Dominance of a <Emphasis Type="Italic">Rhizopogon</Emphasis> sister species corresponds to forest age structure

Rhizopogon vesiculosus and Rhizopogon vinicolor are sister species of ectomycorrhizal fungi that associate exclusively with Douglas-fir (DF). They form tuberculate mycorrhizas and they can be easily distinguished using molecular tools. We are not aware of studies relating their relative abundance in forests with different age classes. Our objective was to determine whether a change in the number or relative abundance of R. vesiculosus and R. vinicolor tubercules and genotypes was related to a change in the percent of DF in a regenerating phase (<50 years old). R. vesiculosus and R. vinicolor were located by excavating tuberculate mycorrhizas from the forest floor. A DNA Alu1 digest was used to distinguish between the two species. Microsatellite markers were used to identify genotypes. The number of R. vesiculosus tubercules correlated positively with an increasing proportion of DF in a regenerating phase, while the number of R. vinicolor tubercules was similar across all forest age structures. The number of R. vesiculosus genotypes did not correlate with forest age structure, whereas the number of R. vinicolor genotypes showed a negative relationship with an increasing proportion of DF in a regenerating phase. When the numbers of R. vesiculosus tubercules and genotypes were expressed as a relative abundance of the two species, there was a positive correlation with an increasing proportion of DF in a regenerating phase for both genotypes and tubercules. Our results suggest that the degree of DF regeneration or ecosystem factors related to DF regeneration affect the population dynamics of R. vesiculosus and R. vinicolor differently.     

Comparison of biomass allocation in ectomycorrhizal and nonmycorrhizal Douglas fir seedlings of similar nutrition and overall size

Biomass allocation in 6-month-old ectomycorrhizal Douglas fir seedlings was compared to that in nonmycorrhizal seedlings of the same age, nutrient status and total biomass. Seedlings colonized by Rhizopogon vinicolor had the same distribution of biomass between roots, stems and needles, but only 56% of the total length of roots (including mycorrhizal branches) compared to nonmycorrhizal seedlings. Laccaria laccata had no effect on distribution of biomass or root length of seedlings. The results for Rhizopogon provide direct evidence that the process of ectomycorrhizal colonization can significantly affect plant biomass allocation by one or more mechanisms not directly related to altered nutrition or overall plant size.     

Response patterns of net photosynthesis to moisture of mosses in xeric habitats

The response patterns of net photosynthesis to moisture level of mosses in xeric habitats were compared with those in mesic habitats, in order to determine whether the former species are better adapted to the xeric condition with regard to carbon gain. Moss species examined wereRhacomitrium lanuginosum andR. barbuloides in xeric open habitats andDicranum japonicum, Hypnum plicatulum, Ptilium crista-castrensis, Pleurozium schreberi andHylocomium splendens in mesic habitats on the coniferous forest floor in the upper subalpine zone of Mt. Fuji. Three additional xerophytic species collected at other localities,Ptychomitrium polyphylloides, Grimmia pilifera andHedwigia ciliata, were also examined. Five species in the xeric habitats showed an optimum range of moisture level for net photosynthesis, 2 to 3g·g⁻¹. On the other hand, species in the forest showed a wider optimum range, 3 to 8g·g⁻¹. Net photosynthetic rate at the moisture level of 0.5g·g⁻¹ was positive in xerophytic mosses, but negative in most forest mosses. Moisture levels where external capillary water disappeared and drop of water potential began was determined by blotting water-saturated shoots with membrane filters. These moisture levels were low in the xerophytic mosses and high in the forest mosses, although there were some exceptions. It was concluded that mosses in xeric habitats are better adapted for the efficient use of water for photosynthesis than those in mesic habitats.     

