Late Jurassic soft-bodied wood epibionts preserved by bioimmuration

While the encrustation of floating driftwood by pseudoplankton has attracted much debate, the utilization of benthic xylic substrata by sessile organisms has received scant attention. Here we record a benthic woodground fauna, including weakly mineralized and entirely soft-bodied taxa, which have been preserved within the cement of an overgrowing oyster. This process, bioimmuration, is ubiquitous in marine hard-substrate communities but is recorded here on a xylic substrate for the first time. Comparison of bioimmured communities will allow investigation of changes in woodground fauna through time and offers the potential for a fuller understanding of the effect of substrate texture on community composition.     

The Temporal Scaling of Bacterioplankton Composition: High Turnover and Predictability during Shrimp Cultivation

The spatial distribution of microbial communities has recently been reliably documented in the form of a distance–similarity decay relationship. In contrast, temporal scaling, the pattern defined by the microbial similarity–time relationships (STRs), has received far less attention. As a result, it is unclear whether the spatial and temporal variations of microbial communities share a similar power law. In this study, we applied the 454 pyrosequencing technique to investigate temporal scaling in patterns of bacterioplankton community dynamics during the process of shrimp culture. Our results showed that the similarities decreased significantly (P?=?0.002) with time during the period over which the bacterioplankton community was monitored, with a scaling exponent of w?=?0.400. However, the diversities did not change dramatically. The community dynamics followed a gradual process of succession relative to the parent communities, with greater similarities between samples from consecutive sampling points. In particular, the variations of the bacterial communities from different ponds shared similar successional trajectories, suggesting that bacterial temporal dynamics are predictable to a certain extent. Changes in bacterial community structure were significantly correlated with the combination of Chl a, TN, PO₄ ^3-, and the C/N ratio. In this study, we identified predictable patterns in the temporal dynamics of bacterioplankton community structure, demonstrating that the STR of the bacterial community mirrors the spatial distance–similarity decay model.     

Ecotone formation through ecological niche construction: the role of biodiversity and species interactions

Rapid changes in species composition, also known as ecotones, can result from various causes including rapid changes in environmental conditions, or physiological thresholds. The possibility that ecotones arise from ecological niche construction by ecosystem engineers has received little attention. In this study, we investigate how the diversity of ecosystem engineers, and their interactions, can give rise to ecotones. We build a spatially explicit dynamical model that couples a multispecies community and its abiotic environment. We use numerical simulations and analytical techniques to determine the biotic and abiotic conditions under which ecotone emergence is expected to occur, and the role of biodiversity therein. We show that the diversity of ecosystem engineers can lead to indirect interactions through the modification of their shared environment. These interactions, which can be either competitive or mutualistic, can lead to the emergence of discrete communities in space, separated by sharp ecotones where a high species turnover is observed. Considering biodiversity is thus critical when studying the influence of species–environment interactions on the emergence of ecotones. This is especially true for the wide range of species that have small to moderate effects on their environment. Our work highlights new mechanisms by which biodiversity loss could cause significant changes in spatial community patterns in changing environments.     

Open challenges for microbial network construction and analysis

Microbial network construction is a popular explorative data analysis technique in microbiome research. Although a large number of microbial network construction tools has been developed to date, there are several issues concerning the construction and interpretation of microbial networks that have received less attention. The purpose of this perspective is to draw attention to these underexplored challenges of microbial network construction and analysis.Subject terms: Microbiome, Microbial ecology     

Latitudinal and altitudinal patterns of soil nematode communities under tallow tree (Triadica sebifera) in China

Plant Ecology - Because nematodes are an important component of soil ecosystems, patterns of soil nematode community structure along geographic gradients have received considerable attention....     

Notonecta exhibit threat-sensitive,predator-induced dispersal

Dispersal is a central process determining community structure in heterogeneous landscapes, and species interactions within habitats may be a major determinant of dispersal. Although the effects of species interactions on dispersal within habitats have been well studied, how species interactions affect the movement of individuals between habitats in a landscape has received less attention. We conducted two experiments to assess the extent to which predation risk affects dispersal from an aquatic habitat by a flight-capable semi-aquatic insect (Notonecta undulata). Exposure to non-lethal (caged) fish fed conspecifics increased dispersal rates in N. undulata. Moreover, dispersal rate was positively correlated with the level of risk imposed by the fish; the greater the number of notonectids consumed by the caged fish, the greater the dispersal rate from the habitat. These results suggest that risk within a habitat can affect dispersal among habitats in a landscape and thus affect community structure on a much greater scale than the direct effect of predation itself.     

