Carbon dioxide exchange of Antarctic crustose lichens in situ measured with a CO2/H2O porometer

Summary Photosynthesis and respiration of crustose lichens in their natural situation were measured by means of a Walz porometer with a modified cuvette and a plexiglass ring. Habitat influence and the specific performance of three maritime Antarctic species were demonstrated by diurnal courses of microclimate and CO₂ exchange during rainy days. In further field experiments the photosynthetic response to soaking with water was tested. Haematomma erythromma is rain-exposed at its natural habitat on coastal rocks but tends to dry out quickly. The photosynthetic efficiency of the chlorophyll of this photophilous species was high. Lecidea sciatrapha appears to be chionophilous and had a low light compensation point of its net photosynthesis. The photosynthetic rates per surface area of these two species were low compared with those of Caloplaca sublobulata. According to its habitat selection C. sublobulata is typified as an ombrophobous lichen. This characterization was confirmed experimentally by our gas exchange measurements.     

Carrier of reduced sulfur is a possible role for thiotaurine in symbiotic species from hydrothermal vents with thiotrophic symbionts

Experiments supporting the possible role of the free sulfur-containing amino acid thiotaurine, as a transport and storage compound for sulfide in invertebrates with thiotrophic symbionts are described. The free-living chemotrophic sulfur-oxidising bacterium, Thiobacillus hydrothermalis (strain DSMZ 7121), was used as a model for the symbionts as the actual symbionts have not been obtained in culture.Thiotaurine contains two sulfur atoms, namely the inner sulfone and the outer sulfane sulfur; the latter presents a potential source of reducing equivalents for the symbiont. Nevertheless, we observed no oxidation of thiotaurine when this compound was added to a culture of T. hydrothermalis pre-grown on sulfide. In contrast, when thiotaurine was added to the culture together with an extract of the trophosome of a vestimentiferan tubeworm from the Manus basin, we observed that thiotaurine was oxidised to hypotaurine with concomitant acidification and formation of bacterial biomass. Thus, the trophosome contains an unknown catalytic factor. We suggest that thiotaurine requires reduction prior to oxidation by T. hydrothermalisand that the host may catalyse the conversion of thiotaurine through the glutathione redox couple. This way, the host can accurately control energy delivery (as reduced sulfur) to the symbionts and can therefore control their symbiont biomass.     

Distribution and characteristics of aflatoxin-producingAspergillus flavus in the soil in Kanagawa Prefecture,Central Japan

In Kanagawa Prefecture, located in central Japan, aflatoxin-producingAspergillus flavus was isolated in 4 (2.5%) of 160 field soil samples. In the 4 fields, whose soil contained aflatoxin-producingA. flavus, the annual average temperature of the sampling sites of the soil ranged from 13.8 to 15.1°C. Of all the isolated strains of aflatoxin-producingA. flavus, 4 strains, isolated from a single soil sample, produced large amounts of aflatoxin B₁ and B₂ when incubated in coconut agar, peanut agar, peanuts or trilaurin-added rice, although they did not produce aflatoxin when incubated in rice, yeast extract-sucrose broth or sucrose-low salts broth.     

Two new records of entolomatoid fungi associated with rosaceous plants from Japan

Two entolomatoid species associated with rosaceous plants, Entoloma saepium and E. clypeatum f. hybridum, are reported as new records from Japan, and their morphological characters are described and illustrated.     

Ophiostomatoid fungi associated withIps cembrae in Japan and their pathogenicity of Japanese larch

Six ophiostomatoid fungi, i.e.,Ceratocystiopsis minuta, Ceratocystis laricicola, Ophiostoma brunneo-ciliatum, O. laricis, O. piceae andOphiostoma sp., were isolated from the galleries ofIps cembrae on Japanese Iarch (Larix kaempferi) logs in central Honshu, Japan. Japanese larch trees approximately 30 yr old were inoculated with all six fungi.Ceratocystis laricicola produced the largest lesions on the inner bark around the inoculation point and the largest dry zone in the sapwood. Furthermore,C. laricicola was the only fungus associated withI. cembrae that had the ability to kill Japanese larch, death occurring in 30-yr-old trees within 3.5 mo after inoculation.     

