Immobilized microbes and a high-rate, continuous waste processor for the production of high Btu gas and the reduction of pollutants

Microbes capable of degrading organic wastes (sewage) are densely packed (immobilized) within the pores of controlled-pore ceramics. When the ceramic displays the optimum pore range for the reproduction of these microbes, the minimum volume for a very efficient reactor is required. A two-stage, anaerobic, immobilized microbe reactor has been designed, and laboratoryscale units have been constructed. A few of these units have been operated continuously for two years. These reactors were designed for the efficent conversion of carbon to methane in biodegradable molecules and for the effective transfer of that gas. The reactors were operated at 20, 30, and 40 degrees C at residence times of 2-5.5 h. The total chemical oxygen demand (COD) of the sewage varied from 800-2600 mg/L. The resulting gas contained greater than 90% methane and less than 5% CO(2). Approximately 32-54% of the influent total carbon was recovered as methane. The reduction in COD varied from 63 to 89%.     

Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update

Anaerobic digestion technology is the biological treatment of organic waste and wastewater without input of external electron acceptors (oxygen), offering the potential to reduce treatment cost and to produce energy as 'biogas' (methane) from organic waste. The technology has become enormously popular in the past two decades, and knowledge of microbiological aspects of the technology has also accumulated significantly. Major advances have been made in elucidating the diversity of yet-to-be cultured microbes in anaerobic digestion processes, and the cultivation of uncultured organisms is of great interest with regard to gaining insights into the function of these organisms. In addition, recent advances have been made in the development of microbial fuel cells as an alternative, direct energy-yielding treatment system.     

Field Observations of Methane Concentrations and Oxidation Rates in the Southeastern Bering Sea

Measurements of methane oxidation rates were made in southeastern Bering Sea water samples with [¹⁴C]methane. The rate at which ¹⁴CO₂ evolved from samples exposed to one methane concentration was defined as the relative methane oxidation rate. Rate determinations at three methane concentrations were used to estimate methane oxidation kinetics. The rate constant calculated from the kinetics and the observed methane concentration in the same water sample were used to calculate an in situ methane oxidation rate and the turnover time. First-order kinetics were observed in essentially all experiments in which methane oxidation kinetics were measured. Relative methane oxidation rates were greater in waters collected at inshore stations than at the offshore stations and were greater in bottom samples than in surface samples. In most water samples analyzed, there was essentially no radioactivity associated with the cells. The resulting respiration percentages were therefore very high with a mean of >98%. These data suggest that most of the methane was used by the microflora as an energy source and that very little of it was used in biosynthesis. The relative methane oxidation rates were not closely correlated with methane concentrations and did not appear to be linked to either oxygen or dissolved inorganic nitrogen concentrations. However, there was a significant correlation with relative microbial activity. Our data suggest that the methane oxidizers were associated with the general microbial heterotrophic community. Since these organisms did not appear to be using methane as a carbon source, it is unlikely that they have been isolated and identified as methane oxidizers in the past.     

Molecular simulation of methane adsorption and its effect on kaolinite swelling as functions of pressure and temperature

Molecular simulation was used to study methane adsorption and its effect on kaolinite swelling. The effects of temperature and pressure were also analysed. The comparisons which validate the force field and model in our paper were made between simulation and experiment. Simulation results demonstrate that adsorption behaviour of methane exhibit Langmuir adsorption behaviour. The temperature has a negative effect on gas adsorption, the adsorption amounts will decrease with increasing temperature at a given pressure. A quantitative relationship between the methane adsorption and the kaolinite swelling was provided. The kaolinite–methane interaction dominates and the methane–methane interaction contributes less than 20% to the total interaction energy. The first peak in the RDFs increases with the increasing pressure, illustrating that the system becomes less structured at higher pressure. Compared with the higher temperature, the first peaks at lower temperature increase as a higher amount of methane adsorbed indicating that the interaction between the kaolinite and methane increase with decreasing temperature. Methane is strongly adsorbed on the sites of the hydrogen and oxygen atoms in kaolinite molecules.     

