Impact of fumigants on soil microbial communities.

Agricultural soils are typically fumigated to provide effective control of nematodes, soilborne pathogens, and weeds in preparation for planting of high-value cash crops. The ability of soil microbial communities to recover after treatment with fumigants was examined using culture-dependent (Biolog) and culture-independent (phospholipid fatty acid [PLFA] analysis and denaturing gradient gel electrophoresis [DGGE] of 16S ribosomal DNA [rDNA] fragments amplified directly from soil DNA) approaches. Changes in soil microbial community structure were examined in a microcosm experiment following the application of methyl bromide (MeBr), methyl isothiocyanate, 1,3-dichloropropene (1,3-D), and chloropicrin. Variations among Biolog fingerprints showed that the effect of MeBr on heterotrophic microbial activities was most severe in the first week and that thereafter the effects of MeBr and the other fumigants were expressed at much lower levels. The results of PLFA analysis demonstrated a community shift in all treatments to a community dominated by gram-positive bacterial biomass. Different 16S rDNA profiles from fumigated soils were quantified by analyzing the DGGE band patterns. The Shannon-Weaver index of diversity, H, was calculated for each fumigated soil sample. High diversity indices were maintained between the control soil and the fumigant-treated soils, except for MeBr (H decreased from 1.14 to 0.13). After 12 weeks of incubation, H increased to 0.73 in the MeBr-treated samples. Sequence analysis of clones generated from unique bands showed the presence of taxonomically unique clones that had emerged from the MeBr-treated samples and were dominated by clones closely related to Bacillus spp. and Heliothrix oregonensis. Variations in the data were much higher in the Biolog assay than in the PLFA and DGGE assays, suggesting a high sensitivity of PLFA analysis and DGGE in monitoring the effects of fumigants on soil community composition and structure. Our results indicate that MeBr has the greatest impact on soil microbial communities and that 1,3-D has the least impact.     

Effect of nutritional stress on control of Longidorus elongatus by nematicidal chemicals

Studies were made to determine the effect of starvation on the susceptibility of Longidorus elongatus to nematicidal chemicals. In vitro studies, using stylet protraction as a measure of susceptibility, showed that the EC₅₀ for nematodes exposed to oxamyl for 5 min was 6-5 μg cm^-3 for starved nematodes and 7-7 μg cm^-3 for well-fed specimens. In pot studies aldicarb and oxamyl, applied at half the normal commercial rates, decreased the numbers of starved, but not of well-fed, L. elongatus. In a field study aldicarb, oxamyl and the fungicide quintozene decreased the numbers of starving and well-fed L. elongatus. Oxamyl was more effective than aldicarb and the numbers of L. elongatus were decreased more in plots previously fallowed than in those cropped with a grass/clover mixture. A significant interaction between oxamyl treatment and initial crop was found. Starved L. elongatus appear to be more susceptible to carbamate nematicides than well-fed ones. Quintozene decreased numbers of L. elongatus more, and for a longer period of time, than either of the systemic nematicides. The mode-of-action of the nematicidal chemicals is discussed.     

The effect of fumigants on soil recolonization in the glasshouse by organisms colonizing the spermosphere

Germinating turnip seeds were used as baits to measure changes in colonizing floras of the spermosphere in glasshouse soil boxes following fumigation. The spermosphere mycoflora of the untreated soil was always dominated by Fusarium, Pythium, and Gliocladium spp. Methyl bromide, chloropicrin, and MBC₃₃ (a 67:33 mixture of methyl bromide and chloropicrin), applied in polyethylene bags at a rate of 2·5 ml/cubic foot of soil, greatly reduced colonization by Fusarium and Pythium spp. for 120 days. Fungi and actinomycetes recolonizing treated soils were more active than in untreated soils, and each fumigant induced a characteristic recolonization pattern. The spermosphere of methyl bromide-treated soil was initially dominated by actinomycetes and later by Penicillium spp. In chloropicrin-treated soil, Trichoderma and later Penicillium spp. dominated, and in soil treated with MBC ₃₃, Penicillium and Trichoderma spp. were co-dominant. Dilution plates, made at the same time from the same soil, indicated a close correlation between inoculum density of different fungi in the soil and their inoculum potentials towards the spermosphere.     

Effect of certain chemicals on soil fungistasis

Summary Fungistatic property of soil sample amended with certain chemicals has been studied. The fungistatic property was found to be highest in soil samples amended with potassium permanganate and copper sulphate. The remaining chemicals also caused different levels of fungistasis. Thus presence of various chemicals in the microbial products seems to be the possible cause of soil fungistasis.     

