Morphological differences in the skin of marble trout Salmo marmoratus and of brown trout Salmo trutta

Despite being genetically very closely related, the marble trout Salmo marmoratus and the brown trout Salmo trutta exhibit marked phenotypic differences, particularly with regard to skin pigmentation. Histological analysis of skin from the head and gill cover of differently aged individuals of the two species was carried out in order to characterize differences in skin structure. The basic structure of skin of the individuals studied corresponded with that described for other salmonids, though the head epidermis was somewhat thicker in S. marmoratus than in S. trutta, thickening with age in both species. Numerous secretory goblet cells and sporadic secretory sacciform cells were observed in the upper and middle part of the epidermis in both species. Melanophores were present in both species only in the dermis, and were bigger in S. marmoratus and present at lower average density than in S. trutta, and more or less constant across all age classes. In adult S. marmoratus with fully established marble pigmentation, light areas at low density with small (i.e. aggregated) melanophores were present, while in S. trutta melanophores were more uniformly distributed.     

Vertical distribution and substrate preference of brown trout in a littoral zone

Synopsis We studied vertical distribution, substrate preference and food choice of brown trout, Salmo trutta, from benthic gillnet catches at four littoral sampling locations in a Norwegian hydroelectric reservoir. The sampling locations had different bottom substrates; at one location the bottom substrate consisted of sand, while at the other three, substrates consisted of stones ranging 2–5 cm, 10–30 cm and 30–150 cm in diameter, respectively. Small-sized (< 160 cm) and intermediate-size (164–269 mm) brown trout were mainly caught close to the bottom (0–0.5 m above). Small-sized brown trout were caught in the highest frequency at the location with substrate consisting of 10–30 cm large stones. Intermediate-sized brown trout were also caught in highest frequency at this location, but were also caught in a high frequency at the location with sandy substrate. In contrast, the catches of large-sized ( 270 mm) brown trout did not vary with distance from the bottom or with substrate coarseness. The most important food items for the brown trout were aquatic insects, surface insects, Eurycercus lamellatus and crustacean zooplankton, mainly Daphnia longispina, Bythotrephes longimanus, and Holopedium gibberum. In accordance with the differences in vertical distribution, benthic food was more important to small than to large brown trout. We argue that small brown trout stayed close to the bottom to reduce aggressive behaviour from larger specimens, and that small brown trout were therefore more dependent on benthic food items. We also argue that the observed differences in substrate preference between the size groups of brown trout is explained by variation in access to shelter, visual isolation between individuals and benthic feeding conditions between locations.     

Fine-scale phylogeographic contact zone in Austrian brown trout Salmo trutta reveals multiple waves of post-glacial colonization and a pre-dominance of natural versus anthropogenic admixture

Two major mtDNA lineages of brown trout come into contact in the upper Danube basin of Central Europe. The region is additionally confronted with stock management programs that often use domesticated foreign strains creating confusion as to what constitutes native and non-native populations as well as how to define major management units. In a unique system in north eastern Austria we provide additional support that the so-called Atlantic lineage of brown trout is native to the upper Danube and provide a high resolution microsatellite screening protocol that clearly distinguishes between natural and anthropogenic introgression, with the latter being minimal. Sequencing of 6,000 bp of mtDNA also shows that domesticated stocks primarily stem from a distinct albeit genetically diverse sub-clade of the Atlantic lineage, approximately 50,000–100,000 years divergent from the native Atlantic stocks, thought to have expanded into the region during the Holocene. The futility in defining large-scale management units based on mtDNA lineages for such broadly distributed and highly fragmented species is discussed.     

Microsatellite and mitochondrial DNA polymorphism reveals life-history dependent interbreeding between hatchery and wild brown trout (Salmo trutta L.)