The influence of hydrogeological disturbance and mining on coal seam microbial communities

The microbial communities present in two underground coal mines in the Bowen Basin, Queensland, Australia, were investigated to deduce the effect of pumping and mining on subsurface methanogens and methanotrophs. The micro‐organisms in pumped water from the actively mined areas, as well as, pre‐ and post‐mining formation waters were analyzed using 16S rRNA gene amplicon sequencing. The methane stable isotope composition of Bowen Basin coal seam indicates that methanogenesis has occurred in the geological past. More recently at the mine site, changing groundwater flow dynamics and the introduction of oxygen in the subsurface has increased microbial biomass and diversity. Consistent with microbial communities found in other coal seam environments, pumped coal mine waters from the subsurface were dominated by bacteria belonging to the genera Pseudomonas and the family Rhodocyclaceae. These environments and bacterial communities supported a methanogen population, including Methanobacteriaceae, Methanococcaceae and Methanosaeta. However, one of the most ubiquitous micro‐organisms in anoxic coal mine waters belonged to the family ‘Candidatus Methanoperedenaceae’. As the Archaeal family ‘Candidatus Methanoperedenaceae’ has not been extensively defined, the one studied species in the family is capable of anaerobic methane oxidation coupled to nitrate reduction. This introduces the possibility that a methane cycle between archaeal methanogenesis and methanotrophy may exist in the anoxic waters of the coal seam after hydrogeological disturbance.     

Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review

Evidence supporting a key role for anaerobic methane oxidation in the global methane cycle is reviewed. Emphasis is on recent microbiological advances. The driving force for research on this process continues to be the fact that microbial communities intercept and consume methane from anoxic environments, methane that would otherwise enter the atmosphere. Anaerobic methane oxidation is biogeochemically important because methane is a potent greenhouse gas in the atmosphere and is abundant in anoxic environments. Geochemical evidence for this process has been observed in numerous marine sediments along the continental margins, in methane seeps and vents, around methane hydrate deposits, and in anoxic waters. The anaerobic oxidation of methane is performed by at least two phylogenetically distinct groups of archaea, the ANME-1 and ANME-2. These archaea are frequently observed as consortia with sulfate-reducing bacteria, and the metabolism of these consortia presumably involves a syntrophic association based on interspecies electron transfer. The archaeal member of a consortium apparently oxidizes methane and shuttles reduced compounds to the sulfate-reducing bacteria. Despite recent advances in understanding anaerobic methane oxidation, uncertainties still remain regarding the nature and necessity of the syntrophic association, the biochemical pathway of methane oxidation, and the interaction of the process with the local chemical and physical environment. This review will consider the microbial ecology and biogeochemistry of anaerobic methane oxidation with a special emphasis on the interactions between the responsible organisms and their environment. This revised version was published online in August 2006 with corrections to the Cover Date.     

Singlet oxygen and photo-oxidative stress management in plants and algae

Photosynthetic organisms constantly face the threat of photo-oxidative stress from fluctuating light conditions and environmental stress. Plants and algae have developed an array of defences to protect the chloroplast from reactive oxygen species. Genetic and physiological studies have shown that antioxidant responses are important to high-light acclimation, both by directly scavenging or quenching reactive oxygen intermediates and by contributing reducing power for alternative electron transport pathways and excess energy dissipation. At present, the signalling events leading to up-regulation of antioxidant defences in high light remain a mystery. Recent advances toward understanding acclimation to oxidative stress in both photosynthetic and non-photosynthetic model organisms may illuminate how plants and algae respond to high-light stress. Although the role of hydrogen peroxide in high-light acclimation has been investigated, less is known about responses to singlet oxygen, a form of reactive oxygen that poses a significant threat specifically to photosynthetic organisms. This review will discuss some intriguing new findings in that area, focusing on recent findings regarding the nature of singlet-oxygen responses in the chloroplast.     

