Carabid larvae as predators of weed seeds: granivory in larvae of Amara eurynota (Coleoptera: Carabidae)

Up to date we do not have much information about predation on seeds by larvae of ground beetles. One of the reasons why such knowledge is important is that granivorous larvae contribute to predation of weed seeds. In this study, the food requirements of larvae of autumn breeding carabid species Amara eurynota (Panzer) were investigated in the laboratory and a hypothesis, that they are granivorous was tested. Insect diet (Tenebrio molitor larvae), three seed diets (seeds of Artemisia vulgaris, Tripleurospermum inodorum or Urtica dioica or a mixed diet (T. molitor + A. uulgaris) were used as food. For larvae of A. eurynota, seeds are essential for successful completion of development, because all those fed pure insect diet died before pupation. However, differences in suitability were observed between pure seed diets. Larvae fed seeds of A. vulgaris had the lowest mortality and fastest development of the seed diets. Those fed seeds of T. inodorum had also low mortality, but the development was prolonged in the third instar. In contrast, development of larvae reared on seeds of U. dioica was slowest of the tested diets and could not be completed, as all individuals died before pupation. When insects were included to seed diet of A. vulgaris (mixed diet), the duration of development shortened, but mortality remained the same when compared to seed diet of A. vulgaris. According to the results it was concluded that larvae of A. eurynota are granivorous. A mixed diet and seed diets of A. uulgaris and T. inodorum were suitable and insect diet and seeds of U. dioica were unsuitable diets in this experiment.     

The Effects of Seasonal Flooding on Seed Availability for Spring Migrating Waterfowl

Abstract: We hypothesized the seed biomass available to migrating waterfowl would be higher in spring- versus fall-flooded wetlands. To test this hypothesis we conducted an experiment using 5 pairs of wetland impoundments in northern Missouri, USA (2000-2002). We strategically assigned one impoundment of each pair to either a fall or spring treatment group. We estimated seed biomass in fall and in spring by clipping seed heads and collecting soil cores at 20 random locations within each impoundment. We placed exclosures near each fall sample site in spring-flooded impoundments to estimate seed loss from granivorous birds and rodents. Despite similar biomass in fall between treatments (P = 0.64), overwinter seed loss was greater in fall-flooded (79%; 1,324 ± 195 kg/ha) than in spring-flooded (31%; 653 6 130 kg/ha) impoundments (P = 0.009). Considering barnyard grass or millet (Echinochloa spp.) only, seed loss was higher in fall-flooded than in spring-flooded impoundments (P = 0.05). Spring biomass estimates were similar inside versus outside exclosures (P = 0.63) indicating loss to granivorous birds and rodents was limited. Our results suggest that fall flooding reduces seed availability for spring migrating waterfowl. We recommend spring flooding be used in areas where impoundment water levels can be manipulated to increase seed availability for spring migrating waterfowl.     

Food preferences and the value of animal food for the carabid beetle Amara similata (Gyll.) (Col., Carabidae)

Abstract:  Several studies have shown that the mainly granivorous carabid beetles, e.g. Amara spp., include animal food in their diet to a considerable extent. We therefore hypothesized that the performance of these beetles would be enhanced by dietary mixing including both seeds and animal food. In order to test this, we conducted laboratory feeding experiments with adults and larvae of Amara similata . Both adults and larvae were subjected to different diet treatments including: seeds, houseflies, grasshoppers, earthworms, slugs and snails in pure and mixed diets. Larval survival, development time, pupal and teneral weights were used as indicators of food quality for the larvae. For the adult beetles, mass change was used as an indicator of food quality. We found seeds to be high-quality food, while all pure animal diets were of low quality for both adults and larvae. Animal foods added to the seed diet had both positive and negative effects. A mixed diet of all foods enhanced the mass gain of adults compared with the seed diet, but reduced larval performance dramatically. Earthworms and grasshoppers added to seeds increased the pupal and teneral weights, while reduced larval survival. Thus, A. similata is omnivorous with a mainly granivorous feeding habit. It may gain benefits on some fitness parameters and incur costs on others from preying or scavenging on animal food. Therefore, the overall fitness consequences of a mixed seed-animal diet are uncertain.     

