Untangling the assembly of littoral macroinvertebrate communities through measures of functional and phylogenetic alpha diversity

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Assembly rules of coral reef fish communities along the depth gradient

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Trophic interactions between native and introduced fish species in a littoral fish community

The trophic interactions between 15 native and two introduced fish species, silverside Odontesthes bonariensis and rainbow trout Oncorhynchus mykiss, collected in a major fishery area at Lake Titicaca were explored by integrating traditional ecological knowledge and stable‐isotope analyses (SIA). SIA suggested the existence of six trophic groups in this fish community based on δ¹³C and δ¹⁵N signatures. This was supported by ecological evidence illustrating marked spatial segregation between groups, but a similar trophic level for most of the native groups. Based on Bayesian ellipse analyses, niche overlap appeared to occur between small O. bonariensis (<90 mm) and benthopelagic native species (31·6%), and between the native pelagic killifish Orestias ispi and large O. bonariensis (39%) or O. mykiss (19·7%). In addition, Bayesian mixing models suggested that O. ispi and epipelagic species are likely to be the main prey items for the two introduced fish species. This study reveals a trophic link between native and introduced fish species, and demonstrates the utility of combining both SIA and traditional ecological knowledge to understand trophic relationships between fish species with similar feeding habits.     

Anthropogenic disturbance homogenizes seagrass fish communities

Anthropogenic activities have led to the biotic homogenization of many ecological communities, yet in coastal systems this phenomenon remains understudied. In particular, activities that locally affect marine habitat‐forming foundation species may perturb habitat and promote species with generalist, opportunistic traits, in turn affecting spatial patterns of biodiversity. Here, we quantified fish diversity in seagrass communities across 89 sites spanning 6° latitude along the Pacific coast of Canada, to test the hypothesis that anthropogenic disturbances homogenize (i.e., lower beta‐diversity) assemblages within coastal ecosystems. We test for patterns of biotic homogenization at sites within different anthropogenic disturbance categories (low, medium, and high) at two spatial scales (within and across regions) using both abundance‐ and incidence‐based beta‐diversity metrics. Our models provide clear evidence that fish communities in high anthropogenic disturbance seagrass areas are homogenized relative to those in low disturbance areas. These results were consistent across within‐region comparisons using abundance‐ and incidence‐based measures of beta‐diversity, and in across‐region comparisons using incidence‐based measures. Physical and biotic characteristics of seagrass meadows also influenced fish beta‐diversity. Biotic habitat characteristics including seagrass biomass and shoot density were more differentiated among high disturbance sites, potentially indicative of a perturbed environment. Indicator species and trait analyses revealed fishes associated with low disturbance sites had characteristics including stenotopy, lower swimming ability, and egg guarding behavior. Our study is the first to show biotic homogenization of fishes across seagrass meadows within areas of relatively high human impact. These results support the importance of targeting conservation efforts in low anthropogenic disturbance areas across land‐ and seascapes, as well as managing anthropogenic impacts in high activity areas.     

The influence of residential and cottage development on littoral zone fish communities in a mesotrophic north temperate lake

We used the rapid visual technique (RVT), an underwater visual assessment method developed in marine environments, to assess the influence of residential and cottage development on littoral zone fish communities in Pigeon Lake, a shallow, mesotrophic Canadian lake with extensive shoreline disturbance. We used RVT to assess 135 sites, stratified by degree of residential and cottage development (undeveloped, moderately developed, highly developed) and habitat type (three substrate/vegetation categories). Sites with different degrees of residential and cottage development did not differ significantly in species richness. When the RVT site scores of each species life stage (young-of-year, juveniles and adults) were compared among development categories, only 11% of species life stages showed significant differences; all were most abundant in moderately developed sites. Habitat had a greater influence than development on within-taxon abundance, as 46% of species life stages showed significant among-habitat differences in RVT score. The absence of significant fish community differences between developed and undeveloped sites may be due to the shallowness, extensive macrophyte cover and raised shorelines from the construction of the Trent-Severn Waterway. However, there do appear to be changes in the fish community over the last 35 years, as six cyprinids and one cyprinodont species that were present in Pigeon Lake in the 1970s were not detected by our sampling. RVT provided comparable data to that obtained by straight line transects on the relative abundance of species in the lake, but RVT was more effective at detecting species and life stages present at individual sites.     