Abiotic determinants of the fynbos/succulent karoo boundary,South Africa

This study investigates the influence of texture, soil moisture and nutrient status on the growth and survival of seedlings of two typical fynbos (Leucadendron pubescens and Passerina vulgaris) and succulent karoo (Ruschia spp.) species, which grow in the boundary zone between these two vegetation types. Seedlings of each species were grown in shalederived and sandstone‐derived soils and under xeric and mesic regimes. Under the xeric regime, the shale‐derived and sandstone‐derived soils represented fine and coarse‐textured soils, respectively. Under the mesic regime, the same soils represented nutrient‐rich and nutrient‐poor soils, respectively. The seedlings of both fynbos species died rapidly under the xeric regime, irrespective of soil type. In contrast, the succulent karoo seedlings survived for over 77 days without water. Under mesic conditions, the fynbos seedlings grew faster than the succulent karoo seedlings, irrespective of soil type. Fynbos seedlings appear to be directly limited by the environment (moisture and salinity), whereas succulent karoo seedlings may be limited by interactions with other plants.     

Bacterial communities associated with tuberculate ectomycorrhizae of Rhizopogon spp.

We have previously reported the design of a new PCR primer pair that allows amplification of a broad range of eubacterial 16S rDNA sequences from ectomycorrhizae (ECM) without co-amplification of plastid or mitochondrial sequences. Here, we report using a similar primer combination to generate three small 16S rDNA libraries from tuberculate ECM of Rhizopogon spp., two from R. vinicolor ECM (libraries Rvi18 and Rvi24) and one from R. vesiculosus ECM (library Rve13). At the class level, libraries were dominated by sequences from the Alphaproteobacteria, Gammaproteobacteria, and Acidobacteria, with some Sphingobacteria, Actinobacteria, Planctomycetacia, and Verrucomicrobiae present as well. Based on the parsimony test implemented in TreeClimber, libraries Rvi18 and Rvi24 were significantly different from Rve13 at the α = 0.05 level, while they were only borderline significantly different from each other (p = 0.07). Differences between Rvi and Rve libraries were primarily due to differences in the number of Alphaproteobacteria sequences and specifically sequences from the Rhizobiales, which were more common in the Rve13 library. It is currently unknown what drives these differences between eubacterial communities. Amplification success for eubacterial 16S rDNA sequences was generally low in this study indicating low abundance of bacteria on tuberculate ECM. Attempts to amplify nitrogenase reductase (nifH) sequences were unsuccessful. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Above- and Belowground Net Primary Production in a Temperate Mixed Deciduous Forest

Our current ability to detect and predict changes in forest ecosystem productivity is constrained by several limitations. These include a poor understanding of belowground productivity, the short duration of most analyses, and a need for greater examination of species- or community-specific variability in productivity studies. We quantified aboveground net primary productivity (ANPP) over 3 years (1999–2001), and both belowground NPP (BNPP) and total NPP over 2 years (2000–2001) in both mesic and xeric site community types of the mixed mesophytic forest of southeastern Kentucky to examine landscape variability in productivity and its relation with soil resource [water and nitrogen (N)] availability. Across sites, ANPP was significantly correlated with N availability (R² = 0.58, P = 0.028) while BNPP was best predicted by soil moisture content (R² = 0.72, P = 0.008). Because of these offsetting patterns, total NPP was unrelated to either soil resource. Interannual variability in growing season precipitation during the study resulted in a 50% decline in mesic site litter production, possibly due to a lag effect following a moderate drought year in 1999. As a result, ANPP in mesic sites declined 27% in 2000 compared to 1999, while xeric sites had no aboveground production differences related to precipitation variability. If global climate change produces more frequent occurrences of drought, then the response of mesic sites to prolonged moisture deficiency and the consequences of shifting carbon (C) allocation on C storage will become important questions.     

Cultivation of mushrooms of edible ectomycorrhizal fungi associated with Pinus densiflora by in vitro mycorrhizal synthesis

Edible mushroom fungi in the genera Lyophyllum, Tricholoma, Leucopaxillus, Suillus, Rhizopogon, Lactarius, and Morchella were tested for mycorrhization with Pinus densiflora in vitro. Most of the tested fungi in the genera Lyophyllum, Tricholoma, Suillus, Rhizopogon, and Lactarius formed ectomycorrhizas 2–4 months after fungal inoculation. Mycorrhizal seedlings were then acclimatized in open-pot soil under growth-chamber conditions. Almost all mycorrhizal seedlings sustained their symbiont and developed new mycorrhizas for 8–9 months after transplantation. Under these conditions, more than half of the tested species formed primordia and Tricholoma flavovirens, Rhizopogon rubescens, and Lactarius akahatsu developed basidiocarps with young host plants. Accepted: 28 November 2000     

