Prey selection by two benthic fish species in a Mato Grosso stream, Rio de Janeiro, Brazil

Key to understand predator choice is the relationship between predator and prey abundance. There are few studies related to prey selection and availability. Such an approach is still current, because the ability to predict aspects of the diet in response to changes in prey availability is one of the major problems of trophic ecology. The general objective of this study was to evaluate prey selection by two species (Characidium cf. vidali and Pimelodella lateristriga) of the Mato Grosso stream, in Saquarema, Rio de Janeiro, Brazil. Benthos and fishes were collected in June, July and September of 2006 and January and February of 2007. Fish were collected with electric fishing techniques and benthos with a surber net. Densities of benthic organisms were expressed as the number of individuals per/m2. After sampling, the invertebrates were fixed in 90% ethanol, and, in the laboratory, were identified to the lowest taxonomical level. Approximately, seventy individuals from each species were selected randomly in each month. Fishes were fixed in 10% formalin in the field and transferred to 70 degrees GL ethanol in the laboratory. Fishes had their stomachs removed for subsequent analysis. Fish diet was described according to the numeric frequency method. The Manly Electivity Index was applied in order to verify prey selection. The most abundant families in both benthos and diet of both fish species were the same, indicating that these species consume mainly most abundant prey in the environment. We concluded that prey selection occurs even for preys that had small abundance in the environment. However, it is the availability of the macroinvertebrate resources that determines the major composition of items in diet of fish, demonstrating that the abundance is the factor that most influences the choice of prey.     

Habitat overlap between predatory benthic fish and their invertebrate prey in streams: the relative influence of spatial and temporal factors on predation risk

1. The spatial heterogeneity of ecosystems as well as temporal activity patterns of organisms can have far‐reaching effects on predator–prey relationships. We hypothesised that spatiotemporal constraints in mesohabitat use by benthic fish predators would reduce habitat overlap with benthic invertebrates and lead to mesohabitat‐specific predation risks. 2. We analysed the spatiotemporal activity patterns of two small‐bodied benthivorous fishes, gudgeon (Gobio gobio) and stone loach (Barbatula barbatula), and of benthic invertebrates in a small temperate stream during three 24‐h field experiments. By applying a novel method of field video observation, we monitored the spatiotemporal foraging behaviour of the fish in their natural environment. A parallel analysis of invertebrate mesohabitat use by means of small area Hess sampling allowed a direct estimation of habitat overlap at a pool–riffle scale. 3. Gudgeon showed a dominant spatial activity pattern preferring pools at all times of day, whereas stone loach used both mesohabitats but with a distinct temporal (nocturnal) activity pattern. The patterns of residence were not identical with those of active foraging. Invertebrate community composition differed significantly between mesohabitats but not between times of day. More than half of the total dissimilarity between pools and riffles was accounted for by six invertebrate taxa. Five of these were subject to higher fish predation in pools than in riffles. The total prey consumption of the two fish species together in pools was about three times as high as in riffles. Trophic niche breadth of stone loach and thus its predation range was broader than that of gudgeon. 4. These results indicate that the potential predation risk for stream invertebrates depends on the combination of spatial and temporal patterns of both predator and prey. Given the distinct differences in predation risk found between pools and riffles, we conclude that spatial heterogeneity at the mesohabitat scale can influence mechanisms and consequences of selective predation. We also suggest that the analysis of spatiotemporal predator–prey relationships should not be based on the premise that the main residence habitat and active foraging habitat of a predator are identical.     

