The role of plant type and salinity in the selection for the denitrifying community structure in the rhizosphere of wetland vegetation

Coastal wetlands, as transient links from terrestrial to marine environments, are important for nitrogen removal by denitrification. Denitrification strongly depends on both the presence of emergent plants and the denitrifier communities selected by different plant species. In this study, the effects of vegetation and habitat heterogeneity on the community of denitrifying bacteria were investigated in nine coastal wetlands in two preserved areas of Spain. Sampling locations were selected to cover a range of salinity (0.81 to 31.3 mS/cm) and nitrate concentrations (0.1 to 303 μM NO3-), allowing the evaluation of environmental variables that select for denitrifier communities in the rhizosphere of Phragmites sp., Ruppia sp., and Paspalum sp. Potential nitrate reduction rates were found to be dependent on the sampling time and plant species and related to the denitrifier community structure, which was assessed by terminal restriction fragment length polymorphism analysis of the functional genes nirS, nirK and nosZ. The results showed that denitrifier community structure was also governed by plant species and salinity, with significant influences of other variables, such as sampling time and location. Ruppia sp. and Phragmites sp. selected for certain communities, whereas this was not the case for Paspalum sp. The plant species effect was strongest on nirK-type denitrifiers, whereas water carbon content was a significant factor defining the structure of the nosZ-harboring community. The differences recognized using the three functional gene markers indicated that different drivers act on denitrifying populations capable of complete denitrification, compared to the overall denitrifier community. This finding may have implications for emissions of the greenhouse gas nitrous oxide.     

旅游开发对上海滨海湿地植被的影响

选择上海滨海地区湿地植被为研究对象,采用典型样地与标准样方相结合的调查方法,从属种和生物多样性角度分析不同旅游开发方式对滨海湿地植被的影响。结果如下:(1)根据滨海旅游区水域开放程度,可将开发类型分为封闭式、半封闭式以及开放式3种,不同旅游开发类型对滨海湿地植被影响程度不同;(2)研究区封闭式相比较半封闭式和开放式旅游开发类型,可以提高区域内物种数量,物种数量增加分别增多33和45种,但本地物种所占比例下降,从70%分别下降到26.26%和21.73%;(3)旅游开发封闭性越强,生物多样性越高,封闭式、半封闭式以及开放式旅游开发区域生物多样性Shanno-Winner指数分别为0.92、1.07和1.51,区域内均匀度指数随封闭性增加而有所降低,Shanno-Winner均匀度指数从最高0.71降到最低0.52;(4)滨海湿地植被对不同类型旅游开发响应不同,封闭度越高,区域内植被响应度越强,封闭式、半封闭式以及开放式植被响应指数分别为2.2、2.0和1.8。     

亚热带稻田弃耕湿地土壤因子对植物群落结构的影响

采用冗余分析法对弃耕一年稻田湿地生态系统的植物群落与土壤因子进行了分析.结果表明：在亚热带湿地生态系统中,土壤水分条件、有效钾、有效磷和pH是影响物种分布的最主要土壤因子.试验区的主要植物物种可以划分为3个物种组:丁香蓼-水竹叶物种组(组1)、牛鞭草-圆叶节节菜-稻槎菜物种组(组2)和小白酒草-辣蓼-双穗雀稗物种组(组3).其中,组1主要分布于土壤有效钾含量较高的区域;组2主要分布于阶段性淹水区域;组3主要分布于排水区域,且与土壤有效磷和pH呈正相关.物种多样性与土壤pH、植被地上生物量与土壤全钾含量呈显著正相关,均匀度与土壤有效氮含量呈显著负相关,与其他指标的相关性均不显著.     