生态记忆及其在生态学中的潜在应用

生态记忆指群落过去的状态或经验影响其目前或未来生态响应的能力.作为研究生态系统结构和功能的一个新视角,生态记忆在群落演替、生态恢复、生物入侵和自然资源管理等多个领域中受到重视.本文在综述生态记忆的概念、组成、类别的基础上,进一步探讨了生态记忆的可能机制和影响因素,并指出了其潜在应用,以期为理解演替机理和指导生态恢复提供参考.     

Community,mobility and racism in a semi-rural area: Comparing minority experience in East Kent

Much research into community, racism and racialization has been conducted in metropolitan urban settings. It is only recently that race in rural areas has received some attention. A key theme of existing research on race in rural areas has focused on the issue of racial violence. Drawing on interviews with a variety of ethnic minority groups in East Kent the article will focus on broader issues of race and ethnicity in a semi-rural area. The study explores the meaning of race, ethnicity and belonging in the partially rural setting of East Kent, UK. The article will raise issues around the intersection of the regional and global, the problematic notion of “community”, and the fluidity of racialization in a setting in which many ethnic minorities were transitory and mobile. We conclude by highlighting the ways in which community, racism and racialization are embedded in differentiated discourses and processes.     

基于基因芯片对微生物基因功能与群落结构分析的硫化矿生物浸出分析

生物冶金技术因具有流程短、成本低、环境友好, 且特别适合处理低品位、复杂、难处理的矿产资源等优点,已经成为研究热点。然而由于缺少高效菌种以及不能对浸矿体系微生物进行定量分析, 难以对浸矿工艺参数和微生物种群进行优化调控, 从而导致硫化矿生物浸出速度慢、浸出率低。随着基因芯片、菌种保存技术的发展, 这些难题在逐一被解决。对近年来针对硫化矿浸出过程微生物的基因功能与群落结构分析的研究进行了概述, 将帮助我们更好地了解基因组学与生物冶金技术结合的重要作用。     

微藻固定CO2研究进展

空气中CO2浓度升高所导致的温室效应已成为重大的环境问题,受到人们普遍关注.概述了高效固定CO2微藻藻种的筛选和培养方法,分析了微藻固定CO2的无机碳利用形式和浓缩机制,讨论了高效光生物反应器设计和运行目标,简要介绍了微藻(酶)-膜生物反应器集成新技术.并认为今后的研究方向主要是在进一步探索微藻固定CO2有关机理的基础上,构建高效固定CO2的转基因微藻,开发高效膜生物反应集成系统.     

“Chronicity,” “Nervios,” and community care: A case study of Puerto Rican psychiatric patients in New York City

The role of ethnicity, community structure, and folk concepts of mental illness in facilitating the adaptation of long term psychiatric patients to community living has received little attention. This article examines the cultural concepts of mental illness and the community involvement of 30 Puerto Rican psychiatric patients participating in a New York City treatment program. It is shown that many of the attributes usually associated with chronic mental illness do not apply to this population. It is argued that the folk concept of nervios helps to foster the integration of these patients in a wide range of community networks. The impact of gentrification on these patients' community integration is also discussed.     