Zn/Pb-tolerant lichens with higher content of secondary metabolites produce less phytochelatins than specimens living in unpolluted habitats

Many lichens can cope with heavy-metal stress, however, the mechanisms of lichen tolerance are still not fully understood. Some lichen secondary metabolites (depsides and depsidones), produced in lichens by the fungal symbiont and accumulated on the outer surface of its hyphae, are supposed to play an important role in the extracellular immoblilization of heavy metals. Lichen photobionts (algal partners in the symbiosis), although surrounded by the mycobiont hyphae, may also accumulate high amounts of trace metals. This can lead to physiological disruptions and morphological damage in algal cells and hence affect the lichen physiological status. We hypothesized that lichen species/specimens living in heavily polluted sites and showing HM tolerance possess a higher content of secondary metabolites than those living in unpolluted sites. Hence, their photobionts can be better protected from the excess of metal ions and need to produce less metal-complexing phytochelatins (PCn) to combat metal toxicity. Specimens of Hypocenomyce scalaris, Cladonia furcata and Lepraria spp. sampled from Zn/Pb-polluted and control sites were compared for the accumulation of Zn/Pb and secondary metabolites, as well as for their production of phytochelatins and glutathione in response to experimental Zn or Pb exposure. Generally, the lichen specimens sampled from the HM-polluted site contained higher amounts of Zn and Pb as well as lichen substances (different depsides and depsidones) than those from the control site. A strong positive correlation was found between the accumulation of secondary metabolites and Zn/Pb accumulation (R² = 0.98 and 0.63, respectively). For the first time, production of phytochelatins (PC_2-3) in response to Zn and Pb (50-200 μM) exposure was found in H. scalaris, L. elobata, L. incana and C. furcata. In both species of Lepraria also cysteine, a substrate for GSH and PCs synthesis was detected. The lichens from the polluted site produced under the same exposure conditions, or in response to higher metal concentrations, lower amounts of PCn than those sampled from the control site. It strongly suggests that less Zn and Pb ions reached the photobiont cells of the lichens containing higher amounts of secondary metabolites (lecanoric, fumarprotocetraric, stictic, constictic acids, antranorin). The results obtained support the putative role of some metabolites in heavy-metal tolerance of the lichens inhabiting metal-polluted habitats.     

Morphological variation and cultural characteristics ofConiothyrium leucospermi associated with leaf spots of proteaceae

During an examination ofConiothyrium collections occurring on Proteaceae one species,C. leucospermi, was repeatedly encountered. However, it was not always possible to identify this species from host material alone, whereas cultural characteristics were found to be instrumental in its identification. Conidium wall ornamentation, which has earlier been accepted as crucial in species delimitation is shown to be variable on host material, making cultural comparisons essential. Using standard culture and incubation conditions,C. leucospermi is demonstrated to have a wide host range in the Proteaceae. In addition, microcyclic conidiation involving yeast-like budding from germinating conidia and hyphae in culture is newly reported for this species.     

Light environment and carbon gain of understory herbs associated with sunflecks in a warm temperate deciduous forest in Japan

Seasonal variation in the light environment on the forest floor of a deciduous forest was investigated with special reference to sunflecks. Diurnal variations and seasonal changes in frequency and irradiation period of the sunflecks (sunfleck duration) were measured. The hourly total sunfleck duration varied seasonally; that is, 30–40 min in spring and autumn and about 15–20 min in summer. There was no large variation in the hourly sunfleck duration during daytime hours (from 9.00 to 15.00 h). The emergence frequency of sunflecks was 1.3–4.8 per h with two peaks, one in the morning and one in the afternoon. The mean duration of a sunfleck, however, showed a characteristic daily pattern with a peak around noon. Sunfleck duration was long around noon, ranging from 12 to 18 min, and short around 10.00 and 14.00 h, ranging from 6 to 10 min. Using the light photosynthesis curves ofPyrola japonica andSyneilesis palmata (Koizumi & Oshima 1985), the contribution of sunflecks to the dry matter production of these understory species was evaluated. It was shown that the sunflecks contributed 7–10% of the carbon gain inS. palmata, but only 2–3% of that inP. japonica.     

