Inhibition studies of soybean (Glycine max) urease with heavy metals,sodium salts of mineral acids,boric acid,and boronic acids

Various inhibitors were tested for their inhibitory effects on soybean urease. The K_i values for boric acid, 4-bromophenylboronic acid, butylboronic acid, and phenylboronic acid were 0.20?±?0.05?mM, 0.22?±?0.04?mM, 1.50?±?0.10?mM, and 2.00?±?0.11?mM, respectively. The inhibition was competitive type with boric acid and boronic acids. Heavy metal ions including Ag⁺, Hg²⁺, and Cu²⁺ showed strong inhibition on soybean urease, with the silver ion being a potent inhibitor (IC₅₀ = 2.3?×?10^?8 mM). Time-dependent inhibition studies exhibited biphasic kinetics with all heavy metal ions. Furthermore, inhibition studies with sodium salts of mineral acids (NaF, NaCl, NaNO₃, and Na₂SO₄) showed that only F^? inhibited soybean urease significantly (IC₅₀ = 2.9?mM). Competitive type of inhibition was observed for this anion with a K_i value of 1.30?mM.     

Oxidation of a methionine residue in subtilisin-type proteinases by the hydrogen peroxide/borate system — an active site-directed reaction

Subtilisin-type proteinases (thermitase, subtilisin Carlsberg, alkaline proteinase ZIMET 10911, proteinase K) are partially inactivated by hydrogen peroxide in the alkaline pH range only in the presence of boric acid or phenylboronic acid. A model is presented to describe the inactivation mechanism. Both boric acid and perboric acid existing in equilibrium in the presence of hydrogen peroxide bind competitively at the active site of the enzyme. The inactivation, which is known to be caused by sulfoxide formation from the methionine residue in the active site (Stauffer C.E. and Etson D. (1969) J. Biol. Chem. 244, 5333–5338), is due to the enzyme-bound perboric acid species. The dissociation constants for the boric acid-thermitase and perboric acid-thermitase complexes are 36 ± 7 and 4 ± 1 mM, respectively. The first-order rate constant of inactivation is k = 0.63 ± 0.14 min⁻¹. The same mechanism of inactivation holds true for phenylboronic acid in alkaline hydrogen peroxide solutions.     

Oxidation of a methionine residue in subtilisin-type proteinases by the hydrogen peroxide/borate system--an active site-directed reaction

Subtilisin-type proteinases (thermitase, subtilisin Carlsberg, alkaline proteinase ZIMET 10911, proteinase K) are partially inactivated by hydrogen peroxide in the alkaline pH range only in the presence of boric acid or phenylboronic acid. A model is presented to describe the inactivation mechanism. Both boric acid and perboric acid existing in equilibrium in the presence of hydrogen peroxide bind competitively at the active site of the enzyme. The inactivation, which is known to be caused by sulfoxide formation from the methionine residue in the active site (Stauffer, C.E. and Etson, D. (1969) J. Biol. Chem. 244, 5333-5338), is due to the enzyme-bound perboric acid species. The dissociation constants for the boric acid-thermitase and perboric acid-thermitase complexes are 36 +/- 7 and 4 +/- 1 mM, respectively. The first-order rate constant of inactivation is k = 0.63 +/- 0.14 min-1. The same mechanism of inactivation holds true for phenylboronic acid in alkaline hydrogen peroxide solutions.     

The investigation of recognition interaction between phenylboronate monolayer and glycated hemoglobin using surface plasmon resonance

Glycated hemoglobin (HbA1c) is formed by a nonenzymatic reaction of glucose with the N-terminal valine of adult hemoglobin's beta-chain. The amount of HbA1c reflects the average concentration of glucose variation level over the preceding 2 to 3 months. Because the boronate has antibody mimicking for HbA1c, often it is used to detect HbA1c. However, factors such as the ratio of the phenylboronic acid derivatives and diol composition, the pH of the solution, and the stereostructure of phenylboronic acid derivatives could influence the interactions between phenylboronic acid derivatives and diol composition. In this study, the factors were evaluated using surface plasmon resonance (SPR). The results show that pH value is an important factor affecting HbA1c and phenylboronic acid to form the complex and Lewis bases. This could change the stereostructure of phenylboronic acid to form B(OH)(3) for binding with saccharine easily. In addition, linear response appeared in HbA1c in the range of 0.43 to 3.49 mug/ml, and the detection limit was 0.01 microg/ml. The results also demonstrated that an SPR biosensor can be used as a sensitive technique for improving the accuracy and correctness of HbA1c measurement.     