Methanogenesis, fires and the regulation of atmospheric oxygen

The Gaia hypothesis states that the composition, oxidation-reduction potential and the temperature of the Earth's lower atmosphere are modulated by and for the biota living on the surface (Lovelock, 1972; Margulis and Lovelock, 1974). A corollary is that atmospheric oxygen is presently regulated at about 21% for the dominant life forms today: vascular plants and metazoa. We suggest that the enormous annual production of methane (of the order of 10¹⁴ mol) is directly related to the short term modulation of oxygen concentration. Atmospheric oxygen results from the burial of reduced carbon; methanogenesis and subsequent atmospheric oxidation of methane prevents that burial. We also present experimental work on the probability of ignition of vegetation as a function of increasing oxygen concentration (Watson, 1978). Both the experiments and consideration of the fossil record lead us to conclude that oxygen has been regulated by methane (and perhaps by N₂O and others) at about 10–25% for very long periods relative to the atmospheric residence times of these reactive gases.     

Zero methane emission bogs: extreme rhizosphere oxygenation by cushion plants in Patagonia

? Vascular wetland plants may substantially increase methane emissions by producing root exudates and easily degradable litter, and by providing a low-resistance diffusion pathway via their aerenchyma. However, model studies have indicated that vascular plants can reduce methane emission when soil oxygen demand is exceeded by oxygen released from roots. Here, we tested whether these conditions occur in bogs dominated by cushion plants. ? Root-methane interactions were studied by comparing methane emissions, stock and oxygen availability in depth profiles below lawns of either cushion plants or Sphagnum mosses in Patagonia. ? Cushion plants, Astelia pumila and Donatia fascicularis, formed extensive root systems up to 120 cm in depth. The cold soil (< 10°C) and highly decomposed peat resulted in low microbial activity and oxygen consumption. In cushion plant lawns, high soil oxygen coincided with high root densities, but methane emissions were absent. In Sphagnum lawns, methane emissions were substantial. High methane concentrations were only found in soils without cushion plant roots. ? This first methane study in Patagonian bog vegetation reveals lower emissions than expected. We conclude that cushion plants are capable of reducing methane emission on an ecosystem scale by thorough soil and methane oxidation.     

Biogas (natural gas?) production by anaerobic digestion of oil cake by a mixed culture isolated from cow dung

Starting with cow dung, a mixed culture capable of producing biogas by the anaerobic digestion of castor cake (oil expelled) has been isolated and stabilized. The biogas so produced contains small quantities of ethane, propane and butane in addition to methane and carbon dioxide which are the major constituents. This suggests that the mixed culture contains organisms hitherto unisolated and unidentified which are capable of synthesizing these hydrocarbons through the mediation of the alkyl derivatives of coenzyme M.     

Effect of CO2 enrichment and elevated temperature on methane emissions from rice, Oryza sativa

Methane emissions from rice grown within Temperature Gradient Greenhouse Tunnels under doubled CO₂ concentrations were 10–45 times less than emissions from control plants grown under ambient CO₂. For two cultivars of rice (cvs. Lemont and IR-72), methane emissions increased with a temperature increase of 2°, from outdoor ambient temperatures to the first cell of the ambient CO₂ tunnel (ambient temperature + 2 °C). Within both tunnels and for both cultivars methane emissions decreased with further temperature increases (from 2° to 5 °C above ambient). Carbon dioxide enrichment stimulated both above- and below-ground production. Our original hypothesis was that increased CO₂ would stimulate plant productivity and therefore stimulate methane emission, since direct linkages between these parameters have been observed. We hypothesize that CO₂ enrichment led to the attenuation of methane production due to increased delivery of oxygen to the rhizosphere because of increased root biomass and porosity. The increased root biomass due to elevated CO₂ may have more effectively aerated the soil, suppressing methane production. However, this study may be unique because the low organic content (< 1%) of the sandy soils in which the rice was grown created very little oxygen demand.     