The effects of heat treatments on ectomycorrhizal resistant propagules and their ability to colonize bioassay seedlings

The effect of disturbance on the resistant propagule community (RPC) of ectomycorrhizal fungi has been given relatively little attention. In this study we investigate the effects of heat, one important factor of fire disturbances, on the ability of ectomycorrhizal RPC fungi to colonize Pinus jeffreyi seedlings in greenhouse bioassays. Prior to planting the seed, soils were collected from an old growth mixed-conifer forest in the southern Sierra Nevada, California, USA and then subjected to four heat treatments of none, 45 °C, 60 °C, and 75 °C. After eight months, seedlings were harvested and the ectomycorrhizal fungi colonizing the roots were characterized by molecular methods (PCR-RFLP and DNA sequencing). Rhizopogon species increased in dominance on seedlings grown in soils receiving the 75 °C heat treatment. One species significantly increased in frequency, Rhizopogon olivaceotinctus, and two species (Cenococcum geophilum and Wilcoxina sp.) significantly decreased in frequency in the 75 °C treatment. The increase of R. olivaceotinctus, coupled with other features of its behavior, suggests that substantial heat disturbances may benefit this species in competing for roots.     

Drought response of five conifer species under contrasting water availability suggests high vulnerability of Norway spruce and European larch

The ability of tree species to cope with anticipated decrease in water availability is still poorly understood. We evaluated the potential of Norway spruce, Scots pine, European larch, black pine, and Douglas‐fir to withstand drought in a drier future climate by analyzing their past growth and physiological responses at a xeric and a mesic site in Central Europe using dendroecological methods. Earlywood, latewood, and total ring width, as well as the δ¹³C and δ¹⁸O in early‐ and latewood were measured and statistically related to a multiscalar soil water deficit index from 1961 to 2009. At the xeric site, δ¹³C values of all species were strongly linked to water deficits that lasted longer than 11 months, indicating a long‐term cumulative effect on the carbon pool. Trees at the xeric site were particularly sensitive to soil water recharge in the preceding autumn and early spring. The native species European larch and Norway spruce, growing close to their dry distribution limit at the xeric site, were found to be the most vulnerable species to soil water deficits. At the mesic site, summer water availability was critical for all species, whereas water availability prior to the growing season was less important. Trees at the mesic were more vulnerable to water deficits of shorter duration than the xeric site. We conclude that if summers become drier, trees growing on mesic sites will undergo significant growth reductions, whereas at their dry distribution limit in the Alps, tree growth of the highly sensitive spruce and larch may collapse, likely inducing dieback and compromising the provision of ecosystem services. However, the magnitude of these changes will be mediated strongly by soil water recharge in winter and thus water availability at the beginning of the growing season.     

Phenotypic plasticity of desiccation resistance in Glossina puparia: are there ecotype constraints on acclimation responses?

Phenotypic plasticity allows organisms to cope with environmental variation and may aid in the evolution of novel traits. However, whether phenotypic plasticity is beneficial, or if acclimation responses might be constrained to particular ecotypes is generally poorly explored. Here we test the beneficial acclimation hypothesis (BAH) and its alternatives for desiccation resistance to atmospheric moisture in mesic‐ and xeric‐adapted Glossina species. Highly significant interactions among acclimation and test humidity were detected for water loss rates indicative of significant phenotypic plasticity. Ordered‐factor anova was unable to reject predictions of the ‘drier is better’ acclimation hypothesis in xeric Glossina morsitans and mesic G. austeni. Evidence for the ‘deleterious acclimation hypothesis’ was found for mesic G. palpalis as expected from the moist habitats it typically occupies. By contrast, support for the ‘optimal acclimation hypothesis’ was found in xeric G. pallidipes. Little support for BAH was obtained in the present study, although other hypotheses, which might enhance fitness within the environments these species are typically exposed to, were supported. However, acclimation responses were not necessarily constrained to xeric/mesic ecotypes which might be expected if adaptation to a particular environment arose as a trade‐off between plastic responses and living in a particular habitat. These results highlight the complexity of acclimation responses and suggest an important role for phenotypic plasticity in moderating environmental effects on evolutionary fitness in Glossina.     