Water relations and carbon dioxide exchange of epiphytic lichens in the Namib fog desert

Although there is only negligible rainfall, frequent nocturnal fog, dew and high air humidity support a luxurious lichen vegetation in the coastal zone of the central Namib Desert (Namibia). In earlier publications, we have studied ecophysiological performance of a series of epilithic and terrestrial lichens. Here, we have extended this work to three epiphytic species (Heterodermia namaquana, Ramalina lacera, and Xanthoria turbinata) that inhabit the sparse perennial shrubs growing in this area. Our intention, monitoring lichen CO₂ exchange, their water relations and microclimate conditions, was to determine the functional mechanisms that allow these epiphytes to exist under the special conditions of a fog desert. Measurements were conducted mainly during the spring season.The epiphytic lichens showed response patterns very similar to the epilithic and epigaeic species at the same site. Their metabolism was activated through moistening by dew and/or fog during the night and, in the very early morning, they exhibited the typical brief peak of net photosynthesis (NP) between sunrise and desiccation. The thalli were almost completely dry for the remainder of the day. Average duration of the positive NP during the morning peak was about 3 h. Dew condensation, alone, resulted in activation that provided 58–63% of integrated carbon income (ΣNP) as compared to fog (plus dew). In the late afternoon, there was a tendency for hydration to increase again, due to water vapour uptake at higher air humidity, and this allowed on some days a brief additional period of very low rates of photosynthesis shortly before sunset.Light response of photosynthesis showed “sun-plant” characteristics with saturation around 1000 μmol m⁻² s⁻¹ photosynthetically active photon flux density (PPFD). Light compensation point (LCP) of CO₂ exchange after sunrise was highly dependent on actual water content (WC) for X. turbinata: at low hydration it was ca. 10 μmol m⁻² s⁻¹ PPFD whilst, at high WC, it was almost 80 μmol m⁻² s⁻¹ PPFD. In contrast, LCP of R. lacera was almost independent of WC. This phenomenon was probably due to differences in thallus structure.Maximal attained NP and daily ΣNP both showed a saturation-type response to previous maximal nocturnal WC. Neither parameter was increased substantially when higher maximal thallus WCs were produced by experimental moistening in the night. All three species, despite their different morphologies, performed optimally at the highest nocturnal moistening achieved by natural fog and were not able to make use of higher hydration.The three studied epiphytes were similar in their chlorophyll-related rates of NP. Due to lower chlorophyll content, dry weight and carbon-related NP of X. turbinata was only about one-third of that of the other two species. The average carbon income on days with fog and/or dew hydration during the spring season amounted to 2.4 and 2.1 mgC (gC)⁻¹ day⁻¹ (related to thallus carbon content) for H. namaquana and R. lacera, respectively. This primary production was of similar magnitude to those found for the terrestrial species at the same site.     

Stictis s. lat. (Ostropales, Ascomycota) in northern Scandinavia, with a key and notes on morphological variation in relation to lifestyle

The closely related genera Carestiella, Schizoxylon and Stictis (Stictidaceae, Ostropales, Ascomycota) are revised in northern Scandinavia, and a revised phylogenetic hypothesis, including all seven species of this group in the area, is presented. A key to the species of Stictis s. lat. (including Carestiella, Schizoxylon and Stictis) in Northern Scandinavia is presented. S. albescens and S. confusum are described as new to science, and the new name S. brunnescens is introduced for S. mollis ssp. populorum, when treated as a distinct species. C. socia and S. albescens are the only representatives of their genera in northern Scandinavia, but a total of five species of Stictis are present in the area (S. brunnescens, S. confusum, S. mollis, S. populorum and S. radiata). Substantial within-species variation in ascoma morphology and wall pigmentation is revealed and discussed, and found to correlate with fungal lifestyles; optional lichenization apparently affects several details in fungal anatomy and morphology.     