The Leeuwenhoek Lecture 2000 the natural and unnatural history of methane-oxidizing bacteria

Methane gas is produced from many natural and anthropogenic sources. As such, methane gas plays a significant role in the Earth's climate, being 25 times more effective as a greenhouse gas than carbon dioxide. As with nearly all other naturally produced organic molecules on Earth, there are also micro-organisms capable of using methane as their sole source of carbon and energy. The microbes responsible (methanotrophs) are ubiquitous and, for the most part, aerobic. Although anaerobic methanotrophs are believed to exist, so far, none have been isolated in pure culture. Methanotrophs have been known to exist for over 100 years; however, it is only in the last 30 years that we have begun to understand their physiology and biochemistry. Their unique ability to use methane for growth is attributed to the presence of a multicomponent enzyme system-methane monooxygenase (MMO)-which has two distinct forms: soluble (sMMO) and membrane-associated (pMMO); however, both convert methane into the readily assimilable product, methanol. Our understanding of how bacteria are capable of effecting one of the most difficult reactions in chemistry-namely, the controlled oxidation of methane to methanol-has been made possible by the isolation, in pure form, of the enzyme components.The mechanism by which methane is activated by sMMO involves abstraction of a hydrogen atom from methane by a high-valence iron species (FeIV or possibly FeV) in the hydroxylase component of the MMO complex to form a methyl radical. The radical combines with a captive oxygen atom from dioxygen to form the reaction product, methanol, which is further metabolized by the cell to produce multicarbon intermediates. Regulation of the sMMO system relies on the remarkable properties of an effector protein, protein B. This protein is capable of facilitating component interactions in the presence of substrate, modifying the redox potential of the diiron species at the active site. These interactions permit access of substrates to the hydroxylase, coupling electron transfer by the reductase with substrate oxidation and affecting the rate and regioselectivity of the overall reaction. The membrane-associated form is less well researched than the soluble enzyme, but is known to contain copper at the active site and probably iron.From an applied perspective, methanotrophs have enjoyed variable successes. Whole cells have been used as a source of single-cell protein (SCP) since the 1970s, and although most plants have been mothballed, there is still one currently in production. Our earlier observations that sMMO was capable of inserting an oxygen atom from dioxygen into a wide variety of hydrocarbon (and some non-hydrocarbon) substrates has been exploited to either produce value added products (e.g. epoxypropane from propene), or in the bioremediation of pollutants such as chlorinated hydrocarbons. Because we have shown that it is now possible to drive the reaction using electricity instead of expensive chemicals, there is promise that the system could be exploited as a sensor for any of the substrates of the enzyme.     

Architecture and active site of particulate methane monooxygenase

Particulate methane monooxygenase (pMMO) is an integral membrane metalloenzyme that oxidizes methane to methanol in methanotrophic bacteria, organisms that live on methane gas as their sole carbon source. Understanding pMMO function has important implications for bioremediation applications and for the development of new, environmentally friendly catalysts for the direct conversion of methane to methanol. Crystal structures of pMMOs from three different methanotrophs reveal a trimeric architecture, consisting of three copies each of the pmoB, pmoA, and pmoC subunits. There are three distinct metal centers in each protomer of the trimer, mononuclear and dinuclear copper sites in the periplasmic regions of pmoB and a mononuclear site within the membrane that can be occupied by copper or zinc. Various models for the pMMO active site have been proposed within these structural constraints, including dicopper, tricopper, and diiron centers. Biochemical and spectroscopic data on pMMO and recombinant soluble fragments, denoted spmoB proteins, indicate that the active site involves copper and is located at the site of the dicopper center in the pmoB subunit. Initial spectroscopic evidence for O₂ binding at this site has been obtained. Despite these findings, questions remain about the active site identity and nuclearity and will be the focus of future studies.     

Anaerobic Methane Oxidation: Occurrence and Ecology

Anoxic sediments and digested sewage sludge anaerobically oxidized methane to carbon dioxide while producing methane. This strictly anaerobic process showed a temperature optimum between 25 and 37°C, indicating an active microbial participation in this reaction. Methane oxidation in these anaerobic habitats was inhibited by oxygen. The rate of the oxidation followed the rate of methane production. The observed anoxic methane oxidation in Lake Mendota and digested sewage sludge was more sensitive to 2-bromoethanesulfonic acid than the simultaneous methane formation. Sulfate diminished methane formation as well as methane oxidation. However, in the presence of iron and sulfate the ratio of methane oxidized to methane formed increased markedly. Manganese dioxide and higher partial pressures of methane also stimulated the oxidation. The rate of methane oxidation in untreated samples was approximately 2% of the CH₄ production rate in Lake Mendota sediments and 8% of that in digested sludge. This percentage could be increased up to 90% in sludge in the presence of 10 mM ferrous sulfate and at a partial pressure of methane of 20 atm (2,027 kPa).     