Reactions of the 4a-hydroperoxide of liver microsomal flavin-containing monooxygenase with nucleophilic and electrophilic substrates

Liver microsomal flavin-containing monooxygenase (MFMO) has been shown to exhibit a stable 4a-flavin hydroperoxide intermediate in the absence of oxygenatable substrate (Poulsen, L. L., and Ziegler, D. M. (1979) J. Biol. Chem. 254, 6449-6455; Beaty, N. B., and Ballou, D. P. (1981) J. Biol. Chem. 256, 4619-4625). The reaction of this intermediate with an assortment of substrates was studied by stopped flow techniques. The first observed spectral change is a small blue shift in the absorbance peak of the 4a-flavin intermediate. The rate of this spectral change is dependent on the concentration of the substrate. This small spectral change is succeeded by a large increase in the absorbance at 450 nm. The rate of appearance of oxidized flavin is independent of substrate concentration but does increase at higher pH. Steady state turnover rates also greater at higher pH, consistent with earlier observations that the formation of oxidized flavin is rate determining in catalysis. Upon oxygenation by MFMO, thiobenzamide and iodide each undergo a spectral change which is dependent on substrate concentration. The spectral changes corresponding to oxygenation of these substrates occur at the same rates as do the initial small spectral changes contributed by the flavin chromophore as observed with all substrates. However, no substrate tested to date shows any effect on the rate of formation of oxidized flavin. Previous work has shown MFMO to catalyze the oxygenation of a variety of nitrogen- and sulfur-containing hydrophobic compounds. Two new classes of compounds are shown here to be substrates for this enzyme. The nucleophilic anions, iodide and thiocyanate, catalyze the decomposition of the 4a-flavin hydroperoxide. Organic boronic acids (e.g. phenylboronic acid and butylboronic acid) also appear to be oxygenated with no striking differences in kinetic characteristics from those of nucleophilic substrates. These organic boronic acids are classic electrophiles and suggest that like peracids, the 4a-flavin hydroperoxide is capable of oxygenating both nucleophiles and electrophiles (Lee, J. B., and Uff, B. C. (1967) Quart. Rev. 21, 429-457).     

Phenylboronic acid is a more potent inhibitor than boric acid of key signaling networks involved in cancer cell migration

Previous studies from our lab have shown that both boric (BA) and phenylboronic acid (PBA) inhibit the migration of prostate cancer cell lines, as well as non-tumorigenic prostate cells. Our results indicate that PBA is more potent than BA in targeting metastatic and proliferative properties of cancer cells. Here we focus on the impact of BA and PBA on Rho family of GTP-binding proteins and their downstream targets. Treatment with 1 mM PBA and BA decreases activities of RhoA, Rac1 and Cdc42 in DU-145 metastatic prostate cancer cells, but not in normal RWPE-1 prostate cells. Furthermore, ROCKII activity and phosphorylation of myosin light chain kinase decrease as a result of either PBA or BA treatment in DU-145 cells, suggesting these compounds target actomyosin-based contractility.Key words: boric acid, phenylboronic acid, migration, prostate cancer, natural compounds, DU-145     

Phenylboronic acid-salicylhydroxamic acid bioconjugates. 1. A novel boronic acid complex for protein immobilization