Forest/environment relationships in Yosemite National Park,California, USA

Forest compositional patterns in Yosemite National Park, California, were related to environmental factors through numerical classification of forest types, arrangement of forest types along elevational and topographic gradients, and development of regression models relating basal area of common tree species to environmental variables. The eight forest types are differentiated primarily by elevation zone and secondarily by topographic setting. Lower montane forests (1200–1900 m) were divided into the Abies concolor/Calocedrus type occurring primarily on mesic sites and the Pinus ponderosa/Calocedrus type predominantly on xeric sites. Upper montane forests (1900–2500 m) included the Abies concolor/Abies magnifica type on mesic sites, the Abies magnifica/Pinus type on somewhat more xeric sites, and Juniperus occidentalis/Pinus jeffreyi woodlands on granitic domes. Subalpine forests (2500–3300 m) embraced three types: Tsuga mertensiana/Pinus forests on mesic sites, monotypic Pinus contorta forests on drier sites, and Pinus albicaulis/Pinus contorta groves at treeline. Regression models consistently included elevation and soil magnesium content as explanatory variables of species basal area totals. The two Abies spp. were negatively correlated with soil magnesium levels, whereas other montane species (e.g. Calocedrus decurrens, Pinus lambertiana, and Pinus ponderosa) exhibited positive correlation with soil magnesium. Topography and soil physical properties were only infrequently incorporated into species regression models.Abbreviations DBH= diameter at breast height (1.4 m) - DCA= detrended correspondence analysis - TWINSPAN= two-way indicator species analysis     

Complex vegetation responses to soil disturbances in mountain grassland

We studied vegetation responses to disturbances originated by ants and voles in subalpine grasslands in the Eastern Pyrenees. We compared the effects of these small-scale disturbances with those of a large-scale disturbance caused by ploughing. We wanted to know if these soil disturbances promoted species richness through the existence of a specific guild of plants colonizing these areas, and if this guild was the same for all soil disturbances, independently of their extent. In general, grassland vegetation seemed to recover relatively quickly from soil-displacement disturbances, and the effects could be scaled up in time and space in terms of species richness and composition. Vole mound composition was similar to that in the surrounding grassland, suggesting that mounds were rapidly colonized by the neighbouring vegetation. Vegetation composition differed between the grassland and the ant mounds. Grasses and erect dicots coped well with repeated disturbance, while rosette-forming species and sedges were very sensitive to it. Landscape processes could be important to understanding recolonization. Species from xeric grasslands were found in mesic grasslands when disturbed by ploughing and on the tops of active ant mounds. Furrows in mesic grasslands recovered well, but decades after disturbance showed long persistence of some xeric species and increased species richness compared to terraces, while xeric grasslands showed decreased richness. This suggests that, because of those disturbances, within-habitat diversity was increased, although landscape diversity was not. However, specific disturbances showed idiosyncratic effects, which could enhance the species richness globally. In ant-affected areas, the grassland itself showed the highest plant species richness, partially associated to the presence of some species with elaiosomes not, or only rarely, found in adjacent grasslands without ant mounds. Therefore, soil disturbances occurring at different spatial scales contributed to complexity in vegetation patterns in addition to abiotic factors and grazing. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Nomenclature of the species follows Tutin et al. (1964–1980) and Bolòs et al. (1993).     

Phenology constrains opportunistic growth response in <Emphasis Type="Italic">Bromus tectorum</Emphasis> L.