Fish predation can induce mesohabitat-specific differences in food web structures in small stream ecosystems

Diverse benthic communities in streams include a wide variety of predators with different habitat preferences, e.g. for pools or riffles. We hypothesised that these preferences result in mesohabitat-specific predator community structures with quantitative differences concerning predation intensity by vertebrate and invertebrate predators, importance of intraguild predation, or top–down pressure. This hypothesis was evaluated for a small submontane stream by means of mesohabitat-specific quantification of prey consumption by two benthivorous fish species (Gobio gobio and Barbatula barbatula) and several invertebrate predators. The estimation was based on daily food rations and diet composition of predators and mesohabitat-specific predator biomass. We found clear differences between the two mesohabitat types. Predator food webs were less complex in pools than in riffles. Fish predation was more important than invertebrate predation in pools, and intraguild predation had a higher relative importance in these mesohabitats. These differences were probably caused by the mesohabitat use of G. gobio, the largest top predator, which preferred pools. Consequently, the predator food webs were more similar between the mesohabitats when fish were absent. Top–down pressure on primary consumers by all predators together was lowest in pools without fish, but the effect was not significant. Omnivory (including cannibalism) was intense, but its potentially destabilising effects were probably counterbalanced by mesohabitat connectivity. From the results of our experimental study, we conclude that even in small stream ecosystems, food web structures and predation pathways can differ between mesohabitats and that a mesohabitat-specific consideration will help to explain the variety of top–down effects on benthic communities.     

Identifying keystone habitats with a mosaic approach can improve biodiversity conservation in disturbed ecosystems

Conserving native biodiversity in the face of human‐ and climate‐related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal‐habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which connected, interacting collections of juxtaposed habitat patches are examined) provides a scientific foundation for addressing many disturbance‐related, ecologically based conservation problems. For example, if specific habitat types disproportionately increase biodiversity, these keystones should be incorporated into research and management plans. Our sampling of fish biodiversity and aquatic habitat along ten 3‐km sites within the Upper Neosho River subdrainage, KS, from June‐August 2013 yielded three generalizable ecological insights. First, specific types of mesohabitat patches (i.e., pool, riffle, run, and glide) were physically distinct and created unique mosaics of mesohabitats that varied across sites. Second, species richness was higher in riffle mesohabitats when mesohabitat size reflected field availability. Furthermore, habitat mosaics that included more riffles had greater habitat diversity and more fish species. Thus, riffles (<5% of sampled area) acted as keystone habitats. Third, additional conceptual development, which we initiate here, can broaden the identification of keystone habitats across ecosystems and further operationalize this concept for research and conservation. Thus, adopting a mosaic approach can increase scientific understanding of organismal‐habitat relationships, maintain natural biodiversity, advance spatial ecology, and facilitate effective conservation of native biodiversity in human‐altered ecosystems.     

Substrate roughness, fish grazers, and mesohabitat type interact to determine algal biomass and sediment accrual in a high-altitude subtropical stream

Since periphytic biofilm is an important source of food in lotic ecosystems, it is important to understand how key ecological factors affect the accrual and loss of algal biomass and sediment in the biofilm. We designed a field experiment to evaluate the effects of mesohabitat type (pools and riffles), grazing fish (control and exclusion), and substrate roughness (smooth and rough) on chlorophyll a, ash-free dry mass (AFDM), and total dry mass in a subtropical stream. Mesohabitat type did not influence the effect of grazers on periphyton. However, rough substrates accumulated more total dry mass in pools than in riffles, while smooth substrates accumulated similar amounts of total dry mass in both mesohabitats. The accrual of AFDM and chlorophyll a was greater on rough than on smooth substrates, regardless of mesohabitat. Treatments without fish accrued more total dry mass, AFDM, and chlorophyll a than treatments with fish, showing that fish play a major role in this stream by removing sediment and algal biomass. These results suggest that habitat simplification in the scale of substrate roughness and loss of large grazers may impact the accrual and loss of algal biomass and sediment in lotic ecosystems.     

