Grey-faced petrel (Pterodroma gouldi) productivity unaffected by kiore (Pacific rats,Rattus exulans) on a New Zealand offshore island

Burrow-nesting seabird populations are vulnerable to predation by introduced rats, because of their nesting habits and slow life histories. We investigated whether control of kiore (Pacific rats, Rattus exulans) by removal trapping, and during an unsuccessful community-led island-wide eradication attempt, had any effects on nest survival of grey-faced petrels (Pterodroma gouldi) on Ririwha (Stephenson Island), northeastern New Zealand. We compared nest survival between two plots at which rats were trapped and six un-trapped plots in 2010, as well as at all plots during and after the poisoning programme in 2011–2012. Neither mean rates of breeding burrow occupancy nor nest survival differed between trapped and un-trapped plots in 2010. We found no significant differences between years or between plots throughout the poisoning programme. Extrapolation of daily nest survival rates to the full 172-day combined egg and chick period gave an estimate of mean annual productivity for all plots combined of 0.285 (95% confidence interval 0.252–0.318), which is higher than on comparable predator-free islands. Although the absence of a detectable effect of kiore on breeding grey-faced petrels on Ririwha is reassuring, we can be less sure that smaller burrow-nesting seabirds on the island are secure.     

Notes on New Zealand mammals 7. An extension of the known range for pacific rat (Rattus exulans,kiore) in New Zealand

Abstract

Neothyris lentieularis, Terebratella sanguinea, and T. ineonspicua occur as both attached and free-lying populations; Liothyrella neozelaniea and Nolosaria nigrieans assume the attached habilt only. Attached individuals of these: five species examined in situ were consistently oriented with the dDrsail valve next to, the substralte; preferred orientations to other axes (right-left and anterior-posterior) were not evident. Free-lying individuals of T. ineonspicua and T. sanguinea were randomly oriented wi1th regard to both axes, but free-lying N. lenticularis showed a preference for lying on the dorsal valve. The position of N. lenticularis relative to the anterior-posterior axis Couid apparently be influenced by the strength of water currents. Neothyris compressa was not observed in situ, but free-lying individuals in an aquarium oriented actively to strong currents. Use of the terms ‘free-lying’ and ‘attached’,is examined in rellation to fossil and living popuhlltions.     

Denning behaviour of ship rats (Rattus rattus) on Taukihepa,a seabird breeding island

Abstract

Den sites of 14 ship rats (Rattus rattus) were located daily during the rat breeding season on Taukihepa (Big South Cape), a seabird island southwest of Rakiura (Stewart Island). In contrast to other New Zealand studies, no arboreal dens were found. Den sites on Taukihepa were in ferns, under logs, in woodpiles, or underground in sooty shearwater (Puffinusgriseus) breeding burrows. The number of times known den sites used was positively related to the amount of leaf litter and woodpiles near the den sites. Overall, 24% of radio‐tagged rats were sharing den sites on any given day. While there was considerable individual variation in the number of times den sites were used, female rats tended to reuse den sites more than males. Many rats were found in dens alone, but frequently males and females shared. Occasionally two females and one male denned together, as did two females, whereas males never denned with another male.     

Heavy rimu (Dacrydium cupressinum) mast seeding and rat (Rattus spp.) population eruptions on Stewart Island/Rakiura

Abstract

This study aimed to quantify changes in rat abundance and population structure before, during, and after a rimu (Dacrydium cupressinum) mast seed event in lowland forest on Stewart Island, New Zealand. Rats, primarily ship rats (Rattus rattus), were trapped in low numbers throughout the study period (March 2000‐March 2003), except when they erupted to very high abundance in spring 2002, shortly after heavy rimu seed fall. In the immediate post‐peak phase, scavenging of trapped rats increased substantially; rats were seen and trapped in daylight; and weights of adult female rats were low in relation to their size, which suggests that food shortage was the cause of the subsequent steep decline in abundance. Rat eruptions have been observed on Stewart Island after heavy rimu seed fall several times over the past 40 years. Eruptions of rats caused by heavy rimu seed‐fall may have triggered the invasion of nearby islands by rats, and caused the extinction of several native species on Stewart Island.     