The effects of stocking hatchery trout into wild populations were studied in a Danish river, using microsatellite and mitochondrial DNA (mtDNA) markers. Baseline samples were taken from hatchery trout and wild trout assumed to be unaffected by previous stocking. Also, samples were taken from resident and sea trout from a stocked section of the river. Genetic differentiation between the hatchery strain and the local wild population was modest (microsatellite FST = 0.06). Using assignment tests, more than 90% of individuals from the baseline samples were classified correctly. Assignment tests involving samples from the stocked river section suggested that the contribution by hatchery trout was low among sea trout (< 7%), but high (46%) among resident trout. Hybrid index analysis and a high percentage of mtDNA haplotypes specific to indigenous trout observed among resident trout that were assigned to the hatchery strain suggested that interbreeding took place between hatchery and wild trout. The latter result also indicated that male hatchery trout contributed more to interbreeding than females. We suggest that stronger selection acts against stocked hatchery trout that become anadromous compared to hatchery trout that become resident. As most resident trout are males this could also explain why gene flow from hatchery to wild trout appeared to be male biased. The results show that even despite modest differentiation at neutral loci domesticated trout may still perform worse than local populations and it is important to be aware of differential survival and reproductive success both between life-history types and between sexes.     

Genomic consequences of a recent three‐way admixture in supplemented wild brown trout populations revealed by local ancestry tracts

Understanding the evolutionary consequences of human‐mediated introductions of domesticated strains into the wild and their subsequent admixture with natural populations is of major concern in conservation biology. However, the genomic impacts of stocking from distinct sources (locally derived vs. divergent) on the genetic integrity of wild populations remain poorly understood. We designed an approach based on estimating local ancestry along individual chromosomes to provide a detailed picture of genomic admixture in supplemented populations. We used this approach to document admixture consequences in the brown trout Salmo trutta, for which decades of stocking practices have profoundly impacted the genetic make‐up of wild populations. In southern France, small local Mediterranean populations have been subject to successive introductions of domestic strains derived from the Atlantic and Mediterranean lineages. To address the impact of stocking, we evaluate the extent of admixture from both domestic strains within populations, using 75,684 mapped SNPs obtained from double‐digested restriction site‐associated DNA sequencing. Then, the chromosomal ancestry profiles of admixed individuals reveal a wider diversity of hybrid and introgressed genotypes than estimated using classical methods for inferring ancestry and hybrid pedigrees. In addition, the length distribution of introgressed tracts retained different timings of introgression between the two domestic strains. We finally reveal opposite consequences of admixture on the level of polymorphism of the recipient populations between domestic strains. Our study illustrates the potential of using the information contained in the genomic mosaic of ancestry tracts in combination with classical methods based on allele frequencies for analysing multiple‐way admixture with population genomic data.     

Secondary contact between Lycaeides idas and L. melissa in the Rocky Mountains: extensive admixture and a patchy hybrid zone

Studies of hybridization have increased our understanding of the nature of species boundaries, the process of speciation, and the effects of hybridization on the evolution of populations and species. In the present study we use genetic and morphological data to determine the outcome and consequences of secondary contact and hybridization between the butterfly species Lycaeides idas and L. melissa in the Rocky Mountains. Admixture proportions estimated from structure and geographical cline analysis indicate L. idas and L. melissa have hybridized extensively in the Rocky Mountains and that reproductive isolation was insufficient to prevent introgression for much of the genome. Geographical patterns of admixture suggest that hybridization between L. idas and L. melissa has led to the formation of a hybrid zone. The hybrid zone is relatively wide, given estimates of dispersal for Lycaeides butterflies, and does not show strong evidence of cline concordance among characters. We believe the structure of the Lycaeides hybrid zone might be best explained by the patchy distribution of Lycaeides, local extinction and colonization of habitat patches, environmental variation and weak overall selection against hybrids. We found no evidence that hybridization in the Rocky Mountains has resulted in the formation of independent hybrid species, in contrast to the outcome of hybridization between L. idas and L. melissa in the Sierra Nevada. Finally, our results suggest that differences in male morphology between L. idas and L. melissa might contribute to isolation, or perhaps even that selection has favoured the spread of L. melissa male genitalia alleles.     

