Gallery Forest or Herbaceous Wetland? The Need for Multi‐Target Perspectives in Riparian Restoration Planning

Much riparian restoration focuses on establishment of gallery forests, with relatively limited effort to restore herbaceous wetlands as key components of riparian landscape mosaics. Multiple reasons for this include inherent cultural or esthetic preferences, greater availability of scientific knowledge to support riparian forest restoration, and choices of ecological indicators commonly used for monitoring and assessment. Yet riparian herbaceous wetlands have declined dramatically as a result of river regulation and agricultural development, leading to losses of important habitats and ecosystem services that differ from those provided by gallery forests. As an alternative to a single‐minded focus on tree establishment, we advocate restoration of diverse and dynamic habitat mosaics in the context of natural variability of flow and sediment regimes. Landscape context should inform active restoration activities at the local scale, such that riparian forests are not planted in ecologically inappropriate sites. Models are needed to match life history requirements of particular wetland herbaceous plant species with details of flow and sediment transport regimes. We emphasize the importance of herbaceous wetlands as a critical and often overlooked component of riparian ecosystems, and the need for both passive and active restoration of fluvial marshes, sloughs, wet meadows, alkali meadows, off‐channel ephemeral ponds, and other critical floodplain communities associated with herbaceous plant dominance.     

Are Normal‐Weight Americans Over‐Fat?

Data from National Health and Nutrition Examination Surveys (NHANES) 1999-2004 have recently shown the percent body fat of American adults. Average American men and women have ~28 and 40% body fat. When categorized by BMI and age, the data also show high percent body fat values, particularly in lower BMI categories. These data should make one reflect on the health status of Americans in all BMI categories and the use of these data for public health recommendations.     

Can Carbon and Phosphorous Amendments Increase Native Forbs in a Restoration Process? A Case Study in the Northern Tall‐grass Prairie (U.S.A.)

In the northern Great Plains (United States), sites with less than 20% of native species are difficult to restore. We have experimented with a restoration method that shows some promise. It consists of systematically installing simulated small‐scale patches (8.0 m² in size) over 25% of an old field and then seeding these patches with native species. The working hypothesis is that these patches will generate a constant source of propagules which in time will lead to increases in native species diversity within the surrounding grass matrix. The objective of this paper was to determine whether soil amendments should be used to facilitate the establishment and persistence of native species (primarily forbs) within these patches. We seeded the patches with a mixture of native grass and forb species and applied four soil treatments: P fertilization, C additions, C + P, and a control (no amendments). Results for the first 5 years were as follows: (1) seeded forb richness was mostly unaffected by soil amendments; (2) seeded and nonseeded forb biomass and density were substantially reduced by C additions, whereas they were unaffected or increased under P additions; (3) both seeded and non‐native grass biomass substantially increased with C additions; and (4) there was an inverse relationship between native seeded forbs and non‐native grass biomass. Our conclusions are that: (1) P amendments are a potential tool for enhancing native seeded forb biomass in simulated small‐scale disturbance patches; and (2) C additions, although enhancing seeded grass biomass do not reduce the biomass of non‐native grasses.     

Mechanical Restoration of California Mixed‐Conifer Forests: Does it Matter Which Trees Are Cut?

The montane ecosystems of northern California have been subjected to repeated manipulation and active fire suppression for over a century, resulting in changes in community structure that contribute to increased wildfire hazard. Ecosystem restoration via reduction of stand density for wildfire hazard mitigation has received substantial attention in recent years; however, many ecological questions remain unanswered. This study compares belowground effects of two alternative forest thinning treatments designed to restore the large, old tree component of late‐seral structure, one of which focuses on restoring Pinus ponderosa dominance (Pine‐preference) and the other of which promotes development of large trees regardless of species (Size‐preference). We evaluated forest floor and soil chemical and microbial parameters in six experimental thinning treatment units of 40 ha each in the Klamath National Forest of northern California 5–6 years after thinning. Inorganic N availability, soil organic C content, phenol oxidase activity, and forest floor C:N ratio were greater in the Size‐preference treatment, whereas forest floor N and soil pH were greater in the Pine‐preference treatment. Our results indicate that these two thinning strategies produce differences in the soil environment that has the potential to affect growth rates of trees that remain, as well as the growth and survivorship of newly established seedlings. Thus, which species/individuals are removed during structural restoration of these mixed‐conifer forests matters both to the belowground components of the ecosystem today and the vegetation and productivity of the ecosystem in future decades.     