Abundance and community structure of ammonia-oxidizing microorganisms in reservoir sediment and adjacent soils

Ammonia oxidation is an important process for global nitrogen cycling. Both ammonia-oxidizing bacteria (AOB) and archaea (AOA) can be the important players in nitrification process. However, their relative contribution to nitrification remains controversial. This study investigated the abundance and community structure of AOA and AOB in sediment of Miyun Reservoir and adjacent soils. Quantitative PCR assays indicated that the highest AOA abundance occurred in unplanted riparian soil, followed by reservoir sediment, reed-planted riparian soil and agricultural soil. The AOB community size in agricultural soil was much larger than that in the other habitats. Large variations in the structures of AOA and AOB were also observed among the different habitats. The abundance of Nitrosospira-like AOB species were detected in the agricultural soil and reservoir sediment. Pearson’s correlation analysis showed the AOB diversity had positive significant correlations with pH and total nitrogen, while the AOA diversity might be negatively affected by nitrate nitrogen and ammonia nitrogen. This work could add new insights towards nitrification in aquatic and terrestrial ecosystems.     

土地利用变化对土壤真菌群落结构的影响

应用PCR-RFLP和测序分析对川西亚高山米亚罗林区不同土地利用类型的土壤真菌18S rDNA基因进行了多样性和系统发育研究,探讨了土地利用变化对土壤真菌群落结构的影响。在20a龄云杉(Picea likiandensis var balfourianan)人工林和菜地两种类型土壤中,共得到238个阳性克隆,限制性内切酶MspI和RsaI进行RFLP分析后得到56个不同的分类操作单元(OTUs),其中20a龄云杉人工林样地获得137个阳性克隆和37个OTUs,而菜地样地获得101个阳性克隆和19个OTUs。在两类样地中具有不同的优势种群,其中20a龄云杉人工林样地有1个明显优势种群,占总克隆数的20.4%;菜地样地有2个明显优势种群,分别占总克隆数的25.7%和21.8%。对14个克隆进行了序列测定,序列的相似性在86%~99%之间,与GenBank数据库中的序列进行比对,与已知序列的相似性在92%~100%之间。系统发育分析表明,所有的18SrDNA基因被分为3个主要的簇,其中20a龄云杉人工林样地的克隆都聚集在第一和第三簇中,而菜地样地的克隆都聚集在第二簇中。结果说明,两类土壤中具有较为丰富的真菌多样性,而土地利用变化引起了土壤真菌群落结构的明显变化。     

Functional diversity and community structure of microorganisms in rhizosphere and non-rhizosphere Canadian arctic soils

Functional diversities of microorganisms in arctic soil samples at three incubation temperatures were assessed using sole-carbon-source-utilization (SCSU). Soil samples from four sites were collected from the rhizosphere and non-rhizosphere soils. Microorganisms were extracted from samples and inoculated into ECO-Biolog plates and incubated at 4, 10 and 28 °C. Calculations of Shannon–Weaver diversity and Shannon–Weaver evenness were based on the substrate utilization in the Biolog plates. Shannon–Weaver diversities (H) in rhizosphere samples were significantly greater ( _H = 3.023 ± 0.197; P < 0.005) than in non-rhizosphere samples ( _H = 2.770 ± 0.154). Similarly, the evenness (E) of the inoculated microbial cells exhibited significant differences (P < 0.005) between the rhizosphere and non-rhizosphere soil samples ( _E = 0.880 ± 0.057 for soils with rhizosphere; _E = 0.807 ± 0.044 for non-rhizosphere samples). Higher microbial diversity and evenness were observed in samples incubated at 4 °C than at 28 °C [least significant difference (lsd) = 0.29], and evenness indices were higher in rhizosphere samples than in non-rhizosphere soils incubated at all three temperatures (lsd = 0.02). Principal component analysis (PCA) of the multivariate data set differentiated the soil samples on the relatively gross scale of microbial communities isolated from rhizosphere and non-rhizosphere soils at all three temperatures.     

