大蒜植物络合素合酶基因转化对酵母重金属抗性的提高

重金属污染是全球面临的亟待解决的生态问题。利用植物对重金属的富集作用来清除环境重金属污染即植物修复已成为重要的环境生物技术之一。这一技术的长远发展有赖于在重金属富集或耐受中起关键作用的基因的克隆和应用。植物络合素是植物体内一类重要的对重金属起螯合作用的多肽, 其合成受植物络合素合酶的催化。该文取得了如下研究结果:1)通过原子吸收测定表明,在大蒜(Allium sativum)的根部可以积累3 000 mg·kg^-1的重金属镉;2)将克隆的大蒜植物络合素合酶基因(AsPCS)置于酵母表达启动子之下,构建酵母表达载体,并将其分别转入了因CUP1和acr3基因缺失而对重金属镉和砷敏感的酵母突变体菌株后,发现来自大蒜的AsPCS基因的表达使酵母CUP1缺失菌株对镉的耐受性提高了4倍, acr3缺失菌株对砷的耐受性提高了两倍;3)表达AsPCS基因酵母的生长模式证实了AsPCS基因的表达是酵母对重金属耐受性提高的原因。这些结果暗示, 大蒜植物络合素合酶基因在大蒜对重金属的抗性及大蒜根部对镉的积累中起关键作用,可作为重要的基因元件应用到修复污染的植物基因工程中。     

生物体的抗砷基因

砷在自然界分布广泛,主要以砷化物的形式存在,具有较强毒性。生物体在进化的过程中,长期暴露于含砷的环境．从低等生物到高等生物都产生了不同程度的抗砷性,具有相应的基因介导了对抗砷毒的机制。该文介绍抗砷基因及其抗砷机制,并对抗砷基因的研究前景作一展望。     

紫色非硫细菌的砷代谢机制

[目的]系统阐述紫色非硫细菌(PNSB)砷代谢机制和砷代谢基因簇的进化关系.[方法]通过生物信息学方法分析了PNSB砷代谢基因簇的分布、组成、排布方式.采用UV-Vis和HPLC-ICP-MS方法,研究了3个PNSB种类对砷的抗性、砷形态及价态的转化、砷在细胞中的积累和分布以及磷酸盐对As细胞毒性的影响.[结果]砷基因簇分析表明:已公布全基因组序列的17个PNSB菌株基因组中均含有以ars operon为核心的砷代谢基因簇,由1-4个操纵子组成,主要含有与细胞质砷还原和砷甲基化代谢相关的基因,但基因的组成和排列方式因种和菌株而异,尤其是arsM和两类进化来源不同的arsC.实验结果表明:光照厌氧条件下,3个PNSB种类对As(V)和As(Ⅲ)均具有抗性,As(V)和As(Ⅲ)均能进入细胞 ;在胞内As(V)能够还原为As(Ⅲ)并被排出胞外,但不能将As(Ⅲ)氧化为As(V),也未检测到甲基砷化物 ;磷酸盐浓度升高,能够抑制As(V)进入细胞,降低As(V)对细胞的毒性,而不能抑制As(Ⅲ)进入细胞.[结论]PNSB砷代谢机制主体为细胞质As(V)还原,也还有砷甲基化途径.通过对砷代谢基因簇结构多样性特点和进化方式分析,提出了与Rosen不同的ars operon进化途径.这对深入开展PNSB砷代谢和基因之间的相互作用研究奠定基础.     

酵母基因中断技术

酵母基因中断技术是研究酵母基因功能的重要手段,自80年代初诞生以来经历了不断的改进和发展.PCR介导的酵母基因中断技术,大大简化了操作,实现了酵母基因的精确缺失;酵母基因的多重中断技术,可在酵母内实现多个基因的中断;可进行大规模基因中断和功能分析的酵母基因中断技术,适应了在酵母全基因组测序完成的情况下进行功能基因组学研究的要求.酵母基因中断技术对人类基因功能研究也有很大启示作用.     

毕赤酵母己糖运载体HXTl基因缺失菌株的构建

葡萄糖在酵母胞内的转运是依靠己糖运载体家族成员完成的.目前在酿酒酵母中已鉴定了18个己糖运载体基因,各自功能也已得到深入的研究.然而在作为优良蛋白表达系统的毕赤酵母中,目前国内外尚未有此类基因的相关报道.本文基于酵母同源重组率高的特性,以G418作为抗性筛选标记,分别在其5'和3'端连接待缺失毕赤酵母基因HXTl开放阅读框ORF的上下游各200 bp作为同源重组区,电转毕赤酵母GS115感受态,通过不同浓度G418抗性平板筛选,最终得到了HXTl基因缺失的毕赤酵母菌株GS115AHXTl.通过与野生株比较发现,HXTl基因缺失株的生长状况及葡萄糖利用都有所下降.     