Sophora sect. Edwardsia (Fabaceae): further evidence from nrDNA sequence data of a recent and rapid radiation around the Southern Oceans

Phylogenetic relationships are inferred from nuclear ribosomal internal transcribed spacer sequences for species belonging to Sophora sect. Edwardsia from South America, New Zealand, Lord Howe Island, Hawai'i, La Réunion, Easter Island, and Raivavae Island (French Polynesia). Results support the monophyly of sect. Edwardsia , but relationships among the species from this section are poorly resolved due to most species having identical sequences. The origin of Sophora sect. Edwardsia is discussed, as competing hypotheses have proposed the group originated in South America from a North American ancestor, or in the north-west Pacific. We suggest sect. Edwardsia may have arisen in the north-west Pacific from a Eurasian ancestor.  © The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 140 , 435–441.     

Competition for space between introduced brown trout (Salmo trutta L.) and a native galaxiid (Galaxias vulgaris Stokell) in a New Zealand stream

Increasing circumstantial evidence indicates that the introduction of brown trout ( Salmo trutta L.) to New Zealand has caused a widespread decline in native fish populations but few of the underlying mechanisms have been investigated. The possibility of spatial competition was investigated by comparing the microhabitat used by native Galaxias vulgaris Stokell (Family Galaxiidae) that were sympatric and allopatric with brown trout. A range of microhabitat variables was measured from random locations where G. vulgaris were present in the Shag River during the day. G. vulgaris preferred coarse substrates, using them as resting places, but showed no other microhabitat preferences. This pattern of microhabitat use did not change in the presence of brown trout although galaxiid densities were considerably lower. Experiments in in situ stream channels confirmed that competition for space does not occur during the day even at high galaxiid densities. This situation changed dramatically at night, however, with G. vulgaris spending significantly more time in slower areas when trout were present. G. vulgaris feeds on drifting invertebrates, so brown trout could affect the galaxiids deleteriously by forcing them to occupy less profitable feeding positions. Interspecific competition for space, perhaps combined with competition for food and predation by trout, could explain declines in G. vulgaris populations.     

Trophic ecology of an introduced top predator (Felis catus) on a small African oceanic islet (Santa Luzia,Cabo Verde Islands)

Studies on feral cat diet offer important ecological information and are the first step towards determining their impact upon endangered species. However, in comparing seasonal changes in diet with seasonal prey availability, the scarce amount of research into oceanic islands worldwide must be considered when deciding if a specific population is actually affected by cat predation. Cat diet was analysed on Santa Luzia (Cabo Verde Islands) since this invasive predator is considered one of the main threats to native endangered species that require conservation measures. These previous studies were carried out in different seasons, providing contrasting results, skinks being more preyed upon in the rainy season and mice in the driest periods. To check these different results, we focussed on how cat diet varied seasonally in response to changes in prey abundance. Saurians were the most important prey group, followed by mice, invertebrates and birds. No seasonal differences were, however, observed in the different prey groups consumed, saurians being the main prey in both seasons. All cases reflected their respective abundances. Results corroborate the generalist and opportunistic trophic ecology of feral cats, providing important information to assess their impact on prey populations and design future eradication programmes.     

The impact of introduced ship rats (Rattus rattus) on seedling recruitment and distribution of a subantarctic megaherb (Pleurophyllum hookeri)

Abstract The impact of introduced ship rats (Rattus rattus) on recruitment of the megaherb Pleurophyllum hookeri Buchan. (Asteraceae) was examined on subantarctic Macquarie Island, an island with no extant native terrestrial vertebrates. Pleurophyllum hookeri (Asteraceae) forms a dominant component of the Macquarie Island vegetation and is restricted to the subantarctic. The Macquarie Island population of P. hookeri is the most extensive and intact. Introduced ship rats (Rattus rattus) are well established in tall tussock grassland of Macquarie Island. We detected rat activity for the first time within P. hookeri herbfields, in autumn 2000. We found rats were destroying up to 90% of racemes. By excluding rats from caches of inflorescences that they had formed, we found they were having a significant negative effect on initial recruitment and seedling survival within the caches. However, because of high seedling mortality after 1 year, there was no sustained impact of the exclosures on P. hookeri seedling density.     