The significance of seed food in chick development re‐evaluated by tracking day‐to‐day dietary variation in the nestlings of a granivorous passerine

The dietary adjustment of nestlings of granivorous birds to a seed diet and the different morphological characteristics of ingested food have rarely been examined in natural conditions. It has been suggested that the provision of cereal grains to nestlings of some seed‐eating bird species in modern agroecosytems is the result of poor food conditions after agricultural intensification. We analysed the abundance of invertebrate prey in the main foraging habitat of parent birds, daily changes (from hatching to fledging) in the efficiency of cereal seed digestion, and the dietary characteristics, diet composition and prey type delivered to nestlings of the Yellowhammer Emberiza citrinella. Analysis of faecal sacs from nests located in breeding habitat with an abundant invertebrate fauna revealed no relationship between the proportion of cereal seeds in the diet of nestlings and the food supply in the main foraging sites of the parents. Neonate nestlings (1 day old) exclusively received weakly chitinized invertebrate prey (arachnids and flies), but from the second day of life the nestlings were fed a variety of highly chitinized invertebrate prey, the percentage biomass of which did not change for the remainder of the nesting period. Cereal grains started to be delivered to 3‐day‐old nestlings and were already efficiently digested, and the percentage biomass of this food type increased progressively with nestling age. We suggest that the provisioning of cereal grains to nestlings is not forced by external factors, such as modern agricultural intensification; rather, it is an intentional behaviour of parent birds aimed at achieving physiological adjustment to seed food in the early stages of ontogeny.     

Diet of Adult and Nestling Scarlet Macaws in Southwest Belize,Central America1

Scarlet Macaw diet was determined during the breeding season of February–June 1998. Macaws were primarily granivorous, exhibiting a narrow diet during the dry season, with low variety of food items in adult and nestling diets. Seeds of Cnidoscolus spp. and Schizolobium parahybum, tree species characteristic of floodplain forest, were predominant in nestling diets, and may provide protein‐rich food resources. River floodplains provided important nest sites and food resources for Scarlet Macaws during the breeding season.     

Food resource availability for American black ducks wintering in southern New Jersey

Midwinter waterfowl survey data indicates a long-term decline in the number of wintering American black ducks (Anas rubripes), potentially due to habitat limitations. In order for future estimates of carrying capacity to be determined, it is critical that regional food availability is estimated. We collected pairs of habitat core samples (n = 510) from 5 habitat types in southern New Jersey, USA, during October, January, and April 2006–2008 to estimate resource availability and variability. We collected upper gastrointestinal tracts from hunter-killed birds (n = 45) and late season collections (n = 19) to identify food items and limited our estimates of resource availability to only winter food items; thereby reducing the availability of seed foods found in our core samples by 38% and animal foods by 96%. We did not detect differences in years or sampling period, but did between habitat types. Mudflat habitat had the greatest availability of invertebrate and vertebrate food items and appeared to supply the bulk of energy to black ducks wintering in southern New Jersey. We suggest conservation efforts to be focused on restoring or enhancing mudflat habitat as an integral component of an ecologically functioning salt marsh to increase food availability. © 2011 The Wildlife Society.     

The Value of Measuring Food Availability on the Ground for a Semiterrestrial Frugivore, the Tana River Mangabey (Cercocebus galeritus) of Kenya

Collecting phenological data, seasonal availability of plant resources that primates feed on, allows us to understand feeding ecology better. A number of primates are terrestrial or semiterrestrial frugivores, yet phenology is generally measured only in the canopy. I hypothesized that combining measurements of food availability on the ground with canopy measurements would more strongly correlate with diet than canopy measurements alone for a semiterrestrial frugivore, the Tana River mangabey (Cercocebus galeritus). From July 2005 until June 2006, I conducted monthly follows on a mangabey group. Phenology was measured in 105 individuals of their top seven food tree species. I measured canopy phenology on a 0–5 scale and counted fruits in three 1 m³ areas of the canopy, and measured ground phenology by counting fruits and seeds in four 1 m² quadrats under the canopy. I calculated each tree’s canopy volume and canopy shadow, and each species’ mean fruit weight, mean seed weight, and density. Monthly biomasses were calculated as kilograms per hectare. Spearman correlations were performed between diet contribution and canopy biomass, ground biomass, and total biomass. The hypothesis was not supported for seven species individually or combined. The hypothesis was supported for 3 of 12 diet items, although canopy biomass was also significant for 2 of those items. Two diet items correlated only with ground biomass. Studies of the Tana River mangabey may benefit from measuring ground phenology only for those items eaten exclusively on the ground. Primatologists studying terrestrial or semiterrestrial frugivores should consider feeding height when deciding on phenology methods.     