Temporal variation in juvenile fish communities of Kaunas reservoir littoral zone,Lithuania

The aim of this study was to assess juvenile fish communities in terms of species composition, fish diversity and density in the littoral zone of the Kaunas reservoir before (in 1989–1990, period I) and after (in 1999–2000, period II, and in 2006–2007, period III) launching the Kruonis hydroelectric pumped plant (Kruonis HPP). During the whole research period, 20 fish species were caught. According to the frequency of occurrence, the three-spined stickleback Gasterosteus aculeatus, European perch Perca fluviatilis and roach Rutilus rutilus were regarded as constant species in all investigated periods. Significant differences were established in juvenile fish community density between period I and periods II and III, whereas species richness (S) and species diversity indices (H′, J′) did not change significantly. The density of the shoreline community in period III was more than two times lower than in period I, probably due to higher fluctuations in water level of the reservoir, resulting from the Kruonis HPP operation.     

Impact of exotic fish removal on native communities in farm ponds

Introduced largemouth bass (Micropterus salmoides spp.) and bluegill (Lepomis macrochirus spp.) are thought to threaten native aquatic organisms worldwide and hence their eradication has recently begun in Japan. Our previous studies suggested that the removal of largemouth bass increases native fish, shrimp, dragonflies, and exotic crayfish, but decreases macrophytes. To test this prediction, we removed the exotic fishes by draining farm ponds and compared the numbers of these organisms before and after the drain, as well as between drained and undrained ponds. The number of dragonfly Pseudothemis zonata, crayfish, shrimp, and goby increased rapidly after the drain, but the coverage of macrophyte declined. The reduction in macrophyte is assumed to be caused by increased herbivory by crayfish. The number of exuviae of damselfly Cercion calamorum and the total number of species of odonate also decreased after the drain. These decreases can be due to the reduction of macrophyte because reduced odonate species are known to use macrophytes as oviposition sites. Therefore, the removal of largemouth bass has a potential to cause negative effects on some native organisms. We propose that reduction of exotic crayfish should be considered when eradicating the exotic fishes.     

广西地区喀斯特与非喀斯特山地森林树木物种多样性及系统发育结构比较

以广西地区植被调查集资料总共365个群落样方(样方面积在300—1000 m2,50%左右为400 m2)为基础,将样方分为海拔≤1000 m喀斯特和非喀斯特森林以及海拔1000 m的非喀斯特森林三类生境,探讨这3种生境森林物种丰富度和群落系统发育结构差异及其与年均温的关系。结果表明,海拔≤1000 m非喀斯特森林含有4种以上的科比海拔1000 m非喀斯特森林多24科,比喀斯特森林多18科,其中樟科、壳斗科、山茶科、杜鹃花科等都是两种非喀斯特森林生境的重要组成科;大戟科为喀斯特森林含有种数最多的科,其中出现在非喀斯特森林的山茶科和杜鹃花科等没有在喀斯特森林出现。森林物种多样性及系统发育指数与年均温不相关或相关不强;海拔≤1000 m的喀斯特与非喀斯特森林的Gleason物种多样性指数没有显著差异,而海拔1000 m的非喀斯特森林的Gleason指数比另外两种生境显著高。海拔≤1000 m非喀斯特森林系统发育多样性PD指数比中山地带的非喀斯特生境的森林高。喀斯特森林和海拔1000 m非喀斯特的绝大部分样地以及海拔≤1000 m的非喀斯特大部分样地都表现出系统发育结构聚集,推测生境过滤在广西地区喀斯特和非喀斯特森林群落构建中发挥着主要作用。但是喀斯特和海拔1000 m的非喀斯特两种生境森林群落发生系统发育发散的比例都比海拔≤1000 m的非喀斯特森林低,揭示生境过滤在这两个生境更为明显。     

Trait-based filtering from the regional species pool into local grassland communities