Restoration on abandoned tropical pasturelands—do we know enough?

Tropical rainforests have been disappearing at an alarming rate. In addition to preserving remaining tropical rainforests, we need to convert degraded and abandoned pasturelands into secondary forests. To accelerate this, human intervention in the recovery process is essential. In this review paper we (i) encapsulate some of the problems, which might surface when converting abandoned land to secondary forest. (ii) Look at some of the restoration techniques used in restoration programs and propose additional techniques for consideration. Major barriers to natural regeneration on abandoned and degraded pasturelands are: weed infestation, lack of indigenous soil seed bank, lack of seed supply/movement, soil compaction, depletion of soil nutrients and unsuitable microclimate and microhabitat. Although several restoration techniques have been recommended, most restoration programs have been carried out using native seedling transplants to accelerate natural recruitment. Most restoration groups in the tropics are still in the initial stages of determining which species or species combination to chose to gain maximum benefit. On the other hand restoration ecologists are struggling to detect which techniques are most appropriate to restore degraded and abandoned pasturelands. Our review shows that there is immediate need for further research and development on restoration techniques by examining the ecological and economic effectiveness of: direct seeding, stem cuttings using native pioneer or climax species and simple manipulation such as displacing branches of pioneer species with mature seeds on abandoned and degraded pasturelands and artificial perching to accelerate natural regeneration. These techniques are essential to successfully heal the wound humans have inflicted on the most spectacular and species-rich ecosystems on earth.     

Where is the Evidence for Assessing Evidence‐Based Restoration? Comments on Ntshotsho et al. (2010)

In their article “Assessing the evidence base for restoration in South Africa,” Ntshotsho et al. attempt to determine whether restoration in South Africa is evidence based by reporting on 10 projects' baseline data collection, goal setting, and monitoring. However, their contribution suffers from two major constraints. First, they confuse assessing the evidence base with assessing whether restoration is evidence based. Truly, assessing the evidence base would entail a systematic review of the quantity and quality of information available as well as the conclusions supported, perhaps in a meta‐analytical framework. Determining if restoration is evidence based would require a survey of project managers to evaluate if they take decisions based on scientific information. Second, Ntshotsho et al. do not clearly distinguish successfully achieving restoration project goals from successfully restoring ecosystems. They largely focus on projects' socioeconomic goals without emphasizing that these goals are, by definition, secondary to ecological goals in determining restoration success. Thus, Ntshotsho et al. provide neither a sound assessment of the evidence base for restoration nor whether restoration is evidence based. To evaluate and encourage evidence‐based restoration in South Africa, we recommend a simple assessment of the basis on which restoration managers make decisions, identification of factors precluding evidence‐based decision‐making, and development of platforms to evaluate the data collected in restoration programs to generate an evidence base from which to make defendable decisions.     

Are Socioeconomic Benefits of Restoration Adequately Quantified? A Meta‐analysis of Recent Papers (2000–2008) in Restoration Ecology and 12 Other Scientific Journals

Many ecosystems have been transformed, or degraded by human use, and restoration offers an opportunity to recover services and benefits, not to mention intrinsic values. We assessed whether restoration scientists and practitioners use their projects to demonstrate the benefits restoration can provide in their peer‐reviewed publications. We evaluated a sample of the academic literature to determine whether links are made explicit between ecological restoration, society, and public policy related to natural capital. We analyzed 1,582 peer‐reviewed papers dealing with ecological restoration published between 1 January 2000 and 30 September 2008 in 13 leading scientific journals. As selection criterion, we considered papers that contained either “restoration” or “rehabilitation” in their title, abstract, or keywords. Furthermore, as one‐third of the papers were published in Restoration Ecology, we used that journal as a reference for comparison with all the other journals. We readily acknowledge that aquatic ecosystems are under‐represented, and that the largely inaccessible gray literature was ignored. Within these constraints, we found clear evidence that restoration practitioners are failing to signal links between ecological restoration, society, and policy, and are underselling the evidence of benefits of restoration as a worthwhile investment for society. We discuss this assertion and illustrate it with samples of our findings—with regards to (1) the geographical and institutional affiliations of authors; (2) the choice of ecosystems studied, methods employed, monitoring schemes applied, and the spatial scale of studies; and (3) weak links to payments for ecosystem service setups, agriculture, and ramifications for public policy.     

Protein‐based virtual screening of chemical databases. II. Are homology models of g‐protein coupled receptors suitable targets?