A chemical affinity system exhibiting antibody-like properties is described. The system exploits bioconjugates with appended phenylboronic acid (PBA) moieties and a support-bound phenylboronic acid complexing reagent derived from salicylhydroxamic acid (SHA) for protein immobilization on a chromatographic support. The structure of the PBA.SHA complex was characterized by 11B NMR and mass spectrometry and compared with complexes derived from model compounds. Protein modification reagents were synthesized from 3-aminophenylboronic acid and utilized to prepare bioconjugates from alkaline phosphatase (AP) and horseradish peroxidase (HRP). AP obtained from one source afforded PBA bioconjugates exhibiting significant loss of enzymatic activity, whereas AP obtained from a second source afforded PBA bioconjugates exhibiting only a modest loss of enzymatic activity. Conversely, HRP afforded PBA bioconjugates exhibiting no loss of enzymatic activity. SHA-modified Sepharose was prepared by reaction of methyl 4-[(6-aminohexanoylamino)methyl]salicylate with CNBr-activated Sepharose 4B, followed by treatment with aqueous alkaline hydroxylamine. PBA-AP and PBA-HRP conjugates were efficiently immobilized on SHA-Sepharose at pH 8.3. PBA-AP conjugates were retained after washing with acidic buffers at pH 6.7, 4.2, and 2.5, whereas PBA-HRP conjugates were retained after washing with buffer at pH 6.7, but were eluted to some extent at and below pH 4.2. The results are interpreted in terms of multivalent interactions involving boronic acid complex formation between the enzyme bioconjugates and immobilized complexing reagent.     

Studies on the boronation of methyl-β-d-cellobioside—a cellulose model

The conversion of phenylboronic acid (PBA) with methyl-β-d-cellobioside (Me-β-d-clb) and cellodextrins (DP_w 12) was investigated to gain a basic understanding of the interactions of boric acid derivatives with oligo- and polyglucans. By means of MS and NMR experiments, it was possible to show a first stage formation of a six-membered ring at C-4 and C-6 of the non-reducing glucose occurs as in the case of monosaccharides. If the amount of reagent is increased the formation of seven-membered rings at the secondary OH moieties is observed. Even the existence of two of these large ring-systems in the direct neighborhood was found. Application of an excess of boronation reagent led to dimerization reactions of Me-β-d-clb via the primary reducing glucose residue as confirmed by DOSY NMR studies. Preliminary ¹³C NMR studies for the interaction of cellodextrins with PBA in DMSO solution confirmed a functionalization at the trans-1,2-diol moieties of these oligomers. The amount of reagent applied may either was shown to lead to soluble products or to insoluble cross-linked material.     

Affinity chromatography of yeast alpha-glucosidase using ligand-mediated chromatography on immobilized phenylboronic acids.

The synthesis of 3-nitro-4-(6-aminohexylamido)phenylboronic acid is described. The properties of two novel forms of immobilized phenylboronate agarose adsorbents [m-aminophenylboronic acid-Matrex Gel and 3-nitro-4-(6-aminohexylamido)phenylboronic acid-Sepharose CL-6B] were investigated. Both gels bind and selectively retard the glycoprotein alpha-glucosidase from yeast. The retardation is affected by following parameters: (i) pH, (ii) presence of sugar, (iii) concentration of sugar and (iv) buffer species (especially triethanolamine). Five sugars were studied, namely sorbitol, fructose, ribose, glucose and maltose. The concentration of sugar required to produce significant retardation increased in the above order, whereas the ability of sugar to form a complex with boron decreases in the same order. These effects were observed with crude as well as pure enzyme. Since alpha-glucosidase is a glycoprotein, it is proposed that this protein is mainly bound to these immobilized phenylboronates via sugar (glyco) residues. Displacement of the enzyme from the column is effected by the sugar in the buffer (or in a preincubation mixture). However, the marked pH-dependence (this retardation effect could only be observed at pH 7.4) suggests that these results are not due solely to hydrophobic or ionic mechanisms and are more complex than simple sugar-phenylboronic acid interactions.     