First records of Pythium aquatile and P. macrosporum isolated from soils in Japan

Pythium aquatile and P. macrosporum were isolated from the soil of a cultivated field in Gunma Prefecture and a forest in Nagano Prefecture for the first time in Japan. Their morphological characteristics are described, and their pathogenicity and taxonomy are discussed.     

Physiological comparison of copper toxicity in the lichens <Emphasis Type="Italic">Peltigera rufescens</Emphasis> (Weis) Humb. and <Emphasis Type="Italic">Cladina arbuscula</Emphasis> subsp. <Emphasis Type="Italic">mitis</Emphasis> (Sandst.) Ruoss

Peltigera rufescens (Weis) Humb. with a prokaryotic photobiont Nostoc sp. and Cladina arbuscula subsp. mitis (Sandst.) Ruoss with a eukaryotic photobiont Trebouxia sp. were studied to determine the copper sensitivity of lichens with different algal symbionts. Samples growing on historic copper mine-spoil heaps at Ľubietová–Podlipa, Slovakia were assessed for physiological parameters, including total and intracellular uptake of copper, assimilation pigmentation, activity of photosystem II, ergosterol levels, thiobarbituric acid reactive substances and water-soluble protein content. Our results indicate that P. rufescens was more sensitive to copper exposure than C. arbuscula subsp. mitis.     

Diversity of nodule-endophytic agrobacteria-like strains associated with different grain legumes in Tunisia

This study represents the first report describing the genetic diversity of nodule-endophytic agrobacteria isolated from diverse legumes and their phylogenetic relationships with the valid species of agrobacteria, as well as the non-recognized genomospecies of the former Agrobacterium tumefaciens (Rhizobium radiobacter). The genetic diversity of a collection of 18 non-nodulating agrobacteria-like strains, previously isolated from root nodules of Vicia faba, Cicer arietinum and Phaseolus vulgaris from different geographical regions of Tunisia, was studied by REP-PCR and PCR-RFLP of the 16S-23S rDNA IGS, as well as by sequence analysis of the 16S rDNA and the housekeeping genes recA and atpD. The aim of the work was to study the genetic diversity of the different isolates and to check for any host-specificity. The results from the different techniques were congruent and suggested a specific interaction for P. vulgaris, whereas no specific endophytic interaction was observed for V. faba and C. arietinum. The phylogenetic analysis clearly indicated that some isolates were affiliated to R. radiobacter or to its non-recognized genomic species (genomovars G2, G4 and G9). However, the other isolates probably constitute new species within Rhizobium (Agrobacterium) and Shinella.     

Patterns of species assemblages and geographical distributions associated with mandible size differences in coastal tiger beetles in Japan

Nine species of tiger beetle (Cicindelidae) occur in coastal habitats in Japan, with two to four species co-occurring at each locality. To examine the patterns of coexistence and geographical distribution, the mandible size of co-occurring species at 17 localities in Japan was examined, based on the assumption that competition for food is an important factor in determining these patterns. The interspecific overlap of mandible length was absent or very low in localities with two or three species, whereas it was more or less evident in localities with four species. For four large coastal species, the geographical distributions of two species with similar mandible lengths are either allopatric or parapatric, whereas those of two species with different mandible lengths largely overlap. These results strongly suggest that size-assortment in mandible length is important in determining species assemblage and distribution in coastal tiger beetles in Japan.An erratum to this article can be found at     

Spatial patterns of Aquificales in deep-sea vents along the Eastern Lau Spreading Center (SW Pacific)