The impact of red mud on growth of wetland vegetation and substrate fertility

Greenhouse experiments were conducted to evaluate the impact of red mud, the residue of the Bayer process for extracting alumina from bauxite, on wetland to investigate whether red mud can be used for wetland restoration. Two wetland species,Spartina alterniflora Loisel. andSagittaria lancifolia L., were used to test their response to the following substrate treatments: 100% marsh sediment, 100% red mud, a mixture of 50% marsh sediment and 50% red mud, a mixture of 50% red mud and 50% compost, and neutralized red mud. Each substrate treatment received two fertilization levels, fertilized (N–P–K) and unfertilized. Red mud could support the growth of the salt marsh species,Spartina alterniflora, but not the fresh marsh species.Sagittaria lancifolia. The high Na content and salinity of red mud, even when mixed with marsh sediment or compost, appeared to be the primary cause for the high mortality ofSagittaria in these substrates. Fertilization did not reduce the stress response ofSagittaria to red mud, but significantly increased the growth ofSpartina. Red mud is low in available N and P and required fertilizer or organic matter (e.g., compost) addition to increase fertility. In experiments with both fresh and salt marsh sediments, the concentrations of soluble heavy metals, with the exception of Mn, were not significantly greater for red mud than for marsh sediment. Thus, the release of heavy metals from red mud over the short-term may not pose an environmental concern. However, the mobilization of heavy metals over the long-term and the influence of plants in accumulating metals requires further investigation.     

Effects of riparian vegetation width and substrate type on riffle beetle community structure

Riffle beetle community structure is influenced by the preservation condition of stream riparian vegetation. Though, the width of riparian vegetation required to ensure conservation of stream insect communities is still controversial. Effects of alterations in riparian vegetation widths on stream insect community structure can be overcame by other environmental variables, like substrate type, hindering accurate assessments. We tested the effects of different riparian vegetation widths (>40, 30–15, 15–5 and <5 m) along with different substrate types (inorganic and organic) on riffle beetle community structure in southern Brazilian 4th‐ to 5th‐order streams. Riparian buffer widths and substrate types influenced riffle beetle community structure, but no interaction between them was observed. Reduced riparian vegetation widths downstream were associated with changes in riffle beetle dominant genera (Macrelmis predominated only in streams with narrowest riparian widths). Additionally, communities in organic substrates had lower equitability and different dominant genera (Hexacylloepus and Heterelmis) than inorganic ones. Our results showed that reductions in riparian vegetation were associated with water pollution and changes in riffle beetle community structure, suggesting that buffer strips narrower than 5 m are not adequate to maintain environmental integrity of southern Brazilian streams. These results have special importance for the conservation of stream insects in Brazil, as reductions up to less than 5 m in stream banks of small properties are allowed by the new Brazilian Forest Code, independently of stream order.     

Functional diversity and community structure of microorganisms in uncontaminated and creosote-contaminated soils as determined by sole-carbon-source-utilization

Functional diversities of microorganisms from uncontaminated and creosote-contaminated soils were assessed using sole-carbon source-utilization patterns. The microorganisms were extracted from soil samples and inoculated into Gram-negative Biolog plates incubated at 23°C. Measurement of Shannon diversity, richness, and evenness indices, principal component analysis (PCA), and colour development rank (CDR) plots were based upon substrate utilization. Calculations incorporated data from both the 95 regular Gram-negative Biolog microplate wells and a selection of 23 carbon substrates that are included on Biolog Ecoplates. There did not appear to be significant differences in Shannon diversity and richness indices, PCA, or CDR plots between aminated and creosote-contaminated soils. Significant differences in Shannon diversity and evenness indices that were apparent with the use of the 23 ecologically relevant microplate wells were mostly absent based on calculations that incorporated the regular 95 Gram-negative Biolog microplate wells. Resolution of microbial communities by PCA, however, appeared to be reduced by the use of the 23 Biolog microplate wells compared to the regular 95 carbon sources.     