Aims For plants to establish in a local community from a pool of possible colonizers from the region, it must pass through a series of filters. Which of the filters is most important in this process has been much debated. In this study, we explored how species are filtered from the regional species pool into local communities. The aim was to determine if differences in species abundance and functional traits could explain which species from the regional species pool establish at the local scale and if the filtering differed between grassland communities.Methods This study took place in a cultivated landscape in southeastern Sweden. We estimated plant species abundance in 12 ex-arable field sites and 8 adjacent seminatural grassland sites and in a 100-m radius around the center of each site. We used Monte Carlo simulations to examine if species abundance and functional traits (height, seed mass, clonal abilities, specific leaf area and dispersal method) controlled the filtering of species from the regional pool into local communities.Important findings On average, only 28% of species found in the regional pool established in the ex-arable field sites and 45% in the seminatural grassland sites, indicating that the size of the regional species pool was not limiting local richness. For both grassland types, species abundance in the regional pool was positively correlated with species occurrence at the local scale. We found evidence for both species interaction filtering and dispersal limitation influencing the local assembly. Both local and regional processes were thus influencing the filtering of species from the regional species pool into local communities. In addition, the age of the communities influenced species filtering, indicating that community assembly and the importance of different filters in that process change over succession.     

Predictors of Introduction Success in the South Florida Avifauna

Biological invasions are an increasing global challenge, for which single-species studies and analyses focused on testing single hypotheses of causation in isolation are unlikely to provide much additional insight. Species interact with other species to create communities, which derive from species interactions and from the interactions of species with the scale specific elements of the landscape that provide suitable habitat and exploitable resources. I used logistic regression analysis to sort among potential intrinsic, community and landscape variables that theoretically influence introduction success. I utilized the avian fauna of the Everglades of South Florida, and the variables body mass, distance to nearest neighbor (in terms of body mass), year of introduction, presence of congeners, guild membership, continent of origin, distribution in a body mass aggregation or gap, and distance to body-mass aggregation edge (in terms of body mass). Two variables were significant predictors of introduction success. Introduced avian species whose body mass placed them nearer to a body-mass aggregation edge and further from their neighbor were more likely to become successfully established. This suggests that community interactions, and community level phenomena, may be better understood by explicitly incorporating scale.     

The littoral fish community of the Lebanese rocky coast (eastern Mediterranean Sea) with emphasis on Red Sea immigrants

The organisation of the coastal rocky fish community of Lebanon was investigated for the first time, using visual censuses. A total of 62 fish species were recorded between the surface and 32 m depth, 8 species being Red Sea migrants. Species richness and fish abundance were positively correlated first with substrate complexity and second with depth. The trophic structure of the community was dominated by diurnal zooplanktivores (Chromis chromis, Oblada melanura and Spicara smaris) and mesocarnivores 1 (Coris julis and Thalassoma pavo), and did not vary significantly with depth. The Lessepsian migrants represented 13% of the species richness and 19% of the total abundance of individuals. They dominated among herbivores, nocturnal zooplanktivores and macrocarnivores. The Lessepsian Siganus luridus and S. rivulatus (Siganidae), Pempheris vanicolensis (Pempheridae) and Sargocentron rubrum (Holocentridae) were now among the most common fish species on the Lebanese rocky coast. Lessepsian fish species displayed either similar ecological niches in the Red Sea and in the Levantine basin (P. vanicolensis, S. rubrum) or an enlargement of their depth distribution towards deeper waters in their new environment (S. luridus, S. rivulatus). This study will serve as a baseline for future studies as eastern Mediterranean communities are subjected to a steady increase in Red Sea migrant species.     

Species introduced from nearby sources have a more homogenizing effect than species from distant sources: evidence from plants and fishes in the USA

Biotic homogenization is occurring in many biota as widespread introduced species are replacing unique native species. Although efforts to document homogenization have increased, no studies have explicitly compared the homogenizing effects of species introduced from distant areas to the homogenizing effects of species introduced from more proximate areas. The author analysed three data sets, at different scales and in different taxa, that distinguish species introduced from distant sources (e.g. outside the US) from species introduced from less distant sources (e.g. within the United States). These data include: plant introductions among eight major US cities and fish introductions among 12 US states and among 10 watersheds from New York state. The authors found that, for all data sets, species introduced from less distant sources (within the US) have a greater homogenizing effect on community composition than species from more distant sources (outside the US). In agreement with other studies, the author also find that, in terms of absolute numbers, introductions from nearby sources are far more frequent than introduction of species from distant sources. While tentative, these findings point out the importance of considering species introduced from nearby areas (e.g., extralimital native species) when discussing biotic homogenization from human activities.     