The microbial diversity associated with actively venting deep-sea hydrothermal deposits is tightly connected to the geochemistry of the hydrothermal fluids. Although the dominant members of these deposits drive the structure of the microbial communities, it is less well understood whether the lower abundance groups are as closely connected to the geochemical milieu, or driven perhaps by biotic factors such as microbial community interactions. We used the natural geochemical gradients that exist in the back-arc basin, Eastern Lau Spreading Center and Valu-Fa Ridge (ELSC/VFR) in the Southwestern Pacific, to explore whether the chemolithotrophic Aquificales are influenced by geographical location, host-rock of the vent field or deposit type. Using a combination of cloning, DNA fingerprinting (DGGE) and enrichment culturing approaches, all genera of this order previously described at marine vents were detected, i.e., Desulfurobacterium, Thermovibrio, Aquifex, Hydrogenivirga, Persephonella and Hydrogenothermus. The comparison between clone libraries and DGGE showed similar patterns of distribution of different Aquificales whereas results differed for the enrichment cultures that were retrieved. However, the use of cultivation-based and -independent methods did provide complementary phylogenetic diversity overview of the Aquificales in these systems. Together, this survey revealed that the ELSC/VFR contains some of the largest diversity of Aquificales ever reported at a deep-sea vent area, that the diversity patterns are tied to the geography and geochemistry of the system, and that this geochemical diverse back-arc basin may harbor new members of the Aquificales.     

Flowering time of two saprophytic plants,Monotropa uniflora L. andMonotropastrum humile (D. Don) Hara in Japan

The flowering time of two Japanese saprophytic species,Monotropastrum humile andMonotropa uniflora, was examined. The dependence of flowering time on assumed mean temperature is found to be different between the two species.Monotropa uniflora showed no relationship between assumed mean temperature and its flowering time, whileMonotropastrum humile showed a tight correlation.     

Phenotypic and genetic characterization of rhizobia associated with alfalfa in the Hokkaido and Ishigaki regions of Japan

Twenty five rhizobial isolates were obtained from root nodules of Medicago sativa inoculated with soil samples collected from the Sapporo region and Ishigaki Island in Japan. To study their diversity and characterize them in relation to the climatic conditions of their soils of origin, a polyphasic approach analyzing stress tolerance, symbiotic and genetic properties was used. Stress tolerance assays revealed marked variations in salinity, pH and temperature tolerance. Isolates originating from a sub-tropical climate in alkaline soil (Ishigaki Island) tolerated high temperature, salinity and pH levels. Moreover, isolates recovered from a temperate climate in acidic soil (Sapporo) were sensitive to high temperature and salinity, and tolerated acidic pH. Phylogenetic analysis of conserved 16S rRNA and recA genes, and symbiotic nodA and nifDK revealed 25 isolates to be closely related to Ensifer meliloti. Furthermore, the branch patterns of phylogenetic trees constructed from different genes revealed the existence of at least two E. meliloti types in the soils studied. These results may be relevant to programs directed towards improving crop productivity through biofertilization with locally adapted and genetically defined strains.     

Virus-like particles in Eimeria tenella are associated with multiple RNA segments

Total nucleic acids from sporulated oocysts of Eimeria tenella isolated from Changchun in China were found to contain three extrachromosomal double-stranded RNA segments (dsRNAs) of 1.4, 2.4 and 3.6 kb in sizes. These RNAs were resistant to RNase A digestion under high salt concentration (0.3 M NaCl). RNA-dependent RNA polymerase (RDRP) activity was detected in crude extracts of E. tenella sporulated oocysts containing these nucleic acid species. Virus-like particles (VLPs) were shown to have a diameter of approximately 38 nm under Electron Microscopy (EM) after purification by sucrose density gradient centrifugation. In keeping with the nomenclature generally adopted for protozoan viruses, we have named this isolate as E. tenella virus (ETV) which is the first virus isolated from E. tenella.     

A new species ofPlagiostoma (Ascomycota-diaporthales) with aPhomopsis anamorph isolated fromPhragmites leaves in Japan

A new ascomycete species,Plagiostoma phragmiticola inhabiting two reed plants,Phragmites australis andP. karka, is described and illustrated. This new species is characterized by having non-stromatic, solitary perithecia, laterally and obliquely protruding perithecial beaks, and relatively small asci and ascospores. Black zone-lines in colonized leaf tissues were not observed. Its anamorph belongs toPhomopsis.