Seasonal resource availability may act as a constraint on plant phenology and thereby influence the range of growth responses observed among populations of annual species, especially those occupying a wide range of environments. We compared a mesic and a xeric population of the non-native, annual grass, Bromus tectorum, to examine phenology in response to interspecific competition and water availability. Using a target-neighborhood approach, we assessed how phenological patterns of the two populations affected morphological and growth responses to enhanced resource availability represented by late-season soil moisture. The xeric population exhibited a highly constrained phenology and was unable to extend the growing season despite available soil resources. Because of the low phenotypic variation, allocation to reproduction was similar across resource conditions. In contrast, the mesic population flowered later and showed a more opportunistic phenology in response to late-season water availability. The mesic population was not able to maintain consistent reproductive allocation at low resource levels. The responses of the two populations to late-season water availability were not affected by the density of neighboring plants. We suggest that post-introduction selection pressure on B. tectorum in the xeric habitat has resulted in a more fixed phenology which limits opportunistic response to unpredictable, particularly late-season resource availability. Opportunistic and fixed responses represent contrasting strategies for optimizing fitness in temporally varying environments and, while both play important roles for ensuring reproductive success, these results suggest that local adaptation to temporal resource variation may reflect a balance between flexible and inflexible phenology.     

Mycobiont overlap between two mycoheterotrophic genera of Monotropoideae (Pterospora andromedea and Sarcodes sanguinea) found in the Greater Yellowstone Ecosystem

Pterospora andromedea, a mycoheterotroph, has been shown to form obligate symbioses with only three species of Rhizopogon in section Amylopogon: R. salebrosus, R. arctostaphyli and an undescribed molecular taxon. Sarcodes sanguinea, another my coheterotroph in Ericaceae, and sister taxon to Pterospora andromedea, has been found to form symbioses with two species of Rhizopogon in section Amylopogon: R. ellenae and R. subpurpurascens. To date no overlap has been recorded between these two achlorophyllous plants and their associated mycobionts. Tissue from Pterospora andromedea rootballs and Rhizopogon spp. basidiocarps were collected from the Greater Yellowstone Ecosystem. The mycobionts were identified using sequence analysis of the ITS locus and compared with sequences of Rhizopogon spp. section Amylopogon from GenBank. Sequences of two additional loci, ATP6 and RPB2 were also generated and analyzed. In addition to Rhizopogon salebrosus, Pterospora andromedea was found for the first time in association with a fourth mycobiont, Rhizopogon ellenae, a known associate of Sarcodes sanguinea. The discovery of a new symbiont may provide evidence for an undiscovered lineage of Pterospora andromedea inhabiting the Greater Yellowstone Ecosystem. In addition, overlap in obligate mycobionts between closely related mycoheterotrophs provides interesting new information on the phylogenetic history and coevolution of the mycoheterotrophs in the Monotropoideae (Ericaceae).     

Seedling growth strategies and seed size effects in fourteen oak species native to different soil moisture habitats

 Seedling growth and morphology are thought to reflect evolutionary responses to habitat or influences of seed size. To test these hypotheses, we selected fourteen species of North American oaks differing in soil moisture habitat preference and seed size. Seedlings were grown for 1 – 2 years with abundant soil water and moderate soil nutrition in pots placed outdoors and in a common garden. Oak species native to xeric environments produced the smallest seedlings. Oaks from hydric soils had more shoot weight per unit of root weight and more height per unit of total plant weight than did mesic or xeric oaks. Essentially no differences in leaf area per unit of total plant weight were detected. Species with thinner and larger individual leaves tended to produce larger seedlings. Within species, seed size was generally unrelated to seedling growth, although results may have been complicated by uncontrolled genotypic variability. However, when species were compared, those with larger mean seed size produced larger seedlings. Root/shoot allometry, height growth and leaf thickness in the tested species may reflect evolutionary responses to soil moisture and flooding. Although seed size influenced seedling growth, no clear relationship between seed size and soil moisture habitat was found. Received: 26 March 1995 / Accepted: 30 November 1995     

Traceability of Marketable Japanese Shoro in New Zealand: Using Multiplex PCR To Exploit Phylogeographic Variation among Taxa in the Rhizopogon Subgenus Roseoli