Movement and mortality of stocked brown trout in a stream

The movement and mortality of stocked brown trout Salmo trutta were investigated using radio telemetry. Four brown trout left the study area whereas the remaining fish were stationary. After 5 weeks, 13 out of 50 tagged brown trout were still alive in the stream. Surviving fish had a significantly lower mean movement per day than fish, which later either died or disappeared. This difference in behaviour was most pronounced 2 to 8 days after release. Predation by the otter Lutra lutra was probably the main cause of the observed mortality.     

Variation in mitochondrial DNA and post-glacial colonization of north western Europe by brown trout

A purified mitochondrial DNA (mtDNA) probe was used to examine restriction fragment length polymorphisms produced by six restriction enzymes ( Xba I, Eco RV, Ava II, Hinf I, Hae III, Mbo I) in 915 brown trout from western Europe. A total of 20 composite haplotypes were found with one to seven haplotypes in individual populations. Icelandic trout samples from north, south, east, and west coast drainages showed only a single common haplotype in contrast to the high level of polymorphism found in Irish and Scottish populations. The phylogeny of mtDNA haplotypes and the pattern of haplotype distribution suggests that post-glacial colonization of brown trout in NW Europe was more complex than the dual colonization model which has been proposed on the basis of differential LDH-5* allele distribution. For example, Lough Melvin (Ireland) appears to have been independently     

Evidence for selective angling of introduced trout and their hybrids in a stocked brown trout population

Comparisons of the genetic composition of brown trout Salmo trutta captured by anglers and by electrofishing based on three diagnostic microsatellite loci provided strong evidence that angling is selective in a stocked brown trout population. At two sites, anglers caught significantly younger trout and proportionally more introduced hatchery trout and hybrids than were observed in electrofishing surveys. Selective angling, in combination with a small legal catch size, may have considerably eliminated introduced trout and hybrids before spawning at the study sites, and thus may have reduced the introgression of alien genes into the local gene pool. Angling can be an important factor influencing the genetic structure of fish populations and should be taken into account in studies of introgressive hybridization in stocked fish populations and their management. In this study, demographic consequences of stocking were not assessed. Thus, even though the genetic consequences of stocking may be minimal or largely reversible through angling, resource competition between native and introduced trout, until they reach legal catch size, is expected to have a negative effect on the productivity of the indigenous trout population.     

High mortality in introduced brown trout depressed potential gene flow to a wild population

Hatchery reared 0+ year brown trout Salmo trutta , with 51 mm mean L _T, were released in a sea trout stream in June 1991 to compare the survival of wild and introduced trout during the freshwater stage from age 0+ to 2+ years. The introduced brown trout were homozygous for a genetic marker, enabling released individuals and their offspring to be distinguished phenotypically from the local sea trout. The mean size of 0+ and 1+ year introduced parr was larger than 0+ and 1+ year wild parr, while 2+ year parr of both groups were of the same size. Half year survival rates of both introduced and wild parr increased with size up to c . 80 mm (1+ years), but then decreased, and could be described by a polynomial regression function, with the same shape for both groups. The introduced parr had, however, a significant lower survival rate than the wild parr. The number of the introduced cohort decreased from 2200 at release in 1991 to c . 20 in March 1994 ( c . 1% of the original number). Between 1994 and 2000 no introduced individuals or offspring have been observed in the study area. High mortality at the parr stage and additional mortality until the spawning, give a low probability for a genetic impact on the local population as long as releases are restricted, both in time and number of fish.     