The aim of the current study is to investigate whether homology models of G-Protein-Coupled Receptors (GPCRs) that are based on bovine rhodopsin are reliable enough to be used for virtual screening of chemical databases. Starting from the recently described 2.8 A-resolution X-ray structure of bovine rhodopsin, homology models of an "antagonist-bound" form of three human GPCRs (dopamine D3 receptor, muscarinic M1 receptor, vasopressin V1a receptor) were constructed. The homology models were used to screen three-dimensional databases using three different docking programs (Dock, FlexX, Gold) in combination with seven scoring functions (ChemScore, Dock, FlexX, Fresno, Gold, Pmf, Score). Rhodopsin-based homology models turned out to be suitable, indeed, for virtual screening since known antagonists seeded in the test databases could be distinguished from randomly chosen molecules. However, such models are not accurate enough for retrieving known agonists. To generate receptor models better suited for agonist screening, we developed a new knowledge- and pharmacophore-based modeling procedure that might partly simulate the conformational changes occurring in the active site during receptor activation. Receptor coordinates generated by this new procedure are now suitable for agonist screening. We thus propose two alternative strategies for the virtual screening of GPCR ligands, relying on a different set of receptor coordinates (antagonist-bound and agonist-bound states).     

Are three‐dimensional spider webs defensive adaptations?

Spider webs result from complex behaviours that have evolved under many selective pressures. Webs have been primarily considered to be foraging adaptations, neglecting the potential role of predation risk in the evolution of web architecture. The ecological success of spiders has been attributed to key innovations in how spiders use silk to capture prey, especially the invention of chemically adhesive aerial two‐dimensional orb webs. However, araneoid sheet web weavers transformed the orb architecture into three‐dimensional webs and are the dominant group of aerial web‐building spiders world‐wide, both in numbers and described species diversity. We argue that mud‐dauber wasps are major predators of orbicularian spiders, and exert a directional selective pressure to construct three‐dimensional webs such that three‐dimensional webs are partly defensive innovations. Furthermore, patterns of diversification suggest that escape from wasp predators may have facilitated diversification of three‐dimensional web‐building spiders.     

Are campylobacters now capable of carbo‐loading?

Campylobacters are a leading cause of gastrointestinal morbidity worldwide and the majority of human infections are triggered by eating foods contaminated with Campylobacter jejuni or Campylobacter coli. Campylobacters are equally notorious for their ability to mimic human glycoconjugate structures and for their capacity to synthesize both N‐ and O‐linked glycoproteins. These species were once considered to be asaccharolytic, but it was recently shown that several strains possess a pathway for fucose uptake and metabolism, providing those isolates with a competitive advantage in vivo. Vorwerk et al. have now demonstrated through isotopologue profiling that certain strains of C. coli and C. jejuni are capable of glucose catabolism through the Entner‐Doudoroff and pentose phosphate pathways. However, unlike the fate of fucose that has only been shown to be used for nutrition, glucose can be metabolized or incorporated into select amino acids and glycoconjugates. This discovery now provides researchers with the opportunity to introduce metabolically labeled sugars into campylobacters to study glycoconjugate biosynthesis within the cell. In addition, Vorwerk et al. add to the metabolic arsenal of campylobacters further highlighting the nutritional diversity among strains, even within the same species.     

Science‐Driven Restoration: A Square Grid on a Round Earth?

Is formal science necessarily an effective framework and methodology for designing and implementing ecological restoration programs? My experience as an ecologist in Hawaii suggests that even when scientific research programs are explicitly designed to guide and facilitate restoration, the culture of science, heterogeneity of nature, and real‐world complexities of implementing land management practices often limit the practical relevance of conventional scientific research. Although alternative models such as adaptive management and transdisciplinary science may facilitate research that more robustly models the real world, there is often little professional support or incentive to orient even these nonconventional research approaches toward actually solving on‐the‐ground problems. Thus, if one’s goal is to accomplish ecological restoration as quickly and efficiently as possible, a trial‐and‐error/intelligent tinkering–type approach might often be better than using more rigorous, data‐intensive scientific methodology. However, the sympatric implementation of ecological restoration and scientific research programs can lead to valuable synergies such as mutual logistical and financial support and the exchange of distinct forms of knowledge. The professional activities and mere presence of scientists can also greatly enhance a program’s prestige and visibility, which in turn can indirectly promote more and better ecological restoration. Improving our understanding of when formal science can directly assist restoration projects and when its value will more likely be synergistic and indirect could lead to better science, better ecological restoration, and better relationships between these two cultures.     