Relationships between mesohabitats, ichthyological communities and IBI metrics adapted to a European river basin (The Meuse, Belgium)

We investigated the influence of mesohabitats on fish communities and on attributes of a multimetric index of fish integrity in the River Meuse basin. Three consecutive 150 m sectors in a Meuse tributary (Ourthe, Belgium), each divided in two or three sub-sections presenting various percentages of mesohabitats (riffles, runs and pools), were sampled by electrofishing. In each sub-section, relative and absolute biomasses of each fish species were estimated. The presence of limnophilic cyprinids was inversely correlated (r ² = 0.70 and 0.56 for absolute and relative biomass, respectively) with the percentage of riffles. Salmonids preferred runs and their absolute biomass was highly dependent (r ² = 0.71) on the proportion of this mesohabitat, whereas biomass of limnophilic cyprinids was highly correlated (r ² = 0.75 and r ² = 0.82 for absolute and relative biomass, respectively) with pools. A positive correlation (r ² = 0.58) was established between relative biomass of predators and the percentage of this mesohabitat. An IBI was calculated for the three sectors on the basis of results from the entire Meuse catchment. Scores of most metrics showed low variation among sectors but values of two metrics (% of individuals as tolerant, % of individuals as ubiquitous spawners) were greatest in sector 2, where pools predominated. Further, the lowest IBI score (51/65, integrity class: fair to good) was recorded in sector 2 where pools dominated, while sector 1 (where runs dominated) obtained the highest score (63/65, integrity class: excellent). Sector 3 which has a balanced proportion of riffles and runs obtained an intermediate score (57/65). Considering the response of IBI to the natural variation of mesohabitat proportions, it appears that an accurate sampling requires the prospection of a variety of mesohabitats (with a majority of runs) for the evaluation of river quality.     

Mesohabitat use by bullhead (Cottus gobio)

Habitat composition and connectivity within a stream vary with changing flows but the influence of changing flow on habitat use by fish is not well understood. Meso- and microhabitat surveys were used to investigate habitat use by bullhead (Cottus gobio Linnaeus) in response to discharge variation in a small tributary of the Upper Severn, England. Mesohabitat mapping surveys were carried out over a range of summer flows (0.016–0.216 m³ s⁻¹) and were coupled with direct underwater observations (snorkelling) of fish location. Five mesohabitat types—glides, runs, riffles, chutes and pools—were present in the reach at all flows surveyed and ‘backwaters’ were found at three flows. The macro-morphology of the reach comprised six riffle–pool sequences divided into 27 mesohabitats with the maximum diversity (23 mesohabitats) at intermediate flows (Q ₄₃) and only 15 mesohabitats at Q ₉₅. Despite low numbers of fish (N = 78), bullhead displayed a strong association (51% of the fish) with glides—relatively deep habitats having high rates of velocity increase with flow. However, 54% of the fish were observed in two large, persistent mesohabitats, a glide (34%) and a pool (20%), both located below a faster flowing mesohabitat. Habitat use curves based upon micro-habitat data showed bullhead favoured low velocities (<0.30 m s⁻¹), depths less than 0.30 m and a cobble substratum. This study illustrates the value of cross-scale investigations in linking fish ecology, flow and physical habitat variability and suggests mesohabitat size, persistence and arrangement may influence fish distribution.     

Habitat effects on invertebrate drift in a small trout stream: implications for prey availability to drift-feeding fish

In this study, we focused on the drivers of micro- and mesohabitat variation of drift in a small trout stream with the goal of understanding the factors that influence the abundance of prey for drift-feeding fish. We hypothesized that there would be a positive relationship between velocity and drift abundance (biomass concentration, mg/m³) across multiple spatial scales, and compared seasonal variation in abundance of drifting terrestrial and aquatic invertebrates in habitats that represent the fundamental constituents of stream channels (pools, glides, runs, and riffles). We also examined how drift abundance varied spatially within the water column. We found no relationship between drift concentration and velocity at the microhabitat scale within individual pools or riffles, suggesting that turbulence and short distances between high- and low-velocity microhabitats minimize changes in drift concentration through settlement in slower velocity microhabitats. There were also minimal differences in summer low-flow drift abundance at the mesohabitat scale, although drift concentration was highest in riffle habitats. Similarly, there was no differentiation of drifting invertebrate community structure among summer samples collected from pools, glides, runs, and riffles. Drift concentration was significantly higher in winter than in summer, and variation in drift within individual mesohabitat types (e.g., pools or riffles) was lower during winter high flows. As expected, summer surface samples also had a significantly higher proportion of terrestrial invertebrates and higher overall biomass than samples collected from within the water column. Our results suggest that turbulence and the short length of different habitat types in small streams tend to homogenize drift concentration, and that spatial variation in drift concentrations may be affected as much by fish predation as by entrainment rates from the benthos. Handling editor: Robert Bailey     