Enhanced cellular uptake efficiency of DCM probes or SN38 conjugating with phenylboronic acids

High-level of sialic acid (SA) expression on the surface of cancer cells is observed extremely common. Phenylboronic acids (PBAs) have a high affinity with SA. The cellular uptake efficiency could be enhanced by the strategy of introducing PBA fragments to the compounds. In this work, we synthesized five new probes with the Dicyanomethylene-4H-pyran (DCM) fluorophore, three of them conjugated with different phenylboronic acid fragments. By cellular uptake experiments, DLCB and DLAB showed enhanced cellular uptake abilities compared with DLN and DLO. These two effective phenylboronic acid fragments were then conjugated with SN-38 and the conjugates showed enhanced cellular uptake abilities by 3-fold or 7-fold compared with irinotecan. In summary, the strategy of introducing 4-carboxyphenylboronic acid and 3-amino-benzoxaborole groups shows great potential in drug delivery system. Moreover, the released linkers between boric acid and drugs deserve further studies.     

Boron Nutrition of Cultured Tobacco BY-2 Cells. II. Characterization of the Boron-Polysaccharide Complex

In cultured tobacco BY-2 cells, more than 90% of the cellularboron (B) occurs in the cell wall and a negligible amount ofB is detected in the membrane fraction. Nearly 80% of the cellwall B binds to rhamnogalacturonan II (RG-II) to form a borate-dimericRG-II complex. Mono-meric RG-II is not detected in the cellwall, but it is detected in the extracellular polysaccharides.The complex is reconstituted spontaneously in vitro simply bymixing mon-omeric RG-II and boric acid at pH 4. Germanic acid,which partially substitutes for B in the growth of the B-deprivedplants, also induces dimerization of RG-II. These results suggeststhat B may fulfill its essential function as forming the B-RG-IIcomplex in cell walls. ¹ Present address: Kasai Experimental Farm, Sumitomo ChemicalCo., Ltd., Kasai, Hyogo, 675%ndash;23 Japan     

Aquaglyceroporins: Generalized metalloid channels

Background

Aquaporins (AQPs), members of a superfamily of transmembrane channel proteins, are ubiquitous in all domains of life. They fall into a number of branches that can be functionally categorized into two major sub-groups: i) orthodox aquaporins, which are water-specific channels, and ii) aquaglyceroporins, which allow the transport of water, non-polar solutes, such as urea or glycerol, the reactive oxygen species hydrogen peroxide, and gases such as ammonia, carbon dioxide and nitric oxide and, as described in this review, metalloids.

Scope of review

This review summarizes the key findings that AQP channels conduct bidirectional movement of metalloids into and out of cells.

Major conclusions

As(OH)₃ and Sb(OH)₃ behave as inorganic molecular mimics of glycerol, a property that allows their passage through AQP channels. Plant AQPs also allow the passage of boron and silicon as their hydroxyacids, boric acid (B(OH)₃) and orthosilicic acid (Si(OH)₄), respectively. Genetic analysis suggests that germanic acid (GeO₂) is also a substrate. While As(III), Sb(III) and Ge(IV) are toxic metalloids, borate (B(III)) and silicate (Si(IV)) are essential elements in higher plants.

General significance

The uptake of environmental metalloids by aquaporins provides an understanding of (i) how toxic elements such as arsenic enter the food chain; (ii) the delivery of arsenic and antimony containing drugs in the treatment of certain forms of leukemia and chemotherapy of diseases caused by pathogenic protozoa; and (iii) the possibility that food plants such as rice could be made safer by genetically modifying them to exclude arsenic while still accumulating boron and silicon. This article is part of a Special Issue entitled Aquaporins.     

Partial purification and some properties of urease from the alkaliphilic cyanobacteriumNostoc calcicola

Urease extracted from an alkaliphilic diazotrophic cyanobacteriumNostoc calcicola was partially purified and some of its properties were studied. Urease purified 39-fold from the crude enzyme extract showed its optimum activity at pH 7.5 and at 40°C with aK _m value of 120 μmol/L. The enzyme was found to be sensitive to metal cations, particularly Hg²⁺, Ag⁺ and Cu²⁺. 4-Hydroxymercuribenzoate (a mercapto-group inhibitor) and acetohydroxamic acid (a chelating agent of nickel) inhibited, the enzyme activity completely. These results suggest the involvement of an SH-group and Ni²⁺ in the activity of urease fromN. calcicola.     