Assessment of littoral algal diversity from the northern Gulf of Mexico using environmental DNA metabarcoding

Traditional methods for algal biodiversity monitoring are costly and time inefficient because they rely on high‐level taxonomic expertise to address species identity problems involving phenotypic plasticity and morphological convergence. These problems are exacerbated in regions such as the Gulf of Mexico, that has a limited history of phycological exploration, but that are economically important or threatened by numerous anthropogenic stressors. Given the high pace of disturbance to natural systems, there is a critical need for expedient and cost‐effective tools for the study of benthic algal communities. Here we document the use of environmental DNA metabarcoding, using the partial LSU rDNA and 23S rDNA plastid molecular markers, to elucidate littoral algal diversity in the Northern Gulf of Mexico. We assigned 73.7% of algal OTUs to genus and 59.6% to species ranks. Our current study detected molecular signals for 35 algal/protist species with no previous reports in the Gulf of Mexico, thus providing an important, molecular‐validated, baseline of species richness for this region. We also make several bioinformatic recommendations for the efficient use of high‐throughput sequence data to assess biological communities.     

Landscape‐scale determinants of non‐native fish communities

Aim Predicting and preventing invasions depends on knowledge of the factors that make ecosystems susceptible to invasion. Current studies generally rely on non‐native species richness (NNSR) as the sole measure of ecosystem invasibility; however, species identity is a critical consideration, given that different ecosystems may have environmental characteristics suitable to different species. Our aim was to examine whether non‐native freshwater fish community composition was related to ecosystem characteristics at the landscape scale. Location United States. Methods We described spatial patterns in non‐native freshwater fish communities among watersheds in the Mid‐Atlantic region of the United States based on records of establishment in the U.S. Geological Survey’s Nonindigenous Aquatic Species Database. We described general relationships between non‐native species and ecosystem characteristics using canonical correspondence analysis. We clustered watersheds by non‐native fish community and described differences among clusters using indicator species analysis. We then assessed whether non‐native communities could be predicted from ecosystem characteristics using random forest analysis and predicted non‐native communities for uninvaded watersheds. We estimated which ecosystem characteristics were most important for predicting non‐native communities using conditional inference trees. Results We identified four non‐native fish communities, each with distinct indicator species. Non‐native communities were predicted based on ecosystem characteristics with an accuracy of 80.6%, with temperature as the most important variable. Relatively uninvaded watersheds were predicted to be invasible by the most diverse non‐native community. Main conclusions Non‐native species identity is an important consideration when assessing ecosystem invasibility. NNSR alone is an insufficient measure of invasibility because ecosystems with equal NNSR may not be equally invasible by the same species. Our findings can help improve predictions of future invasions and focus management and policy decisions on particular species in highly invasible ecosystems.     

Spatial and temporal variation of fish communities in secondary channels of the San Juan River, New Mexico and Utah

Spatial and temporal variation of fish communities in four secondary channels of the San Juan River between Shiprock, NM and Bluff, UT were investigated from July 1993 through November 1994. Fish abundance and habitat availability data were collected to determine if physical attributes of sites influenced spatial and temporal variation in their fish communities. Stability of habitat was shown to positively influence the stability of the fish community. Analysis of variance revealed greater spatial than temporal variation in the abundance of red shiner, Cyprinella lutrensis, fathead minnow, Pimephales promelas, and flannelmouth sucker Catostomus latipinnis, while speckled dace, Rhinichthys osculus showed greater temporal variation. Ordination, using detrended correspondence analysis, revealed variation in fish communities by site, date, and sample year. Spatial variation was greatest during low-flow periods when the greatest differences in habitat among the four sites occurred. Spring runoff had the greatest temporal effect on the fish communities in secondary channels and appeared to reset the communities by displacing those species that were less resistant to increased current velocities. This annual event may help maintain native fish species adapted to these conditions in the San Juan River while moderating the abundance of nonnative fish species.     