Permeability of Neotropical agricultural lands to a key native ungulate—Are well‐connected forests important?

Much of what remains of the Earth's tropical forests is embedded within agricultural landscapes, where forest is reduced and fragmented. As native forest ungulates are critical to maintaining forest function, it is imperative to understand how this functional group responds to declines in forest cover and connectivity resulting from agricultural expansion. We addressed this issue by evaluating selection of forest cover and forest connectivity by a key native ungulate of Neotropical forests, the white‐lipped peccary (Tayassu pecari Link 1795, Tayassuidae, Cetartiodactyla), in agricultural landscapes of Brazil. We evaluated selection using compositional analysis at two hierarchical levels, landscape, and home range. From 2013 to 2019, we GPS‐tracked eight white‐lipped peccary herds in Southwest Brazil, resulting in a total of 14,460 GPS locations. We found that herds can live in landscapes with a wide range of forest cover (35%–81% of home ranges covered by native forest), with significant, but not strong, selection at the landscape level (p = .045). Nevertheless, herds strongly select for forest cover within their home ranges (81%–97% of locations within native forest; highly significant selection at the home‐range level: p = .008). As for connectivity, herds significantly select the largest, most connected forest fragments at the landscape level (p = .04), but not at the home‐range level (p = .07). Our results support that Neotropical forests within agricultural landscapes need to be well connected in order to preserve this key native ungulate and maintain long‐term forest function. Abstract in Portuguese is available with online material.     

Are nutrient availability and acidity‐alkalinity gradients related in Sphagnum‐dominated peatlands?

Abstract. Gradients in acidity‐alkalinity and nutrient availability were studied in 2 Sphagnum‐dominated peatlands on the southeastern Italian Alps. Decreasing concentrations of most mineral elements (Ca²⁺, Mg²⁺, Mn²⁺, Al³⁺ and Si⁴⁺) in pore water indicated a progressively lower influx of mineral‐soil water from the slightly minerotrophic conditions in the peatland margins to ombrogenous conditions in the central part of the peatlands. This was paralleled by decreasing concentrations of ash, bulk density, Ca, Fe and, partly, Mn in the peat. The nutrient gradient, as defined by pore water concentrations of N and P, was largely independent of the acidity‐ alkalinity gradient: NO^3‐ and PO₄^3‐ had similar concentrations throughout the gradient, whereas NH₄⁺ concentrations increased with increasing pore‐water pH. In contrast, the peat nutrient gradient coincided with the acidity‐alkalinity gradient, with total concentrations of N and P decreasing from the margin to the centre. Bryophytes and vascular plants had different responses along the acidity‐alkalinity gradient and the nutrient gradient. Bryophyte distribution reflected the acidity‐alkalinity gradient both in pore water and in peat. Vascular plant distribution was mainly influenced by variations in nutrient availability.     

Are the spatio‐temporal dynamics of soil‐feeding termite colonies shaped by intra‐specific competition?

1. Soil‐feeding termites are abundant and diversified in neotropical forests, where they are among the major decomposers of the soil macrofauna. While niche specialisation along the humification gradient may reduce inter‐specific competition, some species are represented by numerous colonies likely to be involved in intra‐specific competition, but the subterranean nesting habits of most species of soil‐feeding termites make direct observations difficult. 2. The soldierless species Anoplotermes banksi Emerson was studied, which, unlike other Anoplotermes‐group species, builds arboreal nests that can be easily detected. To infer the biological processes driving the spatial distribution of this species, we conducted a 3‐year survey of the dynamics of colonisation of a 1‐ha plot by A. banksi. Ripley's L‐function, detecting aggregation or dispersion at various spatial scales, was used to investigate the distribution pattern of A. banksi nests, as well as the distribution of new and established nests. 3. Only one‐fourth of the nests recorded the first year were still alive after 3 years, highlighting a rapid turnover of the A. banksi nest population. Age classes were differentially affected by mortality, which was higher in young nests than in large, established nests. 4. Established nests were overdispersed at a short range, whereas young nests had a random or clumped distribution. Young nests tended to be overdispersed from established ones and were more abundant in areas with recently dead nests. Dead nests predominantly occurred where A. banksi nests were particularly abundant. Altogether, the present results indicate a negative interaction between neighbouring colonies suggesting intra‐specific competition.