinomycin D, chromomycin A3, and distamycin A, the Paris quadrifolia L. karyotype, and the location and nucleotide composition of heterochromatic bands were studied. The chromosome ideogram of H33258/AMD and CMA/DA heterochromatic bands was created by an image analysis system with the Videotest-Kario software. By fluorescence in situ hybridization, the 18S and 26S rRNA genes were mapped.     

三种紫金牛属植物的核型研究

对紫金牛属三种植物进行了核型分析,其中朱砂根染色体数目2n=46、核型2n=46=42m+2sm+2st和紫金牛核型2n=92=58m+24sm+10st为首次报道;虎舌红核型公式为2n=44=40m+2sm+2st。核型分析结果显示,紫金牛属植物存在染色体数目非整倍体变异及多倍化的进化方式。     

华中五味子染色体制片优化及核型分析

比较不同预处理和解离方法对华中五味子染色体制片的影响,采用华中五味子的萌发芽、新枝茎尖、幼叶等不同部位进行染色体制片,观察500个细胞,比较不同部位中期细胞和适宜核型分析的中期细胞所占比例,结果显示,0.1%秋水仙素预处理1 h、1 mol/L盐酸常温解离12 min制片所得染色体分散效果最佳。5~15 mm幼叶侧边组织制片最适宜华中五味子核型分析。核型公式为2n=2x=28=26 m 2sm,核型不对称系数(As.k)为56.30%,属于1B类型,核型对称性程度高,表明华中五味子在进化中处于比较原始类型。     

The Athena semi-automated karyotyping system

In this article we describe Athena, a system that provides for semi-automated karyotyping of metaphase spreads. The system is based upon the Macintosh II computer. It uses software that is written entirely in C and consists of approximately 200 Kbytes of executable code. Athena provides automated segmentation of metaphase images into individual chromosomes, automated measurements on each banded chromosome, and automated classification into the standard Paris-convention karyotype. Furthermore, the system provides the ability to construct one or more chromosome data bases to represent the types of metaphase spreads and staining techniques that may be used in a given laboratory. Because we believe that it is impossible to construct a system that can achieve perfect segmentation, perfect separation of touching and overlapping chromosomes, perfect localization of the centromeres, and perfect classification, the system offers the possibility for interaction at each of the above stages using the well-accepted Macintosh user interface.     

C-banding patterns in chromosomes and sperm of Strophosoma capitatum (De Geer, 1775) (Coleoptera: Curculionidae, Brachyderinae)

An analysis was made of the C-banded karyotype of Strophosoma capitatum (Deg.). The results indicate that the chromosome number is 2n = 22 and n Male = 10 + Xyp. The examined karyotype shows a pericentromeric position of constitutive heterochromatin in all autosomes. The shorter arm of the X chromosome is heterochromatic while the y chromosome is wholly euchromatic. Successive stages of spermatogenesis were analysed.     

杂交鳢(斑鳢 ♀ ×乌鳢 ♂ )及其自交后代细胞核型初步分析

对杂交鳢(斑鳢♀×乌鳢♂)(Channa maculata ♀×C.argus ♂)及其自交后代的细胞核型进行了初步分析.结果表明,杂交鳢染色体数目为2n=45,核型公式为3m+4sm+6st+32t,染色体臂数(NF)为52;杂交鳢自繁后代群体存在两种染色体核型,一是染色体数目为45,核型公式为3m+4sm+6st+...     

Variation in the relative length of chromosomes in mammalian karyotypes. Hypothesis of equalizing selection

A hypothesis on the selective neutrality of relative lengths of karyotype chromosomes was tested. Idiograms expected based on an assumption of selective neutrality of chromosome lengths were compared with actual idiograms in more than a hundred mammalian species. The observed idiograms differed from those expected in a similar manner: in the observed idiograms, the longest chromosomes were shorter, and the shortest were longer than expected. It is suggested that karyotype chromosome variation is limited by selection against chromosome rearrangements that produce very long or very short chromosomes. An analysis of reciprocal translocations in the mouse and Drosophila showed that translocations generating chromosomes of extreme lengths were more deleterious than those generating normal-sized chromosomes. A working hypothesis was advanced stating that within-karyotype variation of chromosome lengths is accounted for by two factors: chromosome rearrangements and natural selection. Chromosome rearrangements tend to randomize relative chromosome lengths in a karyotype, whereas natural selection acts to equalize them.     

The DNA-based human karyotype

Image cytometry and computer analysis are used to determine the relative DNA content and the DNA-based centromeric index of the 24 chromosomes of the human karyotype. A two-step procedure is used. Chromosomes of cells in metaphase first are stained with quinacrine and identified visually by their fluorescent Q-band patterns. They then are stained for DNA using gallocyanin-chrome alum. The chromosome images are scanned and recorded as digital values of optical density by an CYDAC image cytometric microscope system, CYDAC. The digital images are processed by computer to measure for each chromosome the relative DNA stain contents of the whole chromosome and of the p and q arms and the DNA-based centromeric index. About ten cells are analyzed for each of the donors, who are phenotypically normal men and women. The chromosome measurements are pooled by chromosome type for each donor and are compared among donors. The means of the chromosome measurements give the DNA-based human karyotype. Analysis of the DNA-based data shows that some chromosomes or portions of chromosomes vary significantly among donors. These variants do not correlate with detectable morphologic polymorphisms, such as Q- or C-band variants; thus they represent new and otherwise undetectable chromosome polymorphisms whose genetic basis and clinical significance are yet to be determined.