Seasonal monogamy and multiple paternity in a wild population of a territorial reptile (tuatara)

Investigating the mating system of a population provides insight into the evolution of reproductive patterns, and can inform conservation management of threatened or endangered species. Combining behavioural and genetic data is necessary to fully understand the mating system and factors affecting male reproductive success, yet behavioural data are often difficult to collect for threatened species. In the present study, we use behavioural data and paternity analyses to characterize the mating system of a high density population of a long-lived, ancient reptile (tuatara, Sphenodon punctatus ). We further investigate the phenotypic traits (including body size, body condition, tail length, and ectoparasite load) that affect male reproductive success. Our behavioural data reflect a seasonally monogamous system with low levels of polyandry and polygyny that are consistent with male mate guarding. Male reproduction is highly skewed (only 25–30% of males are successful), and body size is the primary predictor of male reproductive success. Based on the genetic data, multiple paternity was found in only 8% of clutches, and the results of the paternity analyses showed monandrous clutches from socially polyandrous females. Our behavioural and genetic results revealed complexities in female mating patterns that support the potential for cryptic female choice or sperm competition. This warrants further experimental investigation into the mechanisms underlying reptile fertilization and the disparities between social and genetic polyandry in wild populations.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 161–170.     

Taphonomy and systematics of a new Late Cretaceous verrucid barnacle (Cirripedia,Thoracica) from Canterbury,New Zealand

Abstract: Cirripede remains (Thoracica, Verrucomorpha), found associated with the mosasaur Prognathodon waiparaensis  Welles and Gregg, 1971 in glauconitic sands of the Late Cretaceous Conway Formation exposed along the Waipara River bank (mid‐Canterbury, New Zealand), are identified as a new species, Verruca sauria sp. nov. On the basis of taphonomy, it is deduced that these verrucids grew on a postmortem accumulation of mosasaur bones under very quiescent conditions. The current amphitropical distribution of the earliest known verrucids, i.e. V. sauria sp. nov., V. prisca  Bosquet, 1854 , V. pusilla  Bosquet, 1857 and V. tasmanica  Buckeridge, 1983 , is rationalized in the light of Tethyan palaeogeography.     

Population structure and biogeography of Hemiphaga pigeons (Aves: Columbidae) on islands in the New Zealand region

Aim The New Zealand avifauna includes lineages that lack close relatives elsewhere and have low diversity, characteristics sometimes ascribed to long geographic isolation. However, extinction at the population and species levels could yield the same pattern. A prominent example is the ecologically important pigeon genus Hemiphaga. In this study, we examined the population structure and phylogeography of Hemiphaga across islands in the region. Location New Zealand, Chatham Islands and Norfolk Island. Methods Mitochondrial DNA was sequenced for all species of the genus Hemiphaga. Sixty‐seven individuals from mainland New Zealand (Hemiphaga novaeseelandiae novaeseelandiae), six of the Chatham Islands sister species (Hemiphaga chathamensis), and three of the extinct Norfolk Island subspecies (Hemiphaga novaeseelandiae spadicea) were included in this study. Novel D‐loop and cytochrome b primers were designed to amplify DNA from museum samples. Additionally, five other mitochondrial genes were used to examine placement of the phylogenetic root. Results Analyses of mitochondrial DNA sequences revealed three Hemiphaga clades, consistent with the allopatric populations of recognized (sub)species on oceanic islands. Of the 23 D‐loop haplotypes among 67 New Zealand pigeons (Hemiphaga n. novaeseelandiae), 19 haplotypes were singletons and one haplotype was common and widespread. Population genetic diversity was shallow within and between New Zealand populations, indicating range expansion with high inter‐population exchange. Tentative rooting of the Hemiphaga clade with cyt b data indicates exchange between mainland New Zealand and the Chatham Islands prior to colonization of Norfolk Island. We found low genetic divergence between populations on New Zealand, the Chatham Islands and Norfolk Island, but deep phylogenetic divergence from the closest living relatives of Hemiphaga. Main conclusions The data are consistent with the hypothesis of population reduction during the Pleistocene and subsequent expansion from forest refugia. Observed mobility of Hemiphaga when feeding helps explain the shallow diversity among populations on islands separated by many hundreds of kilometres of ocean. Together with comparison of distribution patterns observed among birds of the New Zealand region, these data suggest that endemicity might represent not long occupancy of an area, but descent from geologically recent colonizations. We consider the role of lineage pruning in creating the impression of old endemicity.     