NOTES ON THE BREEDING BEHAVIOUR OF THE PARADISE FLYCATCHER (TERPSIPHONE VIRIDIS PLUMBEICEPS)

Milewski, A. V. 1978. Diet of Serinus species in the southwestern Cape, with special reference to the Protea Seedeater. Ostrich 49:174-184.

The diet of the Protea Seedeater Serinus leucopterus was assessed by opportunistic observation of feeding occasions throughout the distribution of the bird. The Protea Seedeater feeds mainly on seed of a wide range of plant species. It takes the large seed of Proteo more frequently than it does any other food item. The diet of the Protea Seedeater consists essentially of food items and types similar to those taken by six sympatric and partly sympatric congeners, which are also mainly dating. However, its diet differs quantitatively, each species taking different food types, such as achenes and seed kernels, with different frequency.     

Post-dispersal seed predation of three grassland species in a plant diversity experiment

Aims Post-dispersal seed predation is an important ecosystem process because it can influence the seed's fate after the initial dispersal from the mother plant and subsequently transform communities. Even at small scales, post-dispersal seed predation can vary greatly depending on seed identity, granivorous taxa or microhabitat structure. However, little is known about the role of plant species richness and functional group richness in post-dispersal seed predation. The overall aim of this study was to test whether increasing plant species richness or plant functional group richness affects the rate and variability of post-dispersal seed predation. We additionally investigated the influence of vegetation structure and seed species identity on the rate and variability of post-dispersal seed predation and whether the influence of different granivorous taxa changed with increasing plant species richness.Methods We conducted seed removal experiments along a long-term experimental plant diversity gradient, comprising plots with monocultures to 60 species mixtures of common grassland species in Jena, Germany, in August 2011. We studied seeds of Onobrychis viciifolia, Pastinaca sativa and Trifolium pratense in exclusion experiments (seed cafeterias), an experimental setup that allowed access either for arthropods or slugs or for all granivorous taxa. Traditionally, seeds removed from seed cafeterias were classified as consumed but we used traceable fluorescent-coloured seeds to obtain more accurate predation rates by subtracting recovered seeds from overall removed seeds. The effect of multiple vegetation variables on mean and variability of seed predation rates was analysed using generalized mixed-effect models and linear regressions, respectively.Important findings Rates of recovered seeds were low but contributed to significant differences between seed predation rates and removal rates of seeds in some treatments. Seed predation rates were not directly correlated with increasing plant species richness or plant functional group richness but were influenced byseed species identity and granivorous taxa. Vegetation variables such as vegetation height and cover were significantly associated with seed predation rates. Depending on the seed species and/or the granivorous taxa, different vegetation variables correlated with seed predation rates. Our results indicate that effects of plant functional group richness and multiple vegetation variables on the magnitude of post-dispersal seed predation varied with seed identity and seed predator taxa. A direct effect of plant species and plant functional group richness could be shown on the variability of post-dispersal seed predation for some seed species and their respective predators. Thus, the changes in magnitude of post-dispersal seed predation with increasing plant species richness could potentially impact the fitness of some plant species and thereby influence plant community structure.     

Towards next-generation biodiversity assessment using DNA metabarcoding

Virtually all empirical ecological studies require species identification during data collection. DNA metabarcoding refers to the automated identification of multiple species from a single bulk sample containing entire organisms or from a single environmental sample containing degraded DNA (soil, water, faeces, etc.). It can be implemented for both modern and ancient environmental samples. The availability of next-generation sequencing platforms and the ecologists' need for high-throughput taxon identification have facilitated the emergence of DNA metabarcoding. The potential power of DNA metabarcoding as it is implemented today is limited mainly by its dependency on PCR and by the considerable investment needed to build comprehensive taxonomic reference libraries. Further developments associated with the impressive progress in DNA sequencing will eliminate the currently required DNA amplification step, and comprehensive taxonomic reference libraries composed of whole organellar genomes and repetitive ribosomal nuclear DNA can be built based on the well-curated DNA extract collections maintained by standardized barcoding initiatives. The near-term future of DNA metabarcoding has an enormous potential to boost data acquisition in biodiversity research.     

