Neurophysiological and simulation study of the striate receptive fields maps: the role of intracortical interaction

In 27 acute experiments with anesthetized and immobilized adult cats 101 maps of receptive field (RF) in 67 striate neurons were studied by means of mapping with single flashed stimuli presented in different parts of the visual field and under conditions of additional activation of the RF excitatory center by the local oscillating or flashing grid. Under conditions of both classical and combined modes of mapping, the RFs of the classical shape with a single excitatory zone (63.4 and 29.3% of cases, respectively) and RFs with multiple (2-5) excitatory and/or inhibitory zones (36.6 and 70.7%, respectively) were found. We were the first to describe, also, some RFs of horseshoe-like, cross-like and T-like shapes. Simulation of non-classical RFs revealed possible contributions of cooperative excitatory and inhibitory intracortical interactions to the effects under study. The functional role of RFs of different types in the feature detection is discussed.     

Formation and functional significance of the dark receptive fields of the cat visual cortex

Receptive fields (RFs) of single units in the 17th field of the visual cortex of immobilized cat were investigated under dark adaptation. The mean RF size was equal to 67 degrees and varied from 3 degrees up to 120 degrees. The RFs with centres located near gaze were from 3 degrees up to 120 degrees in dia, but with growth of excentricity the number of small RFs decreased, and in the region of 70 to 100 degrees from gaze only RFs with diameters equal to 100 degrees were found. The shape of "dark" RFs was either ellipsoidal (in most cases) or round. Detector properties (orientational, directional, size and velocity selectivity) of the "dark" RFs were significantly less manifest or absent. Under photopic light adaptation the same units reorganized their RFs to well known sizes and configuration. The hypothesis is discussed of the formation of local detector RF in the visual cortex in light adaptation by selective cortical inhibition which is activated in darkness only slightly. This view is an alternative to the commonly-accepted scheme of local cortical RF formation by the hierarchical and selective excitatory convergence.     

Adaptability of the receptive fields of neurons of the posterior temporal cortex and their sensitivity to parameters of photic stimulation in the cat

Study of receptive fields (RFs) of neurones in the postero-temporal cortex (field 21) of alert cat at three levels of visual adaptation: light photopic, light mesopic and practically dark or extremely low scotopic adaptations--revealed invariance of the most part of the studied RFs to the level of visual adaptation. Reorganization of RFs, connected with change of background luminosity were observed only in 12% of visually activated neurones. Significant reduction of responses to optic stimulation is shown at increase of the level of luminosity in 75% of neurones, revealing adaptive reorganizations. It is suggested that these reorganizations may take place in analogy with neurones of the field 17 on account of different involvement of intracortical inhibitory mechanisms (and, probably, not only in the postero-temporal cortex, but also in structures which precede it in visual hierarchy). Study of neurones sensitivity in the field 21 to parameters of optic stimulation revealed their considerable invariance to the length and orientation of the optic stimulus moving through the RF (60% of cases). Testing of RF by a rhombic optic stimulus did not change neuronal reactions, the form and dimensions of RF did not significantly change.     

Spatial structure of complex cell receptive fields measured with natural images

Neuronal receptive fields (RFs) play crucial roles in visual processing. While the linear RFs of early neurons have been well studied, RFs of cortical complex cells are nonlinear and therefore difficult to characterize, especially in the context of natural stimuli. In this study, we used a nonlinear technique to compute the RFs of complex cells from their responses to natural images. We found that each RF is well described by a small number of subunits, which are oriented, localized, and bandpass. These subunits contribute to neuronal responses in a contrast-dependent, polarity-invariant manner, and they can largely predict the orientation and spatial frequency tuning of the cell. Although the RF structures measured with natural images were similar to those measured with random stimuli, natural images were more effective for driving complex cells, thus facilitating rapid identification of the subunits. The subunit RF model provides a useful basis for understanding cortical processing of natural stimuli.     

The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure

Bacterial class I release factors (RFs) are seen by cryo-electron microscopy (cryo-EM) to span the distance between the ribosomal decoding and peptidyl transferase centers during translation termination. The compact conformation of bacterial RF1 and RF2 observed in crystal structures will not span this distance, and large structural rearrangements of RFs have been suggested to play an important role in termination. We have collected small-angle X-ray scattering (SAXS) data from E. coli RF1 and from a functionally active truncated RF1 derivative. Theoretical scattering curves, calculated from crystal and cryo-EM structures, were compared with the experimental data, and extensive analyses of alternative conformations were made. Low-resolution models were constructed ab initio, and by rigid-body refinement using RF1 domains. The SAXS data were compatible with the open cryo-EM conformation of ribosome bound RFs and incompatible with the crystal conformation. These conclusions obviate the need for assuming large conformational changes in RFs during termination.     