基于基因芯片对微生物基因功能与群落结构分析的硫化矿生物浸出分析

生物冶金技术因具有流程短、成本低、环境友好, 且特别适合处理低品位、复杂、难处理的矿产资源等优点,已经成为研究热点。然而由于缺少高效菌种以及不能对浸矿体系微生物进行定量分析, 难以对浸矿工艺参数和微生物种群进行优化调控, 从而导致硫化矿生物浸出速度慢、浸出率低。随着基因芯片、菌种保存技术的发展, 这些难题在逐一被解决。对近年来针对硫化矿浸出过程微生物的基因功能与群落结构分析的研究进行了概述, 将帮助我们更好地了解基因组学与生物冶金技术结合的重要作用。     

东湖通道工程对沿线底泥细菌群落结构和多样性的影响

为调查东湖通道工程对沿线底泥细菌群落结构和多样性可能造成的影响, 随着隧道施工的进程, 在东湖通道沿线的3个湖区中的19个采样点进行了3次采样, 通过PCR-DGGE结合分子克隆技术, 分析了细菌群落的群落结构及多样性。3批样品共检出细菌类群分别为5门18属、6门17属、5门11属。在门水平上, 底泥中的优势菌是变形菌门, 但其在总量中的比例随施工进程逐渐下降, 依次为86%、80.6%和43.9%。在属水平上, 施工初期的优势菌是埃希氏杆菌属, 施工后期却是Steroidobacter。通道施工初期, 汤菱湖、郭郑湖的湖心区域在属水平上的群落结构相似性较高, 与团湖差异显著; 接近施工区样点与远离施工区样点的底泥细菌群落存在显著差异; 因施工形成的临时封闭水域与敞水区除均有埃希氏杆菌属外, 其他菌属类群差异显著。施工后期的汤菱湖、郭郑湖及团湖的湖心区的底泥微生物群落结构趋于相似; 接近施工区样点与远离施工区样点的底泥细菌群落差异不显著; 封闭区和敞水区有相似的细菌群落结构。施工期间, 细菌群落的多样性指数的最高点都有出现在靠近施工区的位置。各批次样点的Simpson_1-D指数、Shannon_H指数、Margalef指数, 均随着施工进程而逐渐增加。因此, 东湖通道修建对通道沿线近距离的底泥细菌的群落结构和多样性产生了较显著的影响, 这种影响是暂时性还是持续性的, 尚需通道完工回填后的长期评估。研究将为进一步探讨通道修建等人为强干扰活动对浅水湖泊的可能环境影响和制定合理的生态修复策略提供理论基础和数据支撑。     

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

Succession is a widely studied process in plant and animal systems, but succession in microbial communities has received relatively little attention despite the ubiquity of microorganisms in natural habitats. One important microbial habitat is the phyllosphere, or leaf surface, which harbors large, diverse populations of bacteria and offers unique opportunities for the study of succession and temporal community assembly patterns. To explore bacterial community successional patterns, we sampled phyllosphere communities on cottonwood (Populus deltoides) trees multiple times across the growing season, from leaf emergence to leaf fall. Bacterial community composition was highly variable throughout the growing season; leaves sampled as little as a week apart were found to harbor significantly different communities, and the temporal variability on a given tree exceeded the variability in community composition between individual trees sampled on a given day. The bacterial communities clearly clustered into early-, mid-, and late-season clusters, with early- and late-season communities being more similar to each other than to the mid-season communities, and these patterns appeared consistent from year to year. Although we observed clear and predictable changes in bacterial community composition during the course of the growing season, changes in phyllosphere bacterial diversity were less predictable. We examined the species–time relationship, a measure of species turnover rate, and found that the relationship was fundamentally similar to that observed in plant and invertebrate communities, just on a shorter time scale. The temporal dynamics we observed suggest that although phyllosphere bacterial communities have high levels of phylogenetic diversity and rapid turnover rates, these communities follow predictable successional patterns from season to season.     

Prediction of organellar targeting signals.

The subcellular location of a protein is an important characteristic with functional implications, and hence the problem of predicting subcellular localization from the amino acid sequence has received a fair amount of attention from the bioinformatics community. This review attempts to summarize the present state of the art in the field.     