The Hemiptera (Insecta) of Canada: Constructing a Reference Library of DNA Barcodes

DNA barcode reference libraries linked to voucher specimens create new opportunities for high-throughput identification and taxonomic re-evaluations. This study provides a DNA barcode library for about 45% of the recognized species of Canadian Hemiptera, and the publically available R workflow used for its generation. The current library is based on the analysis of 20,851 specimens including 1849 species belonging to 628 genera and 64 families. These individuals were assigned to 1867 Barcode Index Numbers (BINs), sequence clusters that often coincide with species recognized through prior taxonomy. Museum collections were a key source for identified specimens, but we also employed high-throughput collection methods that generated large numbers of unidentified specimens. Many of these specimens represented novel BINs that were subsequently identified by taxonomists, adding barcode coverage for additional species. Our analyses based on both approaches includes 94 species not listed in the most recent Canadian checklist, representing a potential 3% increase in the fauna. We discuss the development of our workflow in the context of prior DNA barcode library construction projects, emphasizing the importance of delineating a set of reference specimens to aid investigations in cases of nomenclatural and DNA barcode discordance. The identification for each specimen in the reference set can be annotated on the Barcode of Life Data System (BOLD), allowing experts to highlight questionable identifications; annotations can be added by any registered user of BOLD, and instructions for this are provided.     

Implications of collection patterns of botanical specimens on their usefulness for conservation planning: an example of two neotropical plant families (Moraceae and Myristicaceae) in Peru

We evaluated the usefulness of herbarium collection databases for assessing patterns of species diversity and distribution based on a dataset from the flowering plant families Moraceae and Myristicaceae from the Peruvian Amazon. For Moraceae, a total of 3523 collections were used representing 134 species. The Myristicaceae were represented by 2113 collections of 46 species. We evaluated the distribution of collections based on 252 grid cells (0.5° size) covering all lowland rainforest in the Peruvian Amazon. We found that collections were concentrated in a few cells and that species diversity clearly increases in relation to collection density. Moraceae were collected in only 45% and Myristicaceae in only 31% of the 252 grid cells. Fifty percent of the collections came from just six and three cells, respectively. Most species were represented by only a small number of collections and collected only in a few grid cells, meaning a few widespread common species tend to dominate the collection records. Not surprisingly, most collections were made close to towns and transport routes. We evaluated the usefulness of rarefaction curves and diversity estimators for comparing diversity between regions. These techniques seem to be of little use for botanical collections due to violations of underlying assumptions. Problems such as accuracy of geographic and taxonomic data and strong bias in the spatial representation of the whole dataset are important to consider when basing conservation analysis, planning, and decision-making on seemingly large databases of biodiversity collections and are discussed in detail.     

Evaluation of three techniques for the study of harvester ant (Pogonomyrmex spp.) diet

The estimation of an ant's diet is crucial in many ecological studies. Different techniques, which involve different assumptions and field procedures, have been used to estimate the composition of harvester ant diet. In this study, three techniques are compared for the estimation of the diet of Pogonomyrmex rastratus (Mayr), Pogonomyrmex pronotalis (Santschi), and Pogonomyrmex inermis (Forel) in the central Monte desert, Argentina: (1) hand collection of items brought back to the nest by foragers, (2) collection of items with a semiautomated device with pitfall traps, and (3) collection of the discarded material accumulated in middens. The hand collection technique and the collection of middens provided the lowest and the highest number of items, respectively. Midden samples and pitfall traps contained a higher proportion of nonseed items, probably coming from sources other than ants, than hand-collected items. The three techniques provided similar estimations of species richness but a bias against small seeds was detected for P. pronotalis and P. inermis with the hand collection technique, possibly because of the difficulty of collecting small items by hand. The percentage of seed species in the diet obtained with different techniques was positively correlated in the great majority of colonies. Overall, despite their intrinsic differences, the three techniques proved consistent, which constitutes a robustness test for the estimations obtained. In comparative ecological studies, the awareness that results depend on the techniques and their assumptions is particularly important.     