不同有机肥对土壤镉锌生物有效性的影响

在南方典型稻田设置连续4年施用猪粪、鸡粪、稻草的定位试验,监测施用不同有机肥条件下土壤及水稻植株镉(Cd)、锌(Zn)含量的变化,研究有机肥对土壤Cd、Zn活性及其交互作用的影响.结果表明: 施用有机肥(猪粪、鸡粪、稻草)对土壤全Cd、有效态Cd含量及Cd活性皆无显著影响,但有增加土壤Cd全量的趋势,且显著增加土壤全Zn、有效态Zn含量及Zn活性.施用猪粪、鸡粪、稻草皆可降低稻米Cd含量,降Cd效果为猪粪>鸡粪>稻草,猪粪处理水稻稻米、茎、叶Cd含量分别比对照下降37.5%、44.0%、36.4%;鸡粪处理水稻米、茎、叶Cd含量分别比对照下降22.5%、33.8%、22.7%;而稻草处理水稻米Cd含量比对照下降7.5%,但茎、叶Cd含量比对照分别增加8.2%、22.7%;施用猪粪、鸡粪降低稻米Cd含量主要是降低了水稻植株对土壤Cd的富集,而施用稻草则主要是降低了水稻茎Cd向稻米的转运.施用有机肥还增加了水稻茎Zn含量,施用猪粪、鸡粪、稻草的水稻茎Zn含量比单施化肥分别增加53.4%、41.2%、13.9%,但对水稻稻米、叶Zn含量无显著影响.Zn、Cd在土壤、植株茎中皆表现出显著的拮抗作用,土壤及水稻茎Zn含量的增加显著抑制了水稻米、茎、叶对Cd的吸收积累,且随土壤有效态Zn/Cd含量比值的增加,Zn、Cd竞争土壤吸附不是抑制水稻吸收积累Cd的主控因子,而Zn、Cd竞争吸收才是影响水稻吸收积累Cd的主控因子.     

水文情势与盐分变化对湿地植被的影响研究综述

湿地植被是湿地生态系统的重要组成部分。水文情势与盐分变化直接影响到湿地植被的分布与演替。目前,全球气候变化和人类活动导致的水文情势改变与盐分聚集已造成大面积的湿地退化和盐渍化,已严重威胁全球淡水湿地生态系统的稳定和健康。系统总结了水文情势与盐分变化单一环境变量及其交互作用对湿地植物生理生态、物种多样性、群落结构与演替和植被动态等诸多方面的影响研究进展,并探讨了湿地水文动态-盐分变化-植被响应的综合模型研究现状,认为发展湿地综合模型预测未来水文情势与盐分变化情景下湿地演变,是应对气候变化湿地水盐管理和生态保护的重要工具,最后指出今后亟需加强的研究方向。     

机场草坪植被调控对土壤细菌群落结构与功能的影响

为了探究植被调控对土壤细菌群落结构和功能的影响,对天津滨海国际机场草地植被进行单一草坪植物建植和高强度刈割,在调控后第3年的春、夏、秋季节取调控区土壤样本,利用16S rRNA基因高通量测序和PICRUSt软件,分析了不同植被调控方式下土壤细菌组成、多样性及季节性变化,预测细菌功能特征。结果表明,各样地共有的优势菌门（相对丰度>5%）有变形菌门（Proteobacteria）、放线菌门（Actinobacteria）、酸杆菌门（Acidobacteria）、芽单胞菌门（Gemmatimonadetes）和绿弯菌门（Chloroflexi）。与对照区相比,刈割调控区土壤放线菌门相对丰度显著增加;单一草坪建植调控区,夏季土壤芽单胞菌门相对丰度显著增加（P<0.05）。刈割调控、高羊茅及黑麦草调控区,土壤细菌门之间相关性较对照分别减弱21.4%、46.4%和67.9%,使细菌网络结构更为简单。夏季和秋季3个调控区土壤细菌群落的Shannon指数和Chao1指数显著高于对照区,而秋季Simpson指数显著低于对照区（P<0.05）。KEGG代谢途径差异分析可知,刈割调控、高羊茅和黑麦草调控区,土壤细菌分别有25、24和23个代谢通路的功能基因丰度显著低于对照区,主要体现在聚糖的生物合成与代谢、细胞运动、细胞生长与死亡、核苷酸代谢等通路上。可见,机场植被调控改变了土壤细菌群落的组成,简化了细菌网络结构,代谢功能也明显下降。     