Rhizopogon roseolus Corda (synonym Rhizopogon rubescens Tul.), an economically important edible mushroom associated with the Pinaceae (mostly Pinus sp.), has a global distribution resulting from the introduction of exotic trees into the Southern Hemisphere for plantation forestry. However, the marketability of R. roseolus varies with the place of origin. R. roseolus strains cultivated in New Zealand from local carpophores for the Japanese market are morphologically and biologically distinct from those produced in Japan and are consequently considered less valuable. In this study, the ITS1-5.8S-ITS2 rRNA (internal transcribed spacer [ITS]) region was used to examine the phylogenetic relationships of R. roseolus and other closely related fungi belonging to Rhizopogon subgenus Roseoli to determine the genetic basis for phenotypic differences among R. roseolus isolates from different geographic regions. Phylogenetic comparison revealed phylogeographic variation within Rhizopogon subgenus Roseoli. Collections from the United States and Europe grouped into four distinct clades. Rhizopogon roseolus isolates found in New Zealand were closely related to those from the United States, likely due to introduction of Pinus radiata from its native California in the United States. In contrast, Japanese R. roseolus isolates clustered closely with European collections. Phylogenetic differences between Japanese and New Zealand R. roseolus isolates may explain the morphological and biological properties attributed to these geographical variants. The ITS region was subsequently used to design a multiplex PCR for the simultaneous identification of Japanese and New Zealand R. roseolus isolates to track the establishment of ectomycorrhiza on P. radiata seedlings inoculated with commercially valuable R. roseolus. This diagnostic demonstrated the first fruiting of Japanese shoro cultivated on P. radiata in the Southern Hemisphere.Since the latter half of the 19th century, Northern Hemisphere species of exotic trees, in particular Pinus radiata, have been planted in the Southern Hemisphere (e.g., Chile, Argentina, South Africa, Australia, and New Zealand). Indeed, over 1,000,000 ha of exotic trees have been established in New Zealand alone (32, 9). Over 200 nonnative basidiomycete and ascomycete ectomycorrhizal (ECM) fungal species are associated with Pinus or Eucalyptus plantations in the Southern Hemisphere from the introduction of plants with intact root systems (46).The genus Rhizopogon Fries (Basidiomycota, Boletales) contains more than 100 species of hypogeous fungi (24), which form ECM associations mostly with members of the Pinaceae (44). The greatest diversity of Rhizopogon can be found in the coniferous forests of the Pacific northwestern United States (40, 30), although a number of species are known to occur in Europe (40) and Asia (3). At least four introduced species of Rhizopogon have also been reported in New Zealand, including R. clelandii Cunn., R. luteolus Fr., R. roseolus (7), and R. vinicolor A. H. Smith (5). At least two species, R. luteolus and R. roseolus, have been associated with P. radiata seedlings in forest nurseries in the North Island of New Zealand (6).In Japan, R. roseolus is known locally as shoro. Shoro is considered a delicacy (20), and its production is dependent on the collection of the carpophores in the field. In fact, only 200 years ago, shoro was the fourth most commonly consumed mushroom in Japan (34). However, the number of natural shoro has declined in the second half of the 20th century (15), resulting in its cultivation in forestry plantations since the late 1980s (50). To fulfill Japanese demand, plantations of P. radiata artificially inoculated with R. roseolus have been established in New Zealand since 1999 using spores from fruiting bodies collected locally (47). Three of the four plantations have subsequently produced fruiting bodies, but the crop has been deemed unsuitable due to consumer sensitivity in Japan to the origin of the products and doubts surrounding the authenticity of the fruiting bodies as Japanese shoro. The quality and market price of other edible fungi differ not only with species but also with their origin. In Japan, domestic Tricholoma matsutake is considered the premium source of matsutake, traded at $500/kg, while South Korean matsutake and those from China are considered less valuable ($250/kg and $100/kg, respectively) (31). Highly prized edible fungi have also been found to