Insecticidal and nematicidal properties of microbial metabolites

Summary Metabolites from 942 microbial isolates were screened for insecticidal and nematicidal properties. The isolates included 302 streptomycetes, 502 novel actinomycetes including representatives of 18 genera, 28 unidentified aerobic actinomycetes, 70 fungi and 40 bacteria other than actinomycetes. When diluted 10-fold, the metabolites from 55 isolates caused nearly 100% mortality in mosquito larvae (Aedes aegypti) within 24 h. These isolates included 27 isolates ofStreptomyces, four ofActinoplanes, three isolates each ofActinomadura andStreptoverticillium, two isolates each ofMicromonospora, Bacillus andPaecilomyces, and one isolate each ofMicropolyspora, Nocardiopsis, Streptosporangium, Oerskovia, Thermomonospora, Chainia, Pseudomonas, Fusarium, Monilia andSyncephalestrum. Two fungal isolates could not be identified to the generie level. Extracts from the culture broth of 18 isolates caused 100% mortality in mosquito larvae within 15 min to 24 h at a concentration of 1000 ppm. The LC₅₀ of partially purified products from two isolates was 1–2.5 ppm and that of the semipurified preparations from four other isolates was 50 ppm. Valinomycin was identified as an active component in the culture broth from one isolate. The culture broth from 15 isolates of aerobic actinomycetes and 4 of fungi were toxic toPanagrellus redivivus (Nematoda); these included 12 isolates with selective nematicidal properties.Michigan Agriculture Experiment Station, Journal Article No. 12321.     

Behavior of fresh vs. aged chemicals in soil

Existing data indicate that chemicals freshly added to soils are more amenable to losses, including biodegradation, than chemicals that have been in contact with soils for extended periods of time. This review presents the results of studies that indicate that increased soil‐chemical contact time increased the resistance of chemicals to desorption, volatilization, biodegradation, and extraction. Thus, results from studies conducted on chemicals freshly added to soils should not be used to predict the behavior of chemicals that have been in contact with soils for extended periods of time. In addition, a measure of the total chemical concentration present in a soil does not adequately indicate the availability of the chemicals for biodegradation or release, and does not indicate the potential for the chemical to be transported to and have an adverse effect on a human or ecological receptor.     

The use of thin soil sections for the study of soil micro-organisms

Summary Modifications of Alexander and Jackson's¹ technique for the preparation of thin soil sections are described.The distribution of bacterial colonies within soil aggregates has been examined using this technique and it has been demonstrated that distinct distribution patterns may occur.     

The combined use of self-organizing maps and Andrews' Curves

The use of self-organizing maps to analyze data often depends on finding effective methods to visualize the SOM's structure. In this paper we propose a new way to perform that visualization using a variant of Andrews' Curves. Also we show that the interaction between these two methods allows us to find sub-clusters within identified clusters. Perhaps more importantly, using the SOM to pre-process data by identifying gross features enables us to use Andrews' Curves on data sets which would have previously been too large for the methodology. Finally we show how a three way interaction between the human user and these two methods can be a valuable exploratory data analysis tool.     

The use of bacteria as probes for lectins in preparations of solubilized human tonsil cell membranes

In earlier work we have shown that some bacteria bind naturally to lymphocyte subpopulations and that this binding may be due to lectin-carbohydrate interactions. Here we determined the possibility of using bacteria to probe for these lectins in solubilized tonsil cell membrane preparations. Since lectins are capable of agglutination, we determined the ability of human tonsil cell membrane extract (TCME) to agglutinate bacteria. We used Escherichia coli strain YS57 which does not bind to human lymphocytes and a mutant strain derived from it, E. coli UI 2023, which binds to about 50 percent of human lymphocytes. The UI 2023 was agglutinated while the YS57 was not; this agglutination was not due to antibodies or DNA. When E. coli UI 2023 was treated with periodate, it lost its ability to be agglutinated. The agglutination of E. coli UI 2023 was not blocked by any of the monosaccharides and disaccharides used but was blocked by the E. coli LPS, more specifically, by its carbohydrate moiety. Also, the E. coli UI 2023 absorbed the agglutinating factor while its parental strain, YS57, did not. Sodium dodecylsulfate-polyacrylamide gel electrophoresis of TCME after absorption with bacteria showed that a band around 67kD was absent in the TCME absorbed by E. coli prevented the absorption by E. coli UI 2023 whereas Na2IO4-treated LPS did not. In addition, tonsil cell membrane was radioiodinated before obtaining the TCME; sodium dodecylsulfate-polyacrylamide gel electrophoresis of the radioiodinated TCME recovered after elution from E. coli UI 2023, but not from E. coli YS57, showed again a band around 67 kD.(ABSTRACT TRUNCATED AT 250 WORDS)     