Terena Amerindian group autosomal STR data: comparison studies with other Brazilian populations

Allele frequencies for the high polymorphic short tandem repeats (STR) loci PentaE, PentaD, D18S51, D21S11, TH01, D3S1358, FGA, D16S539, D7820, D13S317, vWA and D81179 were analysed in an native Amerindian population from Mato Grosso do Sul state named Terena. Deviations from Hardy–Weinberg expectations were evaluated and the results showed no differences from equilibrium in all loci. The combined power of discrimination and the combined power of exclusion for the 12 tested STR loci were 0.99999999 and 0.999999 respectively. The Terena population data were compared to other from 11 Brazilian populations (Amazônia, Pernambuco, Mato Grosso do Sul, São Paulo, Rio Grande do Sul, Alagoas, Sergipe, Rio Grande do Norte, Santa Catarina, Rondônia and Rio de Janeiro) representing the major Brazilian geographic regions. The F_ST comparative analysis showed no significant differences between all those populations except when comparing Terena with the remained ones.     

Comparisons of benthic invertebrates between riffles and pools

Benthic species assemblages in upstream and downstream ends of riffles and in pools were investigated seasonally in the first five orders of an alluvial gravel stream with distinct pool and riffle channel form. Riffles comprised < 10% of stream area and were separated by pools with extensive bedrock substrate (ca. 15–85% of total surface area) which was scoured during periodic high flow. Virtually all taxa were more abundant in riffles than in pools, except chironomids which were more equally distributed. Inconsistent results were obtained for upstream-downstream comparisons within riffles. Intermittent headwater reaches (orders 1 & 2) which supported half as many taxa retained this pattern during periods of flow, although riffles at these sites were dry from mid-June to mid-November. Pools which contained more gravel, indicating less disturbance during high flow, had a richer assemblage of benthic species than other pools. Many invertebrates in pools may have been there as a result of drift from their preferred riffle habitats, but the presence of gravel in the pools indicates less intense flow disturbance during floods, provides protection from the mild scouring that does occur during floods, and provides refugia from predators.     

Reconstructing riverine mesohabitat unit composition using fish community data and an autecology matrix

This research proposes a simplified method for estimating the mesohabitat composition that would favour members of a given set of aquatic species. The simulated composition of four types of mesohabitat units (deep pool, shallow pool, deep riffle and shallow riffle) could guide the design of in‐stream structures in creating pool‐riffle systems with ecological reference. Fish community data and an autecology matrix are used to support the development of a stream mesohabitat simulation based on regression models for reaches in mid to upper‐order streams. The fish community‐mesohabitat model results constitute a reference condition that can be used to guide stream restoration and ecological engineering decisions aimed at maintaining the natural ecological integrity and diversity of rivers.     