Checklist of the ants (Hymenoptera,Formicidae) of the Solomon Islands and a new survey of Makira Island

The intent of this paper is to facilitate future research of the Solomon Islands ant fauna by providing the first comprehensively researched species inventory in over 75 years. The species list presented here includes the names of all ant species recorded from the islands that are available in the literature together with specimen records from several museum collections and new records from our 2008 Makira field expedition. All the names of described species presented are valid in accordance with the most recent Formicidae classification. In total, the checklist is composed of 237 species and subspecies (including 30 morphospecies) in 59 genera representing nine subfamilies. We report that the recent field expedition added 67 new species records to Makira and 28 new species records to the Solomon Islands. Our research recovered species occurrence records for 32 individual islands and five island groups. The five islands with the highest number of recorded species are: Makira (142 spp.), Guadalcanal (107 spp.), Malaita (70 spp.), Santa Isabel (68 spp.), and Rennell (66 spp.). Based on our results, we discuss the taxonomic composition of the archipelago’s ant fauna, which islands are most in need of additional sampling, and the importance of establishing biodiversity baselines before environmental threats such as the invasive ant Wasmannia auropunctata cause irrevocable harm to the native biodiversity.     

Contemporary effective population size and predicted maintenance of genetic diversity in the endangered kea (Nestor notabilis)

Population size and the potential for maintenance of genetic diversity are critical information for the monitoring of species of conservation concern. However, direct estimates of population size are not always feasible, making indirect genetic approaches a valuable alternative. We estimated contemporary effective population size (N_e) in the endangered kea (Nestor notabilis) using three different methods. We then inferred the census size (N_C) using published N_e/N_C ratios and modelled the future maintenance of genetic diversity assuming a number of demographic parameters. Short-term N_e was small with a range-wide N_e?N_C was within the range of the current estimate (c. 1000–5000). Forward simulations showed low probability of retaining 90% of rare alleles without immigration. However, the probability of maintaining genetic diversity was high with immigration, juvenile survival of?≥?30%, and an initial sex ratio of c. 0.5–0.6. Despite the low N_e in kea, predator control and/or artificial immigration might be sufficient to maintain the present genetic diversity.     

The identity of Tetracyclus constrictus (Bacillariophyceae) and a description of Tetracyclusbradburyii, a new miocene species

The siliceous valves from species of Tetracyclus (Bacillariophyceae) have variable but characteristic shapes. In this paper, species characterised by having valves with a central constriction are discussed. This distinctive shape occurs during only a period of its lifecycle. Tetracyclus constrictus and Tetracyclus celatom have been applied to fossil specimens occurring in deposits from the west coast of the USA and the east coast of Russia. Do these names apply to two closely related species or are they one and the same taxon? Two further species, Tetracyclus javanicus and Tetracyclus peragalli, have been involved in the identity of T. constrictus–T. celatom. T. constrictus M. Peragallo is the correct name and author for specimens of the extinct Miocene, circum-Pacific (or northern) fossil species with valves panduriform with rounded poles; T. javanicus refers to a species found living on Java only; fossil specimens usually referred to T. javanicus (Java) belong to a new taxon, Tetracyclus bradburyii (USA); T. peragalli is an extinct Miocene fossil, with a northern hemisphere distribution; small (≤10 μm) circular/elliptical fossil specimens, found alongside other specimens, are difficult (if not impossible) to determine to species level.     