酵母基因中断技术

酵母基因中断技术是研究酵母基因功能的重要手段，自80年代初诞生以来经历了不断的改进和发展.PCR介导的酵母基因中断技术，大大简化了操作，实现了酵母基因的精确缺失；酵母基因的多重中断技术，可在酵母内实现多个基因的中断；可进行大规模基因中断和功能分析的酵母基因中断技术，适应了在酵母全基因组测序完成的情况下进行功能基因组学研究的要求.酵母基因中断技术对人类基因功能研究也有很大启示作用.     

酵母SOD1基因缺失突变体应答刚果红胁迫的转录组学分析（英文）

SOD1基因编码的铜锌超氧化物歧化酶是酵母细胞中最重要的抗氧化酶.前期研究发现,SOD1基因缺失(sod1Δ)导致酵母细胞对真菌细胞壁抑制剂刚果红(Congo red,CR)的敏感性增加,提示细胞抗氧化能力与细胞壁稳定性相关.本研究采用酵母全基因组表达谱芯片,比较了CR胁迫条件下,野生型酵母细胞和sod1Δ酵母细胞的转录表达谱.结果表明,与野生型酵母细胞相比,sod1Δ酵母细胞中260个基因发生了显著差异表达(140个基因表达上调、120个基因表达下调).随机选取12个差异表达基因采用定量PCR验证,结果与芯片分析结果一致.差异表达基因功能主要涉及细胞壁(几丁质合成)、细胞代谢、细胞防御(抗氧化和热冲击蛋白)、蛋白质合成以及大量功能未知基因.进一步研究发现,CR处理后,细胞壁几丁质含量和细胞内氧化应激指标丙二醛(MDA)含量在sod1Δ酵母细胞中显著升高,而在野生型酵母细胞中无明显变化,与芯片筛选差异表达基因的生物学功能分析结果一致.本研究提供了在全基因组水平上对SOD1基因与细胞壁应激反应之间关联的新认识.     

PHO80、PHO85基因和芽殖酵母金属离子耐受

PHO8 5基因是芽殖酵母中的一个多功能基因。它参与了无机磷酸的代谢、碳源利用、糖原积累、特定蛋白质的降解和细胞周期调控。研究了酵母株YPH499及其衍生的pho85缺失株、pho80缺失株、pap1(pcl7)缺失株在不同浓度的不同金属离子中的存活情况 ,结果表明和芽殖酵母YPH499相比 ,pho85缺失株和pho80缺失株表现出对K 、Mg2 、Zn2 、Ca2 和Mn2 的耐受下降 ,而PAP1基因的缺失则不会导致芽殖酵母对上述金属离子的敏感性的变化 ;而对Cu2 ,3株突变株都表现出和YPH499相同的耐受性。同时测定了各缺失株和YPH499对上述金属离子的半致死浓度以及pho85缺失株、pho80缺失株和YPH499的细胞内总钙量。这些结果显示 ,PHO85蛋白激酶通过和它的PCLPHO80而不是PAP1结合 ,参与了芽殖酵母K 、Mg2 、Zn2 、Ca2 和Mn2 离子平衡的调控。PHO85和PHO80基因的缺失损害了芽殖酵母钙的储存。     

酵母SOD1基因缺失突变体应答刚果红胁迫的转录组学分析

SOD1基因编码的铜锌超氧化物歧化酶是酵母细胞中最重要的抗氧化酶. 前期研究发现,SOD1基因缺失(sod1Δ)导致酵母细胞对真菌细胞壁抑制剂刚果红(Congo red, CR)的敏感性增加,提示细胞抗氧化能力与细胞壁稳定性相关. 本研究采用酵母全基因组表达谱芯片,比较了CR胁迫条件下,野生型酵母细胞和sod1Δ酵母细胞的转录表达谱. 结果表明,与野生型酵母细胞相比,sod1Δ酵母细胞中260个基因发生了显著差异表达(140个基因表达上调、120个基因表达下调). 随机选取12个差异表达基因采用定量PCR验证,结果与芯片分析结果一致. 差异表达基因功能主要涉及细胞壁(几丁质合成)、细胞代谢、细胞防御(抗氧化和热冲击蛋白)、蛋白质合成以及大量功能未知基因. 进一步研究发现,CR处理后,细胞壁几丁质含量和细胞内氧化应激指标丙二醛(MDA)含量在sod1Δ酵母细胞中显著升高,而在野生型酵母细胞中无明显变化,与芯片筛选差异表达基因的生物学功能分析结果一致. 本研究提供了在全基因组水平上对SOD1基因与细胞壁应激反应之间关联的新认识.     