Macroinvertebrate assemblages at mesohabitat scale in small sized volcanic siliceous streams of Central Italy (Mediterranean Ecoregion)

According to the guidelines of the European Water Framework Directive, assessment of the ecological quality of streams and rivers should be based on type-specific reference conditions. Moreover to support biological indicators an hydromorphological analysis is also requested for each river type. The rationale for including an habitat assessment in biomonitoring study is that a biological community can be influenced by habitat quality just as water chemistry.In the present work benthic macroinvertebrates were analysed in a specific river type of Central Italy (small-sized streams, volcanic-siliceous), to identify taxa assemblages at the mesohabitat scale and to test how common measures of benthic community used in biomonitoring differ between riffles and pools in order to evaluate if differences may influence water quality classification.Macroinvertebrates were collected in 10 selected streams, covering the whole quality range present in the geographic area from ‘reference sites’ to human-impacted sites, along a pool–riffle sequence following a multihabitat sampling protocol.We compared assemblage of macroinvertebrates found in different mesohabitats using principal component analysis (PCA). Similar site grouping was obtained in riffle, pool and abiotic analysis.The measures of diversity and abundance were used as replicates in ANOVA analysis to test differences between pools and riffles within the groups of sites. There were no significant differences in terms of taxa richness and total abundance.When we compared the abundance of each taxon we found significant differences only in the group of reference sites with 18 taxa (about 25%) that showed a significant habitat preference.Our findings support that macroinvertebrates assemblages reflected primarily the environmental conditions and differences at mesohabitat scale are strongly correlated to hydromorphological condition and are maximized in reference sites. However such differences do not influence the ecological status assessment in this typology.     

No quarter: Lack of refuge during flow intermittency results in catastrophic mortality of an imperiled minnow

1. Many once-perennial rivers have become intermittent. Channel drying can result in fish mortality if refuges are not available. Understanding where refuges occur and if fishes use these refuges can provide insight for species persistence and help stakeholders manage limited resources. Streamflow diversions in the Rio Grande of New Mexico can result in >60 km losses of aquatic habitat, affecting up to 30% of the range of imperiled Rio Grande silvery minnow (Hybognathus amarus). Potential refuges include areas with perennial flow below diversion dams, isolated pools, and irrigation return flows.
2. We examined spatial and temporal patterns of both adult and young-of-year Rio Grande silvery minnow collected in isolated pools that formed during streamflow intermittency from 2009 to 2019. We hypothesised that: (1) Rio Grande silvery minnow would be more numerous in pools that persisted longer; (2) they would be more numerous in isolated pools located closer to upstream areas of perennial flow, due to upstream movement to escape drying; and (3) increased rate of aquatic habitat loss each day would result in more Rio Grande silvery minnow in isolated pools.
3. During the 12 years of the study, we counted Rio Grande silvery minnow in 3,985 isolated pools that formed during streamflow intermittency. We related counts of Rio Grande silvery minnow in each pool to the maximum pool depth, rate of loss of aquatic habitat that occurred that day, and distance each pool was to an upstream barrier. In 2016, we examined persistence of 290 isolated pools until complete desiccation or reconnection with continuous flows occurred, and the factors that influenced pool persistence.
4. Deeper pools persisted for longer, but depth had a small positive effect on counts of adult Rio Grande silvery minnow and no effect on counts of young-of-year in isolated pools. Adults were more numerous in upstream isolated pools, whereas young-of-year were more numerous in downstream isolated pools. Rate of channel drying had little effect on the numbers of adult Rio Grande silvery minnow in isolated pools, but more young-of-year were stranded when the rate of drying was faster. On average, pools persisted <4 days and 263 of 290 dried completely before continuous flows returned. Only 66 of 4,749 Rio Grande silvery minnow occurred in pools that did not dry completely.
5. Rio Grande silvery minnow did not appear to escape channel intermittency; instead, they became stranded in shrinking isolated pools that did not persist long enough to act as refuges for fishes. Lack of refuge during channel intermittency would result in catastrophic mortality of fishes through complete desiccation of pools if there were no management actions, such as translocating fish. To increase persistence through streamflow intermittency, conservation actions should match the species response to intermittency by ensuring the availability of perennial-water refuges at the appropriate spatial and temporal scale.