be contaminated with less valuable species. Tuber rufum Pico is a truffle species that is found alongside other valuable species in countries where truffles are commercially important. However, it is considered to be a poorly flavored species with no marketable value and is deemed a “contaminant” in truffières (4).Unfortunately, the taxonomy of the genus Rhizopogon is surrounded by many unresolved issues, which makes differentiation of shoro-like fungi found in different geographical locations difficult. In 1966, Smith and Zeller (40) completed the first taxonomic study of the genus Rhizopogon, dividing it into two subgenera, Rhizopogonella (subsequently transferred to Alpova [45]) and Rhizopogon. The subgenus Rhizopogon was further divided into four sections based on differences in the host plant, sporocarp morphology, and color of the peridium. All species associated with Pinus spp. were classified in Rhizopogon section Rhizopogon. Rhizopogon roseolus and R. rubescens were placed in subsection Angustispori, stirps Rubescens. A third species, Rhizopogon vulgaris Vittad., was placed in subsection Angustispori, stirps Vulgaris, due to differences in its spore morphology.Similarities between species in stirps Rubescens and stirps Vulgaris were recorded, with stirps Vulgaris considered a continuation of stirps Rubescens into the narrow-spore species. However, classification was based only on examinations of North American collections even though these species were originally described in Europe in the 19th century (40). Taxonomic reexamination of Rhizopogon using phylogenetic analyses of internal transcribed spacer (ITS) DNA sequences showed that Rhizopogon burlinghamii, R. roseolus, and R. vulgaris formed Rhizopogon section Rhizopogon clade C, separate from the other species sampled from section Rhizopogon (clades A and B). Their ITS sequences lacked insertions and deletions that are diagnostic of other section Rhizopogon clades. Rhizopogon roseolus and R. vulgaris were placed together under Rhizopogon subgenus Roseoli (13). Unfortunately, collections classified as R. rubescens were not included in the phylogenetic study. More recently, species concepts in the R. roseolus species group were examined by Martín and García (25). ITS sequence analyses separated the collections into five possible phylogenetic species.The continued taxonomic instability of Rhizopogon subgenus Roseoli has created ongoing confusion, and the correct species names are still not clear. In Japan, until now, shoro has been referred to as R. rubescens; however, R. rubescens is used widely as a synonym for R. roseolus. In this study, R. roseolus will be used to describe all collections unless specifically stated, as this taxonomic name appears to have precedence in previous phylogenetic studies of Rhizopogon (13, 19, 40) and since Mycobank (http://www.MycoBank.org/) considers R. rubescens to be a synonym of R. roseolus.Molecular diagnostic tools capable of distinguishing genetic differences in ECM fungi have been developed, allowing the differentiation of commercially important species from contaminants or similar species of less economic value. There are many studies where PCR primers designed for the amplification of the ITS region have been used to identify basidiomycetes (12, 18). Species-specific primers were created to identify and differentiate marketable boletes (28), to detect black truffle species (37), and to distinguish Asiatic black truffles from Tuber melanosporum in commercialized products (22). A multiplex PCR has also been developed to simultaneously detect different white truffle species and one of the most aggressive contaminant fungi for monitoring the persistence of a selected truffle in inoculated seedlings (1).Due to the sensitivity of consumers to the origins of shoro and the existing taxonomic complexity of the genus Rhizopogon, morphological and molecular methods were used to establish the diversity and genetic structure of Rhizopogon subgenus Roseoli. Phylogenetic relationships between shoro-like species (originally classified as R. vulgaris, R. rubescens, and R. roseolus) from different geographical locations were investigated to verify previously observed differences between shoro grown in Japan and New Zealand. A multiplex PCR was then developed for the rapid identification of ECMs and fruiting bodies grown from Japanese shoro in New Zealand to track the commercial production of this economically valuable edible fungus.     

Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China

Alkaline-saline soil is widespread in arid and semiarid regions of the world and causes severe environmental and agricultural problems. To advance our understanding of the adaptation of ectomycorrhizal fungi (EMF) to alkaline-saline soil, we investigated EMF communities on Mongolian willow (Salix linearistipularis) growing in alkaline-saline soil (up to pH 9.2) in northeastern China. In total, 75 root samples were collected from 25 willow individuals over 4.7 ha. To identify fungal species in ectomycorrhizal root tips, we used terminal restriction fragment length polymorphism and sequencing analyses of the internal transcribed spacer region of ribosomal DNA. We detected 11 EMF species, including species of Inocybe, Hebeloma, and Tomentella of the Basidiomycota and three Ascomycota species. The EMF richness of the study site was estimated to be 15–17 using major estimators. The most abundant species was Geopora sp. 1, while no Geopora-dominated EMF communities have been reported so far. Phylogenetic analysis showed that the phylogroup including Geopora sp. 1 has been found mostly in alkaline soil habitats, indicating its adaptation to high soil pH. Because EMF are indispensable for host plant growth, the EMF species detected in this study may be useful for restoration of alkaline-saline areas.     

Response of nitrogen cycling to simulated climate change: differential responses along a subalpine ecotone

In situ nitrogen (N) transformations and N availability were examined over a four‐year period in two soil microclimates (xeric and mesic) under a climate‐warming treatment in a subalpine meadow/sagebrush scrub ecotone. Experimental plots that spanned the two soil microclimates were exposed to an in situ infrared (IR) climate change manipulation at the Rocky Mountain Biological Laboratory, near Crested Butte, Colorado. Although the two microclimates did not differ significantly in their rates of N transformations in the absence of heating, they differed significantly in their response to increased IR. Under a simulated warming in the sagebrush‐dominated xeric microclimate, gross N mineralization rates doubled and immobilization rates increased by up to 60% over the first 2 years of the study but declined to predisturbance rates by the fourth year. This temporal pattern of gross mineralization rates correlated with a decline in SOM. Concurrently, rates of net mineralization rates in the heated plots were 60% higher than the controls after the first year. There were no differences in gross or net nitrification rates with heating in the xeric soils. In contrast to the xeric microclimate, there were no significant effects of heating on any N transformation rates in the mesic microclimate. The differing responses in N cycling rates of the two microclimate to the increased IR is most certainly the result of differences in initial soil moisture conditions and vegetation type and cover.     

Nitrate reductase activity of nonmycorrhizal Douglas-fir rootlets and of some associated mycorrhizal fungi

Douglas-fir root tips reduced nitrate at much higher rates than seven mycorrhizal fungi, which also differed between species in rate of nitrate reduction. Results are related to nitrogen nutrition of Douglas-fir.Excised, nonmycorrhizal root tips of Douglas-fir reduced nitrate at much higher rates than seven mycorrhizal fungi commonly associated with Douglas-fir. The fungi differed significantly in degree of activity:Cenococcum geophilum, Piloderma bicolor, andRhizopogon vinicolor were highest;Amanita muscaria was intermediate; andHebeloma crustuliniforme, Thelephora terrestris, andLaccaria laccata were lowest.     

Dendrochronological analysis of white oak growth patterns across a topographic moisture gradient in southern Ohio

Moisture availability is a key factor that influences white oak (Quercus alba L.) growth and wood production. In unglaciated eastern North America, available soil moisture varies greatly along topographic and edaphic gradients. This study was aimed at determining the effects of soil moisture variability and macroclimate on white oak growth in mixed-oak forests of southern Ohio. Using accurately dated and measured tree rings, we analyzed 119 white oaks growing across an integrated moisture index (IMI), a computer-generated GIS model that simultaneously combines topographic and edaphic features into a moisture index scale. Growth trends varied considerably across the IMI, with trees in mesic sites exhibiting patterns much different from those in either xeric or intermediate sites. BAI growth and biomass increments were higher for trees growing in the intermediate and mesic sites than those from the xeric sites. Correlation and response function analyses, and redundancy analysis revealed significant relations between ring-width indices and climate, with current year May–July PDSI, precipitation and temperature as the most important correlates of white oak growth. Additionally, climatic influences on growth rate were variable across the IMI; trees in xeric sites showed much greater coefficients relative to those from the intermediate and mesic sites. Despite these differences, xeric and intermediate trees exhibited similar growth patterns. The present results provide further evidence of the usefulness of the IMI for identifying and comparing white oak growth patterns across the complex, dissected landscape of southern Ohio.