Genetics and molecular biology of methanotrophs

Abstract Over the last 20 years or so, the obligate methane-oxidizing bacteria (methanotrophs) have attracted considerable interest. As they grow on a relatively cheap and abundant carbon source, they appeared ideal organisms for the production of bulk chemicals, single-cell protein and for use in biotransformations. More recently their cooxidation properties have been investigated for bioremediation, including the removal of chlorinated compounds such as trichloroethylene from polluted groundwaters. These studies have resulted in a great deal of information on the physiology and biochemistry of methanotrophs but sadly the molecular biology and genetic studies of these organisms have lagged behind. This has been in part due to the obligate nature of the methanotrophs and the refractory nature of such organisms to conventional genetic analysis. However, the more recent availability of broad-host range plasmids coupled with improvements in molecular biology methods have allowed the development of molecular genetic techniques for methanotrophs. The purpose of this review is to summarize what is known about the genetics and molecular biology of methanotrophs and how this information can be used to complement previous and current biochemical studies on the unique property of these bacteria, i.e. the ability to oxidize methane to methanol. Recent developments in molecular ecology techniques that may be applied to these apparently ubiquitous organism are also considered.     

Genetics and molecular biology of methanotrophs.

Over the last 20 years or so, the obligate methane-oxidizing bacteria (methanotrophs) have attracted considerable interest. As they grow on a relatively cheap and abundant carbon source, they appeared ideal organisms for the production of bulk chemicals, single-cell protein and for use in biotransformations. More recently their cooxidation properties have been investigated for bioremediation, including the removal of chlorinated compounds such as trichloroethylene from polluted groundwaters. These studies have resulted in a great deal of information on the physiology and biochemistry of methanotrophs but sadly the molecular biology and genetic studies of these organisms have lagged behind. This has been in part due to the obligate nature of the methanotrophs and the refractory nature of such organisms to conventional genetic analysis. However, the more recent availability of broad-host range plasmids coupled with improvements in molecular biology methods have allowed the development of molecular genetic techniques for methanotrophs. The purpose of this review is to summarize what is known about the genetics and molecular biology of methanotrophs and how this information can be used to complement previous and current biochemical studies on the unique property of these bacteria, i.e. the ability to oxidize methane to methanol. Recent developments in molecular ecology techniques that may be applied to these apparently ubiquitous organism are also considered.     

Effect of microaerobic conditions on the degradation kinetics of cellulose

Limited oxygen supply to sludge digesters has shown to be an effective method to eliminate hydrogen sulfide from the biogas produced during anaerobic digestion but uneven results have been found in terms of the effect on the degradation of complex organic matter. In this study, the effect that the limited oxygen supply provoked on the “anaerobic” degradation of cellulose was evaluated in batch-tests. The microaerobic assays showed to reach a similar maximum production of methane than the anaerobic ones after 19 d and a similar hydrolytic activity (considering a first order rate constant); however, the microaerobic assays presented a shorter lag-phase time than the anaerobic test resulting in faster production of methane during the first steps of the degradation; specifically, the maximum methane production found in the anaerobic test in 19 d was found in the microaerobic test before the day 15.     