     

山地河流浅滩深潭生境大型底栖动物群落比较研究——以重庆开县东河为例

浅滩和深潭是山地河流中常见的河流生境结构。2011年7月,在重庆开县东河上游双河口-杉木桥河段,选择21个浅滩和深潭,调查大型底栖动物,研究影响不同生境中底栖动物组成、分布和多样性的生态机理。结果表明:调查河段浅滩和深潭中大型底栖动物分别为31种和24种,密度分别为450.62 个/m²和86.24 个/m²,生物量分别为2.88 g/m²和0.55 g/m²。浅滩有指示种11种,即纹石蛾(Hydropsyche sp.)、假蜉(Iron sp.)、假二翅蜉(Pseudocloeon sp.)、舌石蛾(Glossosoma sp.)、高翔蜉(Epeorus sp.1)、背刺蜉(Notacanthurus sp.)、Heterocloeon sp、锯形蜉(Serratella sp.)、朝大蚊(Antocha sp.)、等蜉(Isonychia sp.)、溪颏蜉(Rhithrogena sp.)。深潭指示种仅蜉蝣(Ephemera sp.)和黑大蚊(Hexatoma sp.)两种。刮食者为两类生境的优势功能摄食类群。浅滩中滤食者和刮食者比例显著高于深潭,而收集者和捕食者显著低于深潭。两类生境中大型底栖动物群落结构差异显著。浅滩中大型底栖动物的密度、生物量、丰富度指数、Shannon-Wiener 指数、改进的Shannon-Wiener指数均明显高于深潭。受地貌形态、水力特征和冲淤变化规律影响的生境稳定性和异质性差异是导致大型底栖动物群落差异的主要原因。     

Species assemblages as descriptors of mesohabitats

Eight mesohabitats, visually distinct units of habitat withinthestream, were sampled seasonally in a lowland chalkstreamreach. Theaim of the study was to test if mesohabitats defined asstructuralunits were inhabited by particular species assemblages and howthese varied with season. Classification (Bray-Curtisdissimilarityindex and UPGMA) and ordination analyses (DCA) of thedistributionof 258 species in 230 samples, were first used to check theagreement between the subjectively-selected mesohabitat andtheirassociated faunal assemblages. There was a goodcorrespondence, andmesohabitat samples were grouped into 5 major groups (Ranunculusin spring, silt, sand, gravel and macrophytes)whichwere further sub-divided to give a total of 11 groups whenseasonaldifferences were considered. Spearman rank correlation betweenthespatial distribution of mesohabitat groups with environmentalvariables revealed that water velocity and flow dynamicstogetherwith the nature of the substratum, influenced the distributionofthe benthic communities. To evaluate qualitative andquantitativedifferences in taxa composition among mesohabitats,informationstatistics tests and analyses of variance were used incombinationwith the Tukey honestly significant difference test. The 11groupswere characterised by abundance and frequency indicatorspecies.Inverse analysis of dominant species of the community showed agoodequivalence with mesohabitat groups and their indicatorspeciesobtained by direct analysis. The resulting species assemblagesrepresent faunal adaptation to the particular mesohabitats inrelation to natural environmental fluctuations. Themesohabitatscale provides a convenient structural ecological unit toexaminethe functional dynamics of faunal communities inrivers.     

Effects of disturbance caused by selective timber extraction on fish communities in Sabah, Malaysia