Role of granivory and insectivory in the life cycle of the carabid beetle Amara similata

1. The cereal field carabid beetle Amara similata was selected to elucidate the role of seeds and insects as food sources. Three experiments were performed to rank different weed seeds and insects in terms of food value: (i) fecundity in relation to adult diet, (ii) larval survival in relation to diet and (iii) larval survival in relation to parental diet.
2. Seeds were found to be of high value and insects of low value both for adults and larvae. Adding insects to a seed diet gave no significant improvement. The value of single species of seeds varied within adults and larvae, but also between adults and larvae. This is the first report that Amara larvae are granivorous.
3. The value of different insects varied by species. Cereal aphid species were of the lowest value both for adult and larval beetles. On a diet of mixed insects, the adults were able to produce a low number of eggs but the larvae all died before pupation.
4. There was no simple relation between survival of the larvae and the quality of the parents' diet.     

Morphological correlates of diet in an assemblage of West African freshwater fishes

Morphological correlates of diet were sought among 18 species of distantly related freshwater fishes from Guinea (West Africa). With regard to the percentage occurrence of six food items, the studied species could be classified into four broad trophic categories reflecting what was eaten and where: detritivores, piscivores, surface feeders and benthic invertivores. Detrivory was associated with a high relative gut length and eyes in a dorsal position; piscivory with large body and mouth size; surface feeding with a dorsally orientated mouth; and benthic invertivory with eyes in a lateral position and small relative gut length. Similarity in diet and in morphology were both significantly correlated with taxonomic relatedness. Nevertheless, when taxonomic relatedness was accounted for, the relationship between observed similarity in diet and similarity in diet predicted from morphology was still significant. This result leads to the conclusion that species having similar diet tend to converge for some morphological attributes.     

Species identification in the genus Saprolegnia (Oomycetes): Defining DNA-based molecular operational taxonomic units

The lack of a robust taxonomy in the genus Saprolegnia is leading to the presence of incorrectly named isolates in culture collections and of an increasing number of misassigned sequences in DNA databases. Accurate species delimitation is critical for most biological disciplines. A recently proposed approach to solve species delimitation (taxonomic diagnosis system) of difficult organisms is the definition of molecular operational taxonomic units (MOTUs). We have used 961 sequences of nrDNA ITS from culture collections (461 sequences) and GenBank (500 sequences), to perform phylogenetic and clustering optimization analyses. As result, we have identified 29 DNA-based MOTUs in agreement with phylogenetic studies. The resulting molecular clusters support the validity of 18 species of Saprolegnia and identify 11 potential new ones. We have also listed a number of incorrectly named isolates in culture collections, misassigned species names to GenBank sequences, and reference sequences for the species. We conclude that GenBank represents the main source of errors for identifying Saprolegnia species since it possesses sequences with misassigned names and also sequencing errors. The presented taxonomic diagnosis system might help setting the basis for a suitable identification of species in this economically important genus.     

Food of the zebra finch (Poephila guttata), and an examination of granivory in birds of the Australian arid zone

Birds are important granivores in the Australian arid zone, and this paper reviews their role by assembling available data on diet and habitat selection of the granivorous species occurring in the region. Paucity of dietary information is alleviated by a study of the food of the zebra finch (Poephila guttata) at two sites in the eastern arid zone. Zebra finches subsisted entirely on grass seeds of a relatively narrow specific range; 17 classes of seeds (at least 19 species) were eaten, but one class dominated the diet at each study site and only five classes (probably six species) were significant overall. Comparative information concerning granivorous species- suggested that the seeds of grasses and shrubs are of most importance in diets, that larger species tended to eat larger seeds from a wider variety of plants because of the addition of shrub species to the diet, and that Acacia shrublands contained most species. Characteristics of the arid zone that are of particular importance to granivorous birds appear to be the abundance of grasses and the patchy and erratic nature of the rainfall.     