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale

Much biodiversity data is collected worldwide, but it remains challenging to assemble the scattered knowledge for assessing biodiversity status and trends. The concept of Essential Biodiversity Variables (EBVs) was introduced to structure biodiversity monitoring globally, and to harmonize and standardize biodiversity data from disparate sources to capture a minimum set of critical variables required to study, report and manage biodiversity change. Here, we assess the challenges of a ‘Big Data’ approach to building global EBV data products across taxa and spatiotemporal scales, focusing on species distribution and abundance. The majority of currently available data on species distributions derives from incidentally reported observations or from surveys where presence‐only or presence–absence data are sampled repeatedly with standardized protocols. Most abundance data come from opportunistic population counts or from population time series using standardized protocols (e.g. repeated surveys of the same population from single or multiple sites). Enormous complexity exists in integrating these heterogeneous, multi‐source data sets across space, time, taxa and different sampling methods. Integration of such data into global EBV data products requires correcting biases introduced by imperfect detection and varying sampling effort, dealing with different spatial resolution and extents, harmonizing measurement units from different data sources or sampling methods, applying statistical tools and models for spatial inter‐ or extrapolation, and quantifying sources of uncertainty and errors in data and models. To support the development of EBVs by the Group on Earth Observations Biodiversity Observation Network (GEO BON), we identify 11 key workflow steps that will operationalize the process of building EBV data products within and across research infrastructures worldwide. These workflow steps take multiple sequential activities into account, including identification and aggregation of various raw data sources, data quality control, taxonomic name matching and statistical modelling of integrated data. We illustrate these steps with concrete examples from existing citizen science and professional monitoring projects, including eBird, the Tropical Ecology Assessment and Monitoring network, the Living Planet Index and the Baltic Sea zooplankton monitoring. The identified workflow steps are applicable to both terrestrial and aquatic systems and a broad range of spatial, temporal and taxonomic scales. They depend on clear, findable and accessible metadata, and we provide an overview of current data and metadata standards. Several challenges remain to be solved for building global EBV data products: (i) developing tools and models for combining heterogeneous, multi‐source data sets and filling data gaps in geographic, temporal and taxonomic coverage, (ii) integrating emerging methods and technologies for data collection such as citizen science, sensor networks, DNA‐based techniques and satellite remote sensing, (iii) solving major technical issues related to data product structure, data storage, execution of workflows and the production process/cycle as well as approaching technical interoperability among research infrastructures, (iv) allowing semantic interoperability by developing and adopting standards and tools for capturing consistent data and metadata, and (v) ensuring legal interoperability by endorsing open data or data that are free from restrictions on use, modification and sharing. Addressing these challenges is critical for biodiversity research and for assessing progress towards conservation policy targets and sustainable development goals.     

Parahellenia,a new genus segregated from Hellenia (Costaceae) based on phylogenetic and morphological evidence

Previous studies recognized three major lineages of the family Costaceae: a South American clade, an Asian clade and a Costus clade. However, the genus Hellenia within the Asian clade has been shown to be non-monophyletic and its morphology has not been studied carefully. Therefore, the complete plastid genomes of Hellenia species were obtained and the monophyly of Hellenia was tested through four different datasets in this study. Plastid phylogenomic analyses of Costaceae revealed that Hellenia is strongly supported as paraphyletic. Two major clades are recovered, namely the Hellenia s.s. subclade and the Parahellenia subclade. Phylogenetic analyses based on an enlarged taxon sampling of the Asian clade using a two chloroplast markers dataset (trnK intron and trnL-F spacer) confirmed the paraphyly of Hellenia. Meanwhile, morphological analyses suggested that members of the Parahellenia subclade differ from the remaining Hellenia species in many characters including inflorescences, bracts, stigma, axillary buds, floral tubes and labellum. According to the present molecular and morphological evidence, the latter subclade is recognized as a new genus, Parahellenia. Two new species are described, four new combinations are made, and identification keys are also provided.     