扎龙湿地硅藻植物群落季节变化及其对环境的响应

扎龙湿地位于黑龙江省西部、松嫩平原乌裕尔河下游,是我国北方同纬度地区最完整的湿地。于2012年春、夏、秋3季,对扎龙湿地6个代表性区域进行硅藻标本采集,经观察鉴定,发现硅藻植物140个分类单位,包括121种19变种,隶属于2纲6目9科30属。羽纹纲物种较丰富,占总种类数的95%。硅藻植物群落呈现明显的季节演替,秋季硅藻种类丰富度及相对丰度明显高于春、夏两季,优势种多以淡水、半咸水、喜弱碱的种类为主,优势种与水体的盐度和酸碱度存在一定的响应关系。应用典范对应分析(Canonical Correspondence Analysis,CCA)探讨硅藻植物群落变化与环境因子之间的关系。CCA结果显示在扎龙湿地中,水温、电导率、pH、溶解氧是影响硅藻群落结构变化的主要因素,此外总氮、总磷也是硅藻群落季节演替的重要驱动因子。结合硅藻植物多样性指数和硅藻商对扎龙湿地水质进行综合评价,结果显示扎龙湿地整体为中-寡污带水体,部分水域水质较清洁,少数样点受人为因素影响,呈轻污染。     

Short-term plant species impact on microbial community structure in soils with long-term agricultural history

The goal of our study was to capture the short-term effects of individual plant species on an established microbial community in a soil with a well-defined agricultural history. Using biochemical and molecular techniques we quantified the effects of plant species on changes in the soil microbial community over an 8-week time-course. We conducted a greenhouse experiment using field soil from a site that was managed as a Zea mays monoculture for over 50 years. The conditioned soil provided a baseline from which changes in microbial community composition through the effects of newly introduced plants could be determined. Within a short time frame (8 weeks), introduced plants influenced the soil microbial community in ways unique to each plant. Some species (Fagopyrm esculentum and xTriticosecale spp.) resulted in an increase of total microbial community richness, diversity and the stimulation of new microbial species not associated with the legacy vegetation. Other plants (Vicia villosa and Lolium multiflorum) tended to reduce community diversity. We suggest root surface area is good general predictor of rhizosphere microbial community diversity, but in some cases other plant traits may have dominant influence on plant-induced changes in microbial community composition.     

Freeze-coring method for characterization of microbial community structure and function in wetland soils at high spatial resolution

A simple freeze-coring method was developed to obtain structurally intact cores from wetland soils. A copper tube was inserted into the wetland and filled with ethanol and dry ice to freeze the surrounding soil. Biological structure and function could be analyzed, and labile compounds such as mRNA were recovered.     

Temperature sensitivity of greenhouse gas production in wetland soils of different vegetation

Organic matter decomposition regulates rates of carbon loss (CO₂ and CH₄) in wetlands and has implications for carbon sequestration in the context of changing global temperature. Here we determined the influence of temperature and vegetation type on both aerobic and anaerobic decomposition of organic matter in subtropical wetland soils. As in many other studies, increased temperature resulted in higher rates of respiration and methanogenesis under both aerobic and anaerobic conditions, and the positive effect of temperature depended on vegetation (source of carbon substrate to soil). Under anaerobic incubations, the proportion of gaseous C (CO₂ and CH₄) lost as CH₄ increased with temperature indicating a greater sensitivity of methanogenesis to temperature. This was further supported by a wider range of Q₁₀ values (1.4–3.6) for methane production as compared with anaerobic CO₂ (1.3–2.5) or aerobic CO₂ (1.4–2.1) production. The increasing strength of positive linear correlation between CO₂:CH₄ ratio and the soil organic matter ligno-cellulose index at higher temperature indicated that the temperature sensitivity of methanogenesis was likely the result of increased C availability at higher temperature. This information adds to our basic understanding of decomposition in warmer subtropical and tropical wetland systems and has implications for C models in wetlands with different vegetation types.     