Permeability and the mechanism of transport of boric acid across the plasma membrane of Xenopus laevis oocytes

Boron is an essential element for vascular plants and for diatoms, cyanobacteria, and a number of species of marine algal flagellates. Boron was recently established as an essential micronutrient for frogs (Xenopus laevis) and preliminary evidence suggests that it may be essential for all animals. The main form of B, which is available in the natural environment, is in the form of undissociated boric acid. The permeability coefficient and the mechanism of transport of boric acid, however, have not been experimentally determined across any animal membrane or cell. In the experiments described here, the permeability coefficient of boric acid in Xenopus oocytes was 1.5 × 10⁻⁶ cm/s, which is very close with the permeability across liposomes made with phosphatidylcholine and cholesterol (the major lipids in the oocyte membrane). Moreover, we investigated the mechanism of boric acid movement across the membrane of Xenopus oocytes and we compared it with the transport across artificial liposomes. The transport of boric acid across Xenopus oocytes was not affected by inhibitors such as HgCl₂, phloretin, or 4,4-diisothiocyanatostilbene-2,2′-d-sulfonic acid (DIDS). The kinetics of B uptake was linear with concentration changes, and the permeability remained the same at different external boric acid concentrations. These results suggest that B transport occurs via simple passive diffusion through the lipid bilayer in Xenopus oocytes.     

Measurement of borate in occupational environments

The hydration stability for inhalable borate particles has been characterized as a function of temperature and relative humidity when collected by a field personnel monitor. The rate of hydration was measured for boric acid (B[OH]3); Neobor borax 5 mol (Na2O x 2B2O3 x 5H2O); borax 10 mol (Na2O x 2B2O3 x 10H2O); anhydrous boric acid (B2O3); and anhydrous borax (Na2O x 2B2O3). The particle size is large in bulk commercial products, such that they can be handled and stored without problems. However, inhalable dust particles, in the range of 20 microm (MMD), undergo hydration/dehydration rapidly owing to their high surface-to-volume ratio. The hydration state of a collected air sample was found to be strongly dependent on the conditions of relative humidity and temperature during its collection. As a consequence, the actual chemical species of dust being inspired cannot be identified accurately. Inhalable particles of borax 10 mol placed in a field personal monitoring cartridge and exposed to dry air at 2.0 L/min at 70 degrees F for 7 h undergo rapid dehydration, producing a sodium borate residue having significantly less than four waters of hydration. Likewise, inhalable particles of anhydrous boric acid and anhydrous borax were found to hydrate under normal atmospheric conditions. Borax 5 mol and boric acid were found to be stable to dehydration. In most cases, the specific borate species or borate compounds collected in a field monitor cannot be accurately characterized other than by their boron (B) content.     

Boron in plant cell walls

Boron is an essential element for higher plants, yet the primary functions remain unclear. In intact tissues of higher plants, this element occurs as both water soluble and water insoluble forms. In this review, the intracellular localisation of B and possible function of B in cell walls of higher plants are discussed. The majority of the water soluble B seems to be localised in the apoplastic region as boric acid. The water insoluble B is associated with rhamnogalacturonan II (RG-II) and the complex is ubiquitous in higher plants. In the Brassicaceae, Apiaceae, Chenopodiaceae, Asteraceae, Amaryllidaceae, and Liliaceae, nearly all the cell wall B is associated with RG-II, while in the Cucurbitaceae, only half of the cell wall B is in this complex. In duckweed, a different type of B-polysaccharide complex has been identified.Analysis of the structure of the B–RG-II complex reveals that the complex is composed of boric acid and two chains of monomeric RG-II. Boric acid does not merely bind to sugars but crosslinks two chains of pectic polysaccharide at the RG-II region through borate-diester bonding, thus forming a network of pectic polysaccharides in cell walls. The B–RG-II complex is reconstituted in vitro only by mixing monomeric RG-II and boric acid at pH 4.0. In the in vitro reconstitution, germanic acid can substitute for boric acid to some extent. The RG-II epitope, which cross reacts with the antibody toward the B-RG-II complex, is detected in walls of every cell in radish roots. The epitope is also detected in growing pollen tube cell walls, which are claimed to require B.Whilst it is now clear that boric acid links some cell wall components, it is not yet clear whether there is a structural requirement for B in cell wall function.     