PSDS 2.0: 一个基于GIS和多个模型的生物潜在分布地预测系统

根据对生物分布地预测模型和软件发展现状的分析和总结, 本研究在PSDS 1.0的基础上提出并实现一个基于GIS且具有多个代表性模型的生物分布地预测系统(PSDS 2.0)。PSDS 2.0系统继承了1.0的环境包络和聚类包络模型, 进一步引入了限制因子包络、马氏距离、支持向量机等新模型, 并针对本领域中模型比较与选择的难点增加了迭代交叉验证的多模型选择功能。系统还实现了灵活定制和评估伪负样本的功能, 通过用只需要正样本的I类模型预测的结果对随机产生的伪负样本进行评估, 减小其落入适宜地区的概率, 进一步提高需要正负样本的II类模型的准确率。GIS功能在PSDS 2.0中也得到加强, 被应用于数据准备及结果分析等重要环节。文章最后以白冠长尾雉(Syrmaticus reevesii)为例, 运用PSDS 2.0系统预测其在中国范围内的潜在分布地, 并对各种模型的预测结果进行评估和比较。     

A new species of Proctoeces and reinstatement of Proctoeces humboldti George-Nascimento and Quiroga 1983 (Digenea: Fellodistomidae) based on molecular and morphological evidence

The most studied digenean of marine organisms in Chile is by far Proctoeces humboldti, a parasite of the intestine of the clingfish Sicyases sanguineus and gonad of the keyhole limpet Fissurella spp. (progenetic metacercariae). The mussel Perumytilus purpuratus has been suggested as the first intermediate host for this digenean. In a study examining the parasites of S. sanguineus from central Chile, we found specimens of Proctoeces showing significant morphological differences with P. humboldti. To assist in the resolution of the taxonomic identification of these specimens, as well sporocysts obtained from the mussel P. purpuratus from central and northern Chile, phylogenetic studies using DNA sequences from the SSU rRNA, as well the LSU rRNA and Cox 1 gene were performed. Results showed that the clingfish S. sanguineus is a host for two species of Proctoeces (P. humboldti and P. syciases n. sp.) along the northern and central Chilean coast, without geographic separation; the mussel P. purpuratus is the first intermediate host for P. syciases n. sp. but not for P. humboldti in central and northern Chile. Fissurellids (Archaeogastropoda) along the Chilean coast harbor only progenetic stages of P. humboldti, but there is no evidence of progenesis for P. syciases. The reinstatement of Proctoeces humboldti is strongly suggested.     

Spatial distribution and diversity of chironomid assemblages in a small hilly stream (Diptera: Chironomidae)

In 2006–2007, spatial variations of chironomid assemblages of a small chalky watercourse were investigated in the hilly region of Balaton Upland, Hungary. Samplings were carried out every three weeks at seven characteristically different sites along the whole length of the watercourse. Altogether 2966 specimens were collected and identified. The chironomid fauna of the stream was relatively rich with 40 taxa belonging to four subfamilies (eight Tanypodinae, one Prodiamesinae, 17 Orthocladiinae, 14 Chironominae). The lowest number of species and number of individuals was found at the spring, and the highest at the middle reach. Based on multivariate analysis the different sections of the creek were characterised by distinctive chironomid communities. Although longitudinal changes in the chironomid community of the Örvényesi creek were detectable due to changes in natural environmental factors, land-use changes also significantly influenced the chironomid community composition and diversity. The natural and anthropogenic effects were hardly distinguishable. Furthermore, we found that the response of different diversity indices to environmental variability was different. This draws attention to the difficulties in evaluating the relationships between stream communities and environmental variables using different diversity indices. The taxonomic diversity, which incorporates the taxonomical relationships between the specimens, proved to be one of the most useful diversity indices to characterise the stream chironomid assemblages.