An assay procedure for solubilized thyroid hormone receptor: use of Lipidex

A method using Lipidex-1000 is reported for the assay of thyroid hormone receptor activity. The receptor was extracted from rat liver nuclei, incubated with [125I]T3, and applied to 1-ml disposable pipet tip columns containing a small volume of Lipidex. The resin absorbed the free hormone, and the receptor-bound hormone was recovered in the eluate. The method allowed accurate assay of the receptor activity, satisfying a linear relationship between the activity and the receptor protein concentration. The usefulness of this method was demonstrated by determining the pH optimum and the Kd and Bmax of T3 binding by the receptor. The Lipidex column can be used for the preparation of an unoccupied receptor after dissociation of the endogenously bound hormone.     

The use of soil biofilms for observing protozoan movement and feeding

Protozoan movement and feeding regimes in soil biofilms were observed with inverted microscopes and Utermohl plankton counting chambers (4 mm deep). In a new use for these counting chambers, the three-dimensional appearance of a soil pore network can be simulated using long working distance objectives (40x). Protozoa were often associated with soil surfaces and penetrated soil crevices of less than 3 microm in diameter by either distorting their body outlines or with slender pseudopodia of less than 2 microm at the tips. Many ciliates repeatedly collided with soil particles and released attached bacteria into the soil solution for subsequent predation.     

The use of in vitro systems to assess cancer mechanisms and the carcinogenic potential of chemicals

Carcinogenesis is a highly complex, multi-stage process that can occur over a relatively long period before its clinical manifestation. While the sequence in which a cancer cell acquires the necessary traits for tumour formation can vary, there are a number of mechanisms that are common to most, if not all, cancers across the spectrum of possible causes. Many aspects of carcinogenesis can be modelled in vitro. This has led to the development of a number of mechanistically driven, cell-based assays to assess the pro-carcinogenic and anti-carcinogenic potential of chemicals. A review is presented of the current in vitro models that can be used to study carcinogenesis, with examples of cigarette smoke testing in some of these models, in order to illustrate their potential applications. We present an overview of the assays used in regulatory genotoxicity testing, as well as those designed to model other aspects that are considered to be hallmarks of cancer. The latter assays are described with a view to demonstrating the recent advances in these areas, to a point where they should now be considered for inclusion in an overall testing strategy for chemical carcinogens.     

Loss of organic chemicals in soil: Pure compound treatability studies

Comprehensive screening data on the treatability of 32 organic chemicals in soil were developed. Of the evaluated chemicals, 22 were phenolic compounds. Aerobic batch laboratory microcosm experiments were conducted using two soils: an acidic clay soil with <1% organic matter and a slightly basic sandy loam soil containing 3.25% organic matter. Loss rates were determined for the 32 chemicals with each soil and were higher in the basic soil. The loss rates were compared with chemical structure. Chlorophenols with chlorine substituted in the meta‐position had greater half‐lives and lower loss rates. Chemicals with a nitro group substituted in the phenol ring appeared to have a lower loss rate.     

植物-微生物联合修复毒死蜱污染的土壤

本试验以毒死蜱污染土壤为研究材料,利用降解菌DSP-A分别与高丹草、紫花苜蓿、多花黑麦草进行联合修复,探讨了植物-微生物联合修复毒死蜱污染土壤的效果,以及影响联合修复的因素,结果表明,植物．微生物联合修复的效果优于单一的植物修复及单一的微生物修复效果。与DSP—A菌群较合适的植物是高丹草,该组合对毒死蜱的降解率达到96．44％,其次是多花黑麦草。研究了微生物数量、植株密度以及土壤湿度对联合修复效果的影响,结果表明,DSP．A菌菌液稀释倍数越大,联合修复的效果越差。植株密度对联合修复的影响,主要表现为对植物根系生长的影响。植株密度越大,对生存环境的竞争越激烈,植物根系的生长越不好。除了紫花苜蓿外,高丹草和多花黑麦草根系的生长均受到影响。高丹草种植密度为12株／盆时,与DSP—A菌的联合修复效果最好,多花黑麦草则为10株／盆。土壤湿度是影响联合修复的重要因素,不仅影响植物的生长,对微生物的生长也有影响。土壤湿度过大,造成土壤的含氧量降低,不利于植物根系和好氧细菌的生长,从而影响土壤中农药的降解。土壤湿度过小,容易造成植株缺水,根系生长和微生物的生长。高丹草与DSP．A菌、多花黑麦草与DSP—A菌联合修复最适浇水量都为20mL／d,紫花苜蓿与DSP—A菌联合修复最适浇水量都为15mL／d。