Methane oxidation and the competition for oxygen in the rice rhizosphere

A mechanistic approach is presented to describe oxidation of the greenhouse gas methane in the rice rhizosphere of flooded paddies by obligate methanotrophic bacteria. In flooded rice paddies these methanotrophs compete for available O(2) with other types of bacteria. Soil incubation studies and most-probable-number (MPN) counts of oxygen consumers show that microbial oxygen consumption rates were dominated by heterotrophic and methanotrophic respiration. MPN counts of methanotrophs showed large spatial and temporal variability. The most abundant methanotrophs (a Methylocystis sp.) and heterotrophs (a Pseudomonas sp. and a Rhodococcus sp.) were isolated and characterized. Growth dynamics of these bacteria under carbon and oxygen limitations are presented. Theoretical calculations based on measured growth dynamics show that methanotrophs were only able to outcompete heterotrophs at low oxygen concentrations (frequently < 5 microM). The oxygen concentration at which methanotrophs won the competition from heterotrophs did not depend on methane concentration, but it was highly affected by organic carbon concentrations in the paddy soil. Methane oxidation was severely inhibited at high acetate concentrations. This is in accordance with competition experiments between Pseudomonas spp. and Methylocystis spp. carried out at different oxygen and carbon concentrations. Likely, methane oxidation mainly occurs at microaerophilic and low-acetate conditions and thus not directly at the root surface. Acetate and oxygen concentrations in the rice rhizosphere are in the critical range for methane oxidation, and a high variability in methane oxidation rates is thus expected.     

Methane oxidation in sediments of a floodplain wetland in south-eastern Australia

Potential rates of in vitro methane oxidation in sediments from a floodplain wetland in south-eastern Australia ranged between 0·05 and 0·45 μmol cm⁻³ h⁻¹. These rates were at least an order of magnitude greater than were potential rates of in vitro methanogenesis, indicating that methanotrophic bacteria could intercept most of the methane produced in the sediments before it was lost to the atmosphere. This finding has implications for environmental management strategies designed to limit methane emissions from natural wetlands, and for fundamental studies of carbon cycling in natural freshwater environments, where methane emissions have been used as an indicator of rates of anaerobic decay of plant detritus. Methane oxidation was an obligately aerobic process, and added sulphate or nitrate could not replace oxygen as a suitable oxidant. Ammonium had little effect on methane oxidation, but allythiourea was strongly inhibitory.     

AN INVESTIGATION INTO THE CAUSE OF THE SPONTANEOUS AGGREGATION OF FLAGELLATES AND INTO THE REACTIONS OF FLAGELLATES TO DISSOLVED OXYGEN : PART II.

Spontaneous aggregations of flagellates are formed under the cover-glass because the organisms are attracted to and remain in regions where the concentration of dissolved oxygen is less than the saturation concentration under atmospheric partial pressure. These regions of lessened oxygen content arise towards the center of the liquid beneath the cover-glass, owing to the oxygen consumed by the flagellates in respiration not being replaced here by the solution of atmospheric oxygen, as it is along the edges of the liquid. The flagellates, however, are insensitive to the attraction of regions of lessened oxygen concentration when the oxygen concentration throughout the liquid is above a certain value. Therefore, for the aggregations to form, either the initial concentration of dissolved oxygen must be below this limiting value, or an interval of time must first elapse after the making of the preparation until the respiration of the organisms has reduced the oxygen concentration throughout the liquid down to this limiting value. The aggregations will then form because the flagellates have become positively chemotropic to the lower concentration of oxygen at the center of the liquid. Once established, such an aggregation of flagellates does not remain long in the same form. An area free from flagellates appears at the center of the aggregation so that the organisms lie in a circular band surrounding the clear area. The latter increases in size and its bordering band of flagellates in diameter, the band gradually becoming less circular and more square in shape, if the cover-glass is a square one. The clear central area is a region where the oxygen consumption of the flagellates has reduced the oxygen content to such a low value that the organisms are forced to leave the region. They collect in a band where the concentration of dissolved oxygen is an optimum for them. It is the equilibrium position between the oxygen consumed at the center and that diffusing in from the edges of the liquid. As the consumption at the center is more rapid than the replacement from the edge, the flagellate band moves outwards until it becomes stationary at a position where the rates of consumption and replacement of oxygen are equal. Although the flagellates collect in this manner in regions of optimum oxygen concentration, yet greater concentrations of dissolved oxygen have no injurious effect on them. Concentrations of dissolved oxygen lower than the optimum have the effect of inhibiting the movement of the flagellates. They recover their activity, however, immediately they are given access to dissolved oxygen again. Work done in the past on chemotropism of flagellates will have to be revised in the light of the above facts, since the oxygen content of solutions used has never been taken into account.