Studies of functional connectivity in the developing and mature visual cortex

We have investigated several aspects of cortical organization in adult cats and in young kittens. First, we determined receptive field (RF) maps of correlated discharge between pairs of cortical cells. Unique bicellular RFs appear to convey high resolution information. Second, we studied the dynamics of neural interaction between pairs of cells. Using cross-correlation analysis, we studied monosynaptic and polysynaptic interactions in both kittens and cats. A somewhat surprising finding is that there were no cases of monosynaptic excitation from simple to complex cells as would be predicted by a simple hierarchical processing theory. Third, we studied length and side tuning characteristics of cortical cells and worked out the relationships between them. Fourth, we carried out an investigation of binocular processing in which we compared monocular and binocular sensitivity of cortical cells with respect to contrast. Our results are comparable to those found in psychophysical work. Fifth, we examined how stereoscopic depth information is encoded by simple cells in the visual cortex. We show that structural differences in RFs of left and right eyes may be expressed in terms of phase. Phase-based encoding appears to be a very plausible alternative to the standard position-based notion. Sixth, we attempted to induce plastic changes in connections between cell pairs by long-term activation (up to 2 h) in kittens and cats. Although connection strength between some cell pairs was increased during long-term activation, there was no consistent pattern of this effect. Seventh, we attempted to study the functional basis of reported claims of RF expansion following use of an artificial scotoma. However, we found no receptive field size change from this procedure. For some cells, there is an apparent change of gain in the form of base (spontaneous) rates and absolute response levels. Finally, we have examined RF dynamics in the central visual pathways. The standard treatment of RFs is to consider only spatial aspects. But the RF is inherently both temporal and spatial in nature and we have examined the dynamics of spatiotemporal organization of RFs in central visual pathways.     

Cellular effects of electromagnetic fields

Studies at the cellular level are needed to reveal the cellular and molecular biological mechanisms underlying the biological effects and possible health implications of non-ionising radiation, such as extremely low frequency (ELF) magnetic fields (MFs) and radiofrequency (RF) fields. Our research group has studied the effects of 50 Hz ELF MFs (caused by power lines and electric devices) and 872 MHz or 900 MHz RFs (emitted by mobile phones and their base stations) on cellular ornithine decarboxylase activity, cell cycle kinetics, cell proliferation, and necrotic or apoptotic cell death. For RFs, pulse-modulated (217 Hz modulation frequency corresponding a global system for mobile communication-type signal) or continuous wave (unmodulated) signals were used. To expose the cell cultures to MFs or RFs, specially developed exposure systems were used, where levels of electromagnetic field exposure and the conditions of cell culture could be precisely controlled. A coexposure approach was used in many studies, i.e. the cell cultures were exposed to other stressors in addition to MFs or RFs. Ultraviolet radiation, serum deprivation, or fresh medium addition, were used as co-exposures. The results presented in this short review show that the effects of mere MFs or RF on cell culture models are quite minor, but that various co-exposure approaches warrant additional study.     

Receptive Fields of Visually Sensitive Neurons of the Extrastriate Associative Area 21b of the Cat Cerebral Cortex

Organization of the receptive fields (RFs) of neurons of the extrastriate associative region 21b of the cerebral cortex was studied in cats. Most neurons under study (63%) were “monocular,” while 37% of the cells were “binocular” units. Among 178 neurons examined in detail, heterogeneous RF functional organization was typical of about 76% of the units; point-to-point testing of the entire RF area by stationary stimuli resulted in the generation of various types of responses (on, off, or on-off). The rest of the neurons (24%) generated homogeneous responses. The dimension, form, and functional organization of RFs of the neurons under study depended to a certain extent on the parameters of visual stimuli used for the measurements. Examination of the influence of the visual space, which surrounded the RF, on responses of the neurons evoked by stimulation of the RF per se showed that darkening of the visual space adjacent to the RF inhibited neuronal responses to moving stimuli; in some cases the responses were totally suppressed. Analysis of spatial overlapping of the RF sequentially recorded in the course of each insertion of the electrode showed that the density of distribution of the overlapping RF areas of neighboring neurons with the RF of the examined neuron is irregular, and that the RF is of a mosaic nature. We hypothesize that the visual space surrounding the RF plays a significant role in the formation of responses of visually sensitive neurons to presentation of moving stimuli. Neirofiziologiya/Neurophysiology, Vol. 37, No. 3, pp. 223–234, May–June, 2005.     

Types of receptive fields in the lateral geniculate body and their functional model

In the Type I receptive fields (RFs) changes of the luminance leads to a shift of the curve relating the response and the stimulus area along the abscissa, in the Type II RFs the maximum of a response does not shift with changes of the luminance (Types I and II on classification by Glezer et al., 1971, 1972). The transient responses were observed in the Type I RFs and sustained responses in the Type II RFs. In the Type I RFs variation of the stimulus area and intensity brings about the change in the temporal and spatial frequency characteristics. This is produced by functional reorganization of the RF. In the Type II RFs there is no functional reorganization. The data obtained indicate that the Type I RFs are non-linear. By contrast, the Type II RFs are linear systems. The analysis of the model has shown that the distinctions in the dynamic characteristics of the responses of RFs belonging to different types is mainly due to different time constants for excitation and inhibition as well as inhibition coefficients. Distinctions in the mode of dependence of the RF response on stimulus parameters have been found to result from different relationship between delay time and stimulus parameters as well as different forms of the spatial weighting functions. It is shown that the Type I RFs transmit higher frequency components of the image spectrum, i.e. they emphasise the temporal and spatial contrasts. The Type II RFs transmit low frequency components of the spectrum including information about the intensity of an input stimulus.     

Responses of neurons of the extrastriate cortex of the cat brain to moving stimuli of different forms

We examined responses of neurons of the field 21b of the cat brain cortex to presentation of moving visual stimuli of different forms. Characteristics of the responses of about 54% of the studied neurons showed that in these cases configurations of the contours of moving stimuli were to a certain extent discriminated. Most neurons selectively reacting to changes in the form of the stimulus were dark-sensitive units (they generated optimum responses to presentation of dark visual stimuli on the light background). Detailed examination of the spatial infrastructure of receptive fields (RFs) of the neurons and comparison of this structure with the selectivity of neuronal responses showed that there is no significant correlation between static organization of the RF and responses of the neuron to the