The decline of the Turtle Dove: Dietary associations with body condition and competition with other columbids analysed using high‐throughput sequencing

Dietary changes linked to the availability of anthropogenic food resources can have complex implications for species and ecosystems, especially when species are in decline. Here, we use recently developed primers targeting the ITS2 region of plants to characterize diet from faecal samples of four UK columbids, with particular focus on the European turtle dove (Streptopelia turtur), a rapidly declining obligate granivore. We examine dietary overlap between species (potential competition), associations with body condition in turtle doves and spatiotemporal variation in diet. We identified 143 taxonomic units, of which we classified 55% to species, another 34% to genus and the remaining 11% to family. We found significant dietary overlap between all columbid species, with the highest between turtle doves and stock doves (Columba oenas), then between turtle doves and woodpigeons (Columba palumbus). The lowest overlap was between woodpigeons and collared doves (Streptopelia decaocto). We show considerable change in columbid diets compared to previous studies, probably reflecting opportunistic foraging behaviour by columbids within a highly anthropogenically modified landscape, although our data for nonturtle doves should be considered preliminary. Nestling turtle doves in better condition had a higher dietary proportion of taxonomic units from natural arable plant species and a lower proportion of taxonomic units from anthropogenic food resources such as garden bird seed mixes and brassicas. This suggests that breeding ground conservation strategies for turtle doves should include provision of anthropogenic seeds for adults early in the breeding season, coupled with habitat rich in accessible seeds from arable plants once chicks have hatched.     

Waterbird communities and seed biomass in managed and reference‐restored wetlands in the Mississippi Alluvial Valley

The Natural Resources Conservation Service (NRCS) commenced the Migratory Bird Habitat Initiative (MBHI) in summer 2010 after the April 2010 Deepwater Horizon oil spill in the Gulf of Mexico. The MBHI enrolled in the program 193,000 ha of private wet‐ and cropland inland from potential oil‐impaired wetlands. We evaluated waterfowl and other waterbird use and potential seed/tuber food resources in NRCS Wetland Reserve Program easement wetlands managed via MBHI funding and associated reference wetlands in the Mississippi Alluvial Valley of Arkansas, Louisiana, Mississippi, and Missouri. In Louisiana and Mississippi, nearly three times more dabbling ducks and all ducks combined were observed on managed than reference wetlands. Shorebirds and waterbirds other than waterfowl were nearly twice as abundant on managed than referenced wetlands. In Arkansas and Missouri, managed wetlands had over twice more dabbling ducks and nearly twice as many duck species than reference wetlands. Wetlands managed via MBHI in Mississippi and Louisiana contained ≥1.3 times more seed and tuber biomass known to be consumed by waterfowl than reference wetlands. Seed and tuber resources did not differ between wetlands in Arkansas and Missouri. While other studies have documented greater waterbird densities on actively than nonmanaged wetlands, our results highlighted the potential for initiatives focused on managing conservation easements to increase waterbird use and energetic carrying capacity of restored wetlands for waterbirds.     

Gradients in richness and turnover of a forest passerine's diet prior to breeding: A mixed model approach applied to faecal metabarcoding data

Rather little is known about the dietary richness and variation of generalist insectivorous species, including birds, due primarily to difficulties in prey identification. Using faecal metabarcoding, we provide the most comprehensive analysis of a passerine's diet to date, identifying the relative magnitudes of biogeographic, habitat and temporal trends in the richness and turnover in diet of Cyanistes caeruleus (blue tit) along a 39 site and 2° latitudinal transect in Scotland. Faecal samples were collected in 2014–2015 from adult birds roosting in nestboxes prior to nest building. DNA was extracted from 793 samples and we amplified COI and 16S minibarcodes. We identified 432 molecular operational taxonomic units that correspond to putative dietary items. Most dietary items were rare, with Lepidoptera being the most abundant and taxon‐rich prey order. Here, we present a statistical approach for estimation of gradients and intersample variation in taxonomic richness and turnover using a generalised linear mixed model. We discuss the merits of this approach over existing tools and present methods for model‐based estimation of repeatability, taxon richness and Jaccard indices. We found that dietary richness increases significantly as spring advances, but changes little with elevation, latitude or local tree composition. In comparison, dietary composition exhibits significant turnover along temporal and spatial gradients and among sites. Our study shows the promise of faecal metabarcoding for inferring the macroecology of food webs, but we also highlight the challenge posed by contamination and make recommendations of laboratory and statistical practices to minimise its impact on inference.