藏鸡微卫星文库的构建与微卫星标记筛选

通过磁珠富集法构建了藏鸡基因组微卫星富集文库,分离微卫星序列并对其进行分析.将藏鸡基因组DNA经Sau3AI酶切后纯化回收,连接特定接头.用生物素标记的(CA)12探针与藏鸡基因组酶切回收片段杂交,捕获200～900 bp片段,随后将获得的片段连接到pMD 18-T载体上,转化至JM109中,成功构建藏鸡微卫星富集文库.从1200个转化子中获得了353个阳性克隆,随机挑选53个测序,根据测序结果成功设计了18对藏鸡微卫星引物,最终筛选出6个具有多态性的微卫星标记,其PIC值均大于0.5,同时可以用于研究藏鸡遗传多样性.实验结果表明磁珠富集法能够有效提高分离微卫星标记的效率.     

Genetic and phenotypic population divergence on a microgeographic scale in brown trout

Salmonid populations of many rivers are rapidly declining. One possible explanation is that habitat fragmentation increases genetic drift and reduces the populations' potential to adapt to changing environmental conditions. We measured the genetic and eco-morphological diversity of brown trout (Salmo trutta) in a Swiss stream system, using multivariate statistics and Bayesian clustering. We found large genetic and phenotypic variation within only 40 km of stream length. Eighty-eight percent of all pairwise F(ST) comparisons and 50% of the population comparisons in body shape were significant. High success rates of population assignment tests confirmed the distinctiveness of populations in both genotype and phenotype. Spatial analysis revealed that divergence increased with waterway distance, the number of weirs, and stretches of poor habitat between sampling locations, but effects of isolation-by-distance and habitat fragmentation could not be fully disentangled. Stocking intensity varied between streams but did not appear to erode genetic diversity within populations. A lack of association between phenotypic and genetic divergence points to a role of local adaptation or phenotypically plastic responses to habitat heterogeneity. Indeed, body shape could be largely explained by topographic stream slope, and variation in overall phenotype matched the flow regimes of the respective habitats.     

Combining green LiDAR bathymetry,aerial images and telemetry data to derive mesoscale habitat characteristics for European grayling and brown trout in a Norwegian river

Hydrobiologia - While many studies provide microscale relationships between fish and habitat&nbsp;characteristics, studies covering longer river reaches are scarce. Modern remote sensing...     

High Ag-NOR-site variation associated to a secondary contact in brown trout from the Iberian Peninsula

The analysis of nucleolar organizer regions (NORs) using silver (Ag-) staining and in situ hybridization (ISH) in brown trout (Salmo trutta) from various river basins in the Iberian Peninsula revealed high variation in the number and location of NORs. A total of 17 different Ag-NOR sites were revealed in 10 different chromosome pairs. Three different Ag-NOR patterns clustered by river basins and strongly associated to the internal transcribed spacer 1 (ITS1) variation were detected. The main variability in NOR-sites was found in a secondary contact between two divergent lineages of brown trouts at Duero basin. Our results confirmed the abrupt break in the spatial distribution of genetic variation of brown trout populations previously reported at Duero basin. We hypothesize that NOR-site variation might be a consequence of hybridization between divergent lineages of brown trouts and that NORs could play a major role in the maintenance of a hybrid zone in Duero basin via post-zygotic isolation mechanisms.     

Clinal variation in a brown lemur (Eulemur spp.) hybrid zone: Combining morphological,genetic and climatic data to examine stability