Links between archaeal community structure, vegetation type and methanogenic pathway in Alaskan peatlands

Although northern peatlands contribute significantly to natural methane emissions, recent studies of the importance and type of methanogenesis in these systems have provided conflicting results. Mechanisms controlling methanogenesis in northern peatlands remain poorly understood, despite the importance of methane as a greenhouse gas. We used 16S rRNA gene retrieval and denaturing gradient gel electrophoresis (DGGE) to analyse archaeal communities in 15 high-latitude peatland sites in Alaska and three mid-latitude peatland sites in Massachusetts. Archaeal community composition was analysed in the context of environmental, vegetation and biogeochemical factors characterized in a parallel study. Phylogenetic analysis revealed that Alaskan sites were dominated by a cluster of uncultivated crenarchaeotes and members of the families Methanomicrobiaceae and Methanobacteriaceae, which are not acetoclastic. Members of the acetoclastic family Methanosarcinaceae were not detected, whereas those of the family Methanosaetaceae were either not detected or were minor. These results are consistent with biogeochemical evidence that acetoclastic methanogenesis is not a predominant terminal decomposition pathway in most of the sites analysed. Ordination analyses indicated a link between vegetation type and archaeal community composition, suggesting that plants (and/or the environmental conditions that control their distribution) influence both archaeal community activity and dynamics.     

Persistence and impact on microorganisms of Bacillus thuringiensis proteins in some Zimbabwean soils

The persistence of the Bacillus thuringiensis subsp. kurstaki (Btk) toxin (Cry1Ab protein) from Bt maize (MON810, Yieldgard®) residues incorporated in a vertisol (739 g clay kg^?1) was investigated. The maize residues were incubated in the soil for 4 weeks, and activity of the toxin in the residues was bioassayed using larvae of the diamondback moth, Plutella xylostella (Lepidoptera: Yponomeutidae). Corrected mortality of P. xylostella in the bioassays decreased from 76% to 30% in less than a week of incubation in the soil. In addition to the above observations, the effects of Btk, Bt subsp. israelensis (Bti), and Bt subsp. tenebrionis (Btt) proteins on the soil microbiota were examined using a vertisol, an alfisol, and an oxisol. The pre-incubated soils (7 days after moisture adjustment) were treated with crystal proteins of Btk, Bti, and Btt and incubated for further a 7-day period. Microbial biomass carbon (MBC) and counts of culturable bacteria and fungi were determined. The proteins did not show effects on MBC or bacterial and fungal counts, possibly as a result of adsorption of the proteins on soil particles, which could have rendered the proteins inaccessible for microbial utilization. Microbial biomass carbon and counts arranged in decreasing order were vertisol>oxisol>alfisol, similar to the amounts of organic C and clay in the soils. However, bacteria and fungi counts were higher in the vertisol than in the alfisol and the oxisol soils. Our observations suggest that larvicidal proteins produced by different subspecies of Bt and Bt maize could persist in tropical soils as a result of adsorption on soil clays but that there were no observable effect on the soil microbiota.     

北京市延庆采砂迹地型湿地植被群落分类与演替分析

采用TWISPAN分析方法,对北京市延庆采矿迹地湿地40个样地51种植物进行了分类排序,将群落类型划分为7个类型,即茵陈蒿-狗尾草-黄花蒿群落、野艾蒿-茵陈蒿-尖叶胡枝子-狗尾草群落、野艾蒿-茵陈蒿-狗尾草-野大豆-苣荬菜群落、狗尾草-苍耳-黄香草木犀-虎尾草群落、狼拔草-野艾蒿-旋覆花-大籽蒿-芦苇群落、香蒲-芦苇-茭白-野大豆-鬼针草群落和竹节灯心草-褐穗莎草-稗群落;同时运用双变量主坐标分析(DPCoA)对51种植物进行了排序分析,研究结果显示研究区存在两种演替规律,即由喜湿旱生耐淹水植物演替为喜旱旱生植物和由湿地挺水植物向湿生植物演替两种类型.对于采砂基地型湿地植被恢复不仅恢复土壤营养条件,调控湿地水分条件也是十分关键的.研究结论将为采砂迹地型湿地恢复提供科学支持.