城镇化背景下深圳典型流域鱼类群落特征及驱动因子

理解城镇的快速发展对河流鱼类群落结构的影响,是城镇河流科学管理和生物多样性保护的关键基础。本研究于2019年丰水期（8月）和枯水期（11月）,选取我国城镇化典型城市-深圳域内两个处于不同城镇化程度的代表性流域,应用多重统计方法比较分析了流域间鱼类群落结构的差异,并探讨了驱动鱼类群落变异的关键环境要素。结果发现,城镇化程度高的观澜河流域其鱼类种类组成、优势类群、生物多样性指数与城镇化程度低的坪山河流域有明显差别。 具体表现为：城镇化程度高的流域土著敏感种类如异鱲、吸鳅等几近消失,优势类群为外来入侵耐受种类,其物种多样性显著低于城镇化程度低的流域（P<0.05）。同时,外来鱼类在城镇河段其数量占比平均达92.5%,广泛分布于深圳城镇河流中。在环境因素方面,城镇化程度高的观澜河流域水体理化指标总氮、总磷、氨氮、化学需氧量、生化需氧量、高锰酸盐指数均显著性高于城镇化程度低的坪山河流域（P<0.05）。基于Bray-Curtis距离的冗余分析显示：城镇用地占比和总氮是影响观澜河和坪山河流域鱼类群落差异的主要因素。城镇化进程中河流生境的改变已影响到土著鱼类的生物多样性。因此,推动以恢复土著鱼类生物多样性的河流生态治理与保护是今后水生态目标管理的重要方向。     

The history of the minnow Phoxinus phoxinus (L.) in Norway: from harmless species to pest

The causes, effects and extent of minnow Phoxinus phoxinus introductions in Norway are reviewed to assess why the introductions have had severe effects, especially where brown trout Salmo trutta is the only fish species present. The natural distribution of minnow in Norway was mainly restricted to low altitude localities in the south-eastern part of the country and in some northern areas. The distribution area expanded considerably throughout the 1900s, especially in mountain areas, due in part to the use of minnows as live bait for angling. Although minnow densities do not seem unusually high in the relatively complex fish communities of its native range, the species can achieve very high population densities when introduced to communities with few fish species, such as in the numerous recently invaded lakes where brown trout was the only fish species present. The dense minnow populations in these lakes appear to have led to reduced recruitment and growth rates in the brown trout, with abundances on average 35% lower in lakes where minnow has been introduced. The success of minnow in harsh habitats demonstrates their phenotypic and ecological plasticity, but also implies that their original distribution in Norway was restricted by early immigration history and not by environmental limitations. This suggests that human-assisted spread of the species could have strong adverse effects in Scandinavia lakes of low fish species richness.     

Correlated Non-native Species Richness of Birds, Mammals, Herptiles and Plants: Scale Effects of Area, Human Population and Native Plants

Several extrinsic factors (area, native species diversity, human population size and latitude) significantly influence the non-native species richness of plants, over several orders of magnitude. Using several data sets, I examine the role of these factors in non-native species richness of several animal groups: birds, mammals and herptiles (amphibians, reptiles). I also examine if non-native species richness is correlated among these groups. I find, in agreement with Sax [2001, Journal of Biogeography 28: 139–150], that latitude is inversely correlated with non-native species richness of many groups. Once latitude is accounted for, area, human population size and native plant species richness are shown to be important extrinsic factors influencing non-native animal species. Of these extrinsic factors, human population size and native plant species richness are the best predictors of non-native animal species richness. Area, human population size and native plant species richness are highly intercorrelated, along with non-native species richness of all taxa. Indeed a factor analysis shows that a single multivariate axis explains over half of the variation for all variables among the groups. One reason for this covariation is that humans tend to most densely occupy the most productive and diverse habitats where native plant species richness is very high. It is thus difficult to disentangle the effects of human population size and native species richness on non-native species richness. However, it seems likely that these two factors may combine to increase non-native species richness in a synergistic way: high native species richness reflects greater habitat variety available for non-native species, and dense human populations (that preferentially occupy areas rich in native species) increase non-native species importation and disturbance of local habitats.