Identification of serine and histidine adducts in complexes of trypsin and trypsinogen with peptide and nonpeptide boronic acid inhibitors by 1H NMR spectroscopy.

We have previously shown, in 15N NMR studies of the enzyme's active site histidine residue, that boronic acid inhibitors can form two distinct types of complexes with alpha-lytic protease. Inhibitors that are structural analogs of good alpha-lytic protease substrates form transition-state-like tetrahedral complexes with the active site serine whereas those that are not form complexes in which N epsilon 2 of the active site histidine is covalently bonded to the boron of the inhibitor. This study also demonstrated that the serine and histidine adduct complexes exhibit quite distinctive and characteristic low-field 1H NMR spectra [Bachovchin, W. W., Wong, W. Y. L., Farr-Jones, S., Shenvi, A. B., & Kettner, C. A. (1988) Biochemistry 27, 7689-7697]. Here we have used low-field 1H NMR diagnostically for a series of boronic acid inhibitor complexes of trypsin and trypsinogen. The results show that H-D-Val-Leu-boroArg and Ac-Gly-boroArg, analogs of good trypsin substrates, form transition-state-like serine adducts with trypsin, whereas the nonsubstrate analog inhibitors boric acid, methane boronic acid, butane boronic acid, and triethanolamine borate all form histidine adducts, thereby paralleling the previous results obtained with alpha-lytic protease. However, with trypsinogen, Ac-Gly-boroArg forms predominantly a histidine adduct while H-D-Val-Leu-boroArg forms both histidine and serine adducts, with the histidine adduct predominating below pH 8.0 and the serine adduct predominating above pH 8.0.(ABSTRACT TRUNCATED AT 250 WORDS)     

Polyvinylamine boronate adhesion to cellulose hydrogel

The adhesion of polyvinylamine to wet cellulose was significantly enhanced by the presence of pendant phenylboronic acid groups. It is proposed that adhesion results from boronate ester formation with cellulose at pH > 8. Experiments with phenol derivatized polyvinylamine gave low adhesion supporting the fact that the boronate moiety was responsible for strong adhesion to never-dried cellulose surfaces.     

Effects of polyols, saccharides, and glycoproteins on thermoprecipitation of phenylboronate-containing copolymers

The copolymer of 3-(acrylamido)phenylboronic acid and N-isopropylacrylamide (82:18, Mn = 47000 g/mol) was prepared by free radical polymerization. The copolymer showed typical thermoprecipitation behavior in aqueous solutions; its phase transition temperature (TP) was 26.5 +/- 0.2 degrees C in 0.1 M glycine-NaOH buffer containing 0.1 M NaCl, pH 9.2. Due to specific complex formation of the pendant boronates with sugars, TP was strongly affected by the type of sugar and its concentration at pH 9.2. Fructose, lactulose, and glucose caused the largest increase in TP (up to 4 degrees C) at 0.56 mM concentration, attributed to the high binding affinity of the sugars to borate and phenylboronate. Among the sugars typical of nonreducing ends of oligosaccharides, N-acetylneuraminic acid had the strongest effect on TP (ca. 2 degrees C at 0.56 mM concentration and pH 9.2), while the effects of other sugars are well expressed at the higher concentrations (16 and 80 mM) and decreased in the order xylose approximately galactose >or= N-acetyllactosamine >or= mannose approximately fucose > N-acetylglucosamine. The effect exerted on the phase transition by glycoproteins was the strongest with mucin from porcine stomach and decreased in the series mucin > horseradish peroxidase > human gamma-globulin at pH 9.2. As a first approximation, the weight percentage and/or the number of oligosaccharides in glycoproteins determined the character of their interaction with the pendant phenylboronates and, therefore, the effect on the copolymer phase transition.