Studies of hybrid zones can inform our understanding of reproductive isolation and speciation. Two species of brown lemur (Eulemur rufifrons and E. cinereiceps) form an apparently stable hybrid zone in the Andringitra region of south‐eastern Madagascar. The aim of this study was to identify factors that contribute to this stability. We sampled animals at 11 sites along a 90‐km transect through the hybrid zone and examined variation in 26 microsatellites, the D‐loop region of mitochondrial DNA, six pelage and nine morphological traits; we also included samples collected in more distant allopatric sites. Clines in these traits were noncoincident, and there was no increase in either inbreeding coefficients or linkage disequilibrium at the centre of the zone. These results could suggest that the hybrid zone is maintained by weak selection against hybrids, conforming to either the tension zone or geographical selection‐gradient model. However, a closer examination of clines in pelage and microsatellites indicates that these clines are not sigmoid or stepped in shape but instead plateau at their centre. Sites within the hybrid zone also occur in a distinct habitat, characterized by greater seasonality in precipitation and lower seasonality in temperature. Together, these findings suggest that the hybrid zone may follow the bounded superiority model, with exogenous selection favouring hybrids within the transitional zone. These findings are noteworthy, as examples supporting the bounded superiority model are rare and may indicate a process of ecologically driven speciation without geographical isolation.     

Prey consumption rates and growth of piscivorous brown trout in a subarctic watercourse

Prey consumption rates of piscivorous brown trout Salmo trutta were studied in the Pasvik watercourse, which forms the border between Norway and Russia. Estimates of food consumption in the field were similar to or slightly less than maximum values from a bioenergetic model. The piscivore diet consisted mainly of vendace Coregonus albula with a smaller number of whitefish Coregonus lavaretus . Individual brown trout had an estimated mean daily intake of c . 1·5 vendace and 0·4 whitefish, and a rapid annual growth increment of 7–8 cm year⁻¹. The total population of brown trout >25 cm total length was estimated as 8445 individuals (0·6 individuals ha⁻¹), giving a mean ±  s . e . annual consumption of 1553880 ± 405360 vendace and 439140 ± 287130 whitefish for the whole watercourse. The rapid growth in summer of brown trout >25 cm indicated a high prey consumption rate.     

Movement and home range in relation to dominance; a telemetry study on brown trout Salmo trutta

By combining behavioural observations on adult resident brown trout Salmo trutta in the laboratory with radio telemetry studies in a natural stream, information on movement and space use in relation to social status was obtained. Dominant individuals moved longer distances and also tended to have larger home ranges than subordinates during the summer. In general, home ranges were larger during daytime than at night. Fish were not strictly territorial since the average overlap in interquartile range was 36% during the summer. During the spawning period, the brown trout moved to specific spawning areas resulting in an increased overlap (89%) in space use. Subordinate individuals now tended to increase both home range and interquartile range and were also less frequently observed in spawning areas relative to dominants.     

Chromosomal evolution in salmonids: a comparison of Atlantic salmon, brown trout, and rainbow trout R-band chromosomes

Replication banding technique was applied to the chromosomes of Salmo salar, Salmo trutta, and Oncorhynchus mykiss. The in vitro technique has proved more advantageous than the in vivo technique due to a higher number of bands obtained. The comparison of these replication banding patterns has revealed that some chromosomes of Salmo trutta karyotype appeared associated with Salmo salar and Oncorhynchus mykiss karyotypes by single chromosomal rearrangements.     

Cortisol and glucose responses in juvenile brown trout subjected to a fluctuating flow regime in an artificial stream

In an artificial stream channel, wild 1 year old brown trout Salmo trutta were exposed to fluctuations in flow and water level to simulate hydro-peaking conditions downstream of a hydropower installation. Blood plasma cortisol concentrations reached a maximum of 59·4 ± 35·3 ng ml⁻¹ (mean ± 95% CL) 2h after the end of down-ramping. Return to the pre-exposure cortisol level was achieved within 6 h. When subjected to daily cyclical fluctuations over 7 days, plasma cortisol levels were significantly elevated (61·3 ± 26·8 ng ml⁻¹) on the first day compared to undisturbed fish (4·9 ± 3·7 ng ml⁻¹). On the fourth and seventh day, no elevation in plasma cortisol above control levels was observed. No changes in blood glucose that could be attributed to the stressor were found. There was no correlation between plasma cortisol and blood glucose levels. The short-lived cortisol response to daily fluctuations indicates a rapid habituation to this Stressor.