FLO1基因内重复序列对酿酒酵母絮凝能力及稳定性的影响

[目的]了解絮凝基因FLO1中重复DNA序列A对酵母菌絮凝能力及其遗传稳定性的影响,为构建遗传性能稳定、工业应用前景优良的最小絮凝功能基因奠定理论基础.[方法]通过融合PCR方法构建了FLO1中全部重复DNA序列A发生缺失的衍生基因FLO1a,以含有FLO1基因的大肠杆菌为筛选模型,通过连续传代培养及质粒快速分析获得FLO1内重复DNA序列A不同程度、不同位点缺失的系列衍生基因FLO1a1 -FL01a5.完整FLO1基因和上述衍生基因转化非絮凝型酵母YS58,得到重组菌株YSF1、YSF1a及YSF1a1 -YSF1a5,分析了上述不同酵母菌株絮凝特性及其遗传稳定性.[结果]絮凝基因FLO1中重复DNA序列A完全缺失使酵母细胞完全失去絮凝能力,部分重复DNA序列A发生缺失导致絮凝能力降低,絮凝基因中重复DNA序列A的个数与细胞絮凝能力成正相关,但不是简单的比例关系.其中衍生基因FLO1a3含有的重复DNA序列A是FLO1基因的33.3％,但菌株YSF1 a3的絮凝能力可达YSF1絮凝能力的71.4％.而且菌株YSF1 a3的絮凝特性比菌株YSF1的絮凝特性具有更好的环境适应性和遗传稳定性.[结论]重复DNA序列A是絮凝基因中非常活跃的序列,是导致絮凝特性遗传不稳定的关键因素,该序列的部分缺失不但可以使酵母细胞呈现适度的絮凝能力,而且使絮凝特性具有更好的环境适应性和遗传稳定性.该研究为通过对絮凝基因内衔接重复序列的合理调控,促进酵母絮凝特性在发酵工业及其他生物化工过程和环境修复中的广泛应用提供了重要的理论依据和解决策略.     

Insight into the selectivity of arsenic trioxide for acute promyelocytic leukemia cells by characterizing Saccharomyces cerevisiae deletion strains that are sensitive or resistant to the metalloid

The genome-wide set of Saccharomyces cerevisiae deletion strains provides the opportunity to analyze how other organisms may respond to toxic agents. Since arsenic trioxide selectively kills human acute promyelocytic leukemia (APL) cells by a poorly understood mechanism we screened the yeast deletion strains for sensitivity or resistance. In addition to confirming mutants previously identified as sensitive to sodium arsenite, a large number of additional genes, and cellular processes, were required for arsenic trioxide tolerance. Of the 4546 mutants, 7.6% were more sensitive to arsenic trioxide than the wild type, while 1.5% was more resistant. IC50 values for all sensitive and resistant mutants were determined. Prominent as sensitive was that missing the MAP kinase, Hog1. The most resistant lacked the plasma-membrane glycerol and arsenite transporter, Fps1. Hog1 and Fps1 control the response to osmotic stress in yeast by regulating glycerol production and plasma membrane flux, respectively. We therefore tested whether APL cells have impaired osmoregulation. The APL cell line NB4 did not produce glycerol in response to osmotic stress and underwent apoptotic cell death. Moreover, the glycerol content of NB4 and differentiated NB4 cells correlated with the level of arsenic trioxide uptake and the sensitivity of the cells. Additionally, NB4 cells accumulated more arsenic trioxide than non-APL cells and were more sensitive. These findings demonstrate the usefulness of the S. cerevisiae deletion set and show that the selectivity of arsenic trioxide for APL cells relates, at least in part, to impaired osmoregulation and control of uptake of the drug.     

Identification of Saccharomyces cerevisiae ribosomal protein L3 as a target of curvularol, a G1-specific inhibitor of mammalian cells

The cellular target of curvularol, a G1-specific cell-cycle inhibitor of mammalian cells, was identified by a genetic approach in Saccharomyces cerevisiae. Since the wild-type W303 strain was highly resistant to curvularol, a drug hypersensitive parental strain was constructed in which various genes implicated in general drug resistance had been disrupted. Curvularol resistant mutants were isolated, and strains that exhibited a semi-dominant, curvularol-specific resistance phenotype were selected. All five strains examined were classified into a single genetic complementation group designated YCR1. A mutant gene responsible for curvularol resistance was identified as an allele of the RPL3 gene encoding the ribosomal protein L3. Sequence analysis of the mutant genes revealed that Trp255Cys and Trp255Leu substitutions of Rpl3p are responsible for curvularol resistance. Rpl3p mutants in which Trp255 residue was replaced by other amino acids were constructed. All of these replacements led to varying degrees of increased resistance to curvularol and growth defects.     