To examine the effects of selective timber extraction on fish communities in Sabah, Malaysia, quantitative samples of fishes were taken from thirteen streams running through undisturbed rainforest or through forest that had been selectively logged 3–18 years previously. Multivariate analysis (canonical discriminant analysis and cluster analysis) indicated that mesohabitats within streams (riffles and pools) and differences in stream size were more important in determining community structure than logging history. Riffles in streams running through logged or undisturbed forest were indistinguishable using relative biomass or abundance data, as were pools from small streams (approximate order 2). Fish communities from pools in larger streams showed some separation in multivariate space corresponding to a complex set of relative changes in abundance and/or biomass between species. However it was difficult to unambiguously assign such changes to logging regime alone. There appeared to be some differences in fish communities between streams in recently-logged (3–7 years) and old-logged (17–18 years) areas related to abundance or biomass of three cyprinids (Garra borneensis, Lobocheilos bo and Osteochilus chini). Only one species, Pangio mariarum, was not found in streams in logged forest, but it was only found at one location in undisturbed forest. A number of other species showed significant differences in abundance or biomass between sites but most of these were only present at some sites and in low abundance. Principal components analysis of habitat data showed that riffle sites were homogeneous whatever their logging history as were pools in unlogged large streams. Pools in logged large streams were significantly more heterogeneous but in a random rather than systematic manner. It is concluded that the type of selective logging practices used locally have low impact on fish communities through mechanisms of persistence and/or rapid recolonisation.     

Unusual occurrence of a ZZ/ZW sex-chromosome system and supernumerary chromosomes in Characidium cf. fasciatum (Pisces, Characiformes, Characidiinae)

Individuals of two populations of the fish Characidium cf. fasciatum were cytogenetically studied and showed a basic diploid number of 50 chromosomes. Some fishes were found to have 51 to 54 chromosomes due to the presence of one to four small subtelocentric/acrocentric supernumerary chromosomes. When analyzed by conventional Giemsa staining, male and female specimens of C. cf. fasciatum from the Quinta stream and Pardo River presented the same basic karyotypic macro- and microstructure, consisting of 32 metacentric and 18 submetacentric chromosomes. Ag-NORs were terminally located on the long arms of two submetacentric chromosome pairs. Constitutive heterochromatin was identified by C-banding as small pericentromeric blocks in the majority of the chromosomes, and B-chromosomes were found to be heterochromatic. The occurrence of one totally heterochromatic submetacentric chromosome restricted to females and considered as an unusual feature in fish karyotypes led to the identification of a ZZ/ZW sex-chromosome system. The implications of chromosomic differentiation observed in the genus Characidium are discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Spatial and temporal patterns in the fish assemblages of individual pools in a midwestern stream (U.S.A.)

Synopsis The composition and consistency of fish assemblages in 14 adjacent pools (6–120 m long) of a clear-water, limestone and gravel creek in midwestern U.S.A. were quantified in eight snorkeling surveys over 19 months, to establish a baseline of natural variation in the system at this scale. The fauna of the stream was dominated numerically by minnows (Cyprinidae), sunfish and black bass (Centrarchidae), and topminnows (Fundulidae). The pool fish fauna of the total 1 km reach (including all 14 pools) was highly consistent throughout the study, despite two major floods. Assemblages in individual pools generally were consistent, but there was more variation within pools than at the scale of the entire reach. Throughout the study, most individual pools remained within discrete subsets of the total occupied multivariate space in a principal components analysis based on fish species abundances. Sunfishes (Lepomis spp.) and bass (Micropterus spp.) were more consistent in their distribution among pools than were minnows (Cyprinidae) or a topminnow (Fundulus). There were 25 significant correlations in occurrence of species pairs among stream pools, out of 91 possible comparisons of the 14 most abundant taxa in the reach. Many pools contained assemblages either dominated by large centrarchids or by abundant cyprinids and juvenile centrarchids, but intermediate assemblages also were observed. The dynamics of distribution of fish species and fish assemblages among individual stream pools are likely influenced by a combination of species-specific behaviors and habitat selection, predator constraints on use of individual pools by small fishes, riffles as size-selective barriers to fish movements between pools, dispersal of young-of-the-year fishes, and abiotic phenomena like floods. Individual stream pools appear to be discrete habitat units for fishes, and do represent an appropriate scale for biologically meaningful studies of fish assemblages or their effects on streams.Department of Zoology, University of Oklahoma