基于生态系统服务供需的景感尺度特征分析和应用

自然生态系统与人类感知的交互作用是景感生态学关注的焦点,与生态系统服务的供需紧密关联。生态系统、生态过程、生态系统服务以及人的需求均具有一定的时空尺度特征,因此,由这些过程产生的"景感"也具有时空尺度特征,并依赖于这个过程的尺度特征相互作用。梳理生态系统服务供需关系与景感营造规划的尺度特征,探索二者相互联系,进而提出基于景感生态学理论,通过景感营造实现生态系统服务供需平衡的多尺度实现路径。从空间维度,体现从"社区-城市-流域-区域"的多尺度景感规划框架,从应用维度,体现从生态系统服务需求探索-关键指标体系识别-多源谜码数据感知-景感营造与规划设计的具体流程。通过多尺度的联合景感营造,调整自然供给水平与人类不同尺度的生态系统服务需求以期达到平衡,从而实现人类生存环境福利与居民福祉提升的目标。在此基础上,结合雄安新区规划建设实例,从多尺度景感营造的角度为城市绿色生态建设与可持续发展提出优化建议。主要结论:(1)基于"社区-城市-流域-区域"的多尺度景感分析框架,将景感要素与生态系统服务供需思想融入城市规划,在不同尺度上趋善优化,对于实现可持续发展城市规划和管理具有重要指示意义;(2)雄安新...     

Empowering Place: Multilocality and Multivocality

The concept of "voice" has received considerable attention in anthropology recently. This article suggests that the concept of "place" requires a concomitant rethinking. It explores ways in which place, like voice and time, is a politicized social and cultural construct. It applies insights from geography and sociology to the anthropological study of place, drawing on research in Melanesia, including the author's fieldwork in Vanuatu. The article concludes that attention to multilocality as well as multivocality can empower place conceptually and encourage understanding of the complex social construction of spatial meaning.     

Current and Potential Roles of Soil Macroinvertebrates (Earthworms,Millipedes, and Isopods) in Ecological Restoration

Soil macroinvertebrates have a considerable impact on soil functions important to the restoration process, such as decomposition; yet, soil organisms have received relatively little attention in restoration ecology in terms of their applicability as agents of restoration. Here, we review how large obligate detritivores (earthworms, millipedes, and isopods) have been used to accomplish restoration goals, assess restoration progress, and function as bioindicators. Patterns of detritivore community succession and how these communities are themselves restored during restoration of perturbed ecosystems are also discussed. We conclude with a discussion of increased utilization of these taxa in future and ongoing restoration projects as well as the outreach activities that should be associated with use of these organisms.     

Human faecal microbiota display variable patterns of glycerol metabolism

Significant amounts of glycerol reach the colon microbiota daily through the diet and/or by in situ microbial production or release from desquamated epithelial cells. Some gut microorganisms may anaerobically reduce glycerol to 1,3-propanediol (1,3-PDO), with 3-hydroxypropanal as an intermediate. Accumulation of the latter intermediate may result in the formation of reuterin, which is known for its biological activity (e.g. antimicrobial properties). To date, glycerol metabolism in mixed cultures from the human colon has received little attention. Using in vitro batch incubations of faeces from 10 human individuals, we demonstrated that glycerol addition (140 mM) significantly affects the metabolism and composition of the microbial community. About a third of the samples exhibited rapid glycerol conversion, yielding proportionally higher levels of acetate and 1,3-PDO. In contrast, a slower glycerol metabolism resulted in higher levels of propionate. Furthermore, rapid glycerol metabolism correlated with significant shifts in the Lactobacillus-Enterococcus community, which were not observed in slower glycerol-metabolizing samples. As the conversion of glycerol to 1,3-PDO is a highly reducing process, we infer that the glycerol metabolism may act as an effective hydrogen sink. Given the importance of hydrogen-consuming processes in the gut, this work suggests that glycerol may have potential as a tool for modulating fermentation kinetics and profiles in the gastrointestinal tract.     

宏基因组学在人和动物胃肠道微生物研究中的应用进展

人和动物胃肠道存在大量微生物群落,这些微生物是与宿主长期共同进化的结果,并且同宿主的健康和疾病密切相关,因此胃肠道微生物研究已成为当今的热点研究领域。宏基因组学技术在这一领域的应用,使我们不仅能够对胃肠道微生物群落结构及多样性进行分析,还能进一步深入了解其代谢功能,开发和利用潜在的微生物及其基因资源。文中结合我们的研究工作,综述了宏基因组学在人和动物胃肠道微生物研究中的应用,同时着重介绍宏基因组研究的生物信息学技术。