Osmotic stress limits arsenic hypertolerance in Aspergillus sp. P37

Aspergillus sp. P37 is an arsenate-resistant fungus isolated from a river with a long history of heavy metal contamination. Its hypertolerant mechanism relies on an efficient arsenate reduction system in conjunction with increased coupling capabilities to glutathione and translocation of these complexes into the vacuolar system. Here, the comparison of arsenic resistance in two Aspergillus species and Saccharomyces cerevisiae in the presence or absence of different osmolytes revealed a link between tolerance to osmotic stress and tolerance to arsenic in Aspergillus strains. Under osmotic stress generated by NaCl or KCl, both Aspergillus strains were less resistant to arsenite and arsenate. In the presence of sorbitol, Aspergillus strains were more resistant to arsenite. Intracellular accumulation of arsenic was affected by the presence of the osmolytes (NaCl or sorbitol), suggesting a major role for vacuoles in the detoxification of arsenic in Aspergillus.     

An arsenate-activated glutaredoxin from the arsenic hyperaccumulator fern Pteris vittata L. regulates intracellular arsenite

To elucidate the mechanisms of arsenic resistance in the arsenic hyperaccumulator fern Pteris vittata L., a cDNA for a glutaredoxin (Grx) Pv5-6 was isolated from a frond expression cDNA library based on the ability of the cDNA to increase arsenic resistance in Escherichia coli. The deduced amino acid sequence of Pv5-6 showed high homology with an Arabidopsis chloroplastic Grx and contained two CXXS putative catalytic motifs. Purified recombinant Pv5-6 exhibited glutaredoxin activity that was increased 1.6-fold by 10 mm arsenate. Site-specific mutation of Cys(67) to Ala(67) resulted in the loss of both GRX activity and arsenic resistance. PvGrx5 was expressed in E. coli mutants in which the arsenic resistance genes of the ars operon were deleted (strain AW3110), a deletion of the gene for the ArsC arsenate reductase (strain WC3110), and a strain in which the ars operon was deleted and the gene for the GlpF aquaglyceroporin was disrupted (strain OSBR1). Expression of PvGrx5 increased arsenic tolerance in strains AW3110 and WC3110, but not in OSBR1, suggesting that PvGrx5 had a role in cellular arsenic resistance independent of the ars operon genes but dependent on GlpF. AW3110 cells expressing PvGrx5 had significantly lower levels of arsenite when compared with vector controls when cultured in medium containing 2.5 mm arsenate. Our results are consistent with PvGrx5 having a role in regulating intracellular arsenite levels, by either directly or indirectly modulating the aquaglyceroporin. To our knowledge, PvGrx5 is the first plant Grx implicated in arsenic metabolism.     

Supersensitivity to levorin and amphotericin B in several Saccharomyces cerevisiae mutants resistant to nystatin]

104 mutants resistant to nystatin were isolated after UV-treatment of two haploid marked strains of Saccharomyces cerevisiae. The analysis of resistance to three polyene antibiotics allowed to determine 8 phenotype classes of mutants including those resistant to nystatin but in various combinations showing hypersensitivity to levorin and (or) amphotericin B. The analysis of UV absorption spectra of sterolic extracts prepared from cells of different mutants showed that similar quality changes in sterol composition could be associated both with polyresistant an supersensitive phenotype. New type of mutants resistant to nystatin and supersensitive to levorin and (or) amphotericin B seems to be promising for studies on the mechanisms of action of polyene antibiotics, the bases of resistance to them and also in consideration of the possibility to increase the efficiency of antimycotic antibiotic therapy.     

大肠杆菌CM/PDT抗反馈抑制突变体的构建及其性质

为了获得具有高催化活性且抗反馈抑制的大肠杆菌分支酸变位酶 预苯酸脱水酶 (chorismatemutase prephenatedehydrataseCM PDT) [EC5 .4 .99.5 EC4 .2 .1.5 1],通过相关菌种CM PDT氨基酸序列同源比较 ,寻找高度保守位点 .用定点突变及PCR法构建突变酶M1(缺失 30 4T、30 5G、Q30 6K)、M2 (缺失W 338)、M3(缺失 30 1～ 386位氨基酸 )、M32 9(E32 9A)和M374 (C374A) ,野生型及各突变型基因与pET2 8a(+ )载体连接后 ,表达融合蛋白 .在非变性条件下 ,由TALON金属螯合亲和层析柱纯化野生型和突变体的酶蛋白 .酶活性测定表明 ,突变体M3的PDT活性下降为野生型活性的 2 9% ,但保持了CM活性 .突变体M374保持了CM ,PDT两种酶的活性 ,突变体M1、M2、M32 9的CM ,PDT活性有一定程度的提高 .酶抗反馈抑制作用检测表明 ,突变体M3、M374解除了苯丙氨酸的反馈抑制作用 ,M1、M2、M32 9部分解除了苯丙氨酸的反馈抑制作用 .与含野生型pheA基因的E .coliBL2 1菌株相比 ,含突变基因的E .coliBL2 1菌株对 10mmol L的苯丙氨酸代谢类似物具有强的抗反馈抑制作用 ,其中M1,M2 ,M3对 2 0mmol L的类似物具有抗反馈抑制作用     

A Saccharomyces cerevisiae genome-wide mutant screen for altered sensitivity to K1 killer toxin

Using the set of Saccharomyces cerevisiae mutants individually deleted for 5718 yeast genes, we screened for altered sensitivity to the antifungal protein, K1 killer toxin, that binds to a cell wall beta-glucan receptor and subsequently forms lethal pores in the plasma membrane. Mutations in 268 genes, including 42 in genes of unknown function, had a phenotype, often mild, with 186 showing resistance and 82 hypersensitivity compared to wild type. Only 15 of these genes were previously known to cause a toxin phenotype when mutated. Mutants for 144 genes were analyzed for alkali-soluble beta-glucan levels; 63 showed alterations. Further, mutants for 118 genes with altered toxin sensitivity were screened for SDS, hygromycin B, and calcofluor white sensitivity as indicators of cell surface defects; 88 showed some additional defect. There is a markedly nonrandom functional distribution of the mutants. Many genes affect specific areas of cellular activity, including cell wall glucan and mannoprotein synthesis, secretory pathway trafficking, lipid and sterol biosynthesis, and cell surface signal transduction, and offer new insights into these processes and their integration.     

Screening of a Saccharomyces cerevisiae nonessential gene deletion collection for altered susceptibility to a killer peptide

Approximately 4,800 Saccharomyces cerevisiae mutants deleted for nonessential genes were screened for alterations in susceptibility to a synthetic killer peptide (KP). None of the tested strains, including mutants resistant to conventional antifungal drugs, showed increased or decreased susceptibility to KP in comparison with the parental strain. The results may reflect the peculiar mechanism of action of KP and claim the possible avoidance of vital resistant mutants.     

烟曲霉sho1、pbs2基因额外拷贝对几种应激能力的影响

目的构建烟曲霉额外拷贝菌株,了解额外拷贝烟曲霉sho 1、pbs 2基因能否增强菌株对高渗透压、过氧化氢(H2O2)、碱性pH、刚果红应激的抵抗能力,探讨HOG通路(high osmolarity glycerol pathway)参与的应激反应。方法用原生质体法构建分别含有烟曲霉sho 1、pbs 2基因的额外拷贝菌株,采用Real-time PCR方法检测额外拷贝株中sho 1、pbs 2的表达情况。观察并比较缺陷株、额外拷贝株对NaCl(1 mol/L)、H2O2(5 mmol/L)、刚果红(400 mg/L)及碱性pH(10.0)应激的反应。结果获得了含有烟曲霉sho 1、pbs 2基因的额外拷贝菌株MCsho1、MCpbs2,和含空白质粒的对照株Empty。额外拷贝株sho 1、pbs 2的表达水平增高,对NaCl(1 mol/L)、H2O2(5 mmol/L)、刚果红(400 mg/L)、碱性pH(10.0)应激的抵抗强于Empty。MCpbs2对这些应激的抵抗较MCsho1更显著。烟曲霉缺陷株△sho 1、△pbs 2对NaCl(1 mol/L)、H2O2(5mmol/L)、碱性pH(10.0)的敏感性高于野生株AF293。△sho 1对刚果红(400 mg/L)的敏感性高于野生株,△pbs 2对刚果红的敏感性与野生株比,无显著差别。结论额外拷贝烟曲霉sho 1或pbs 2基因能增强菌株对高渗透压、氧化压力、刚果红、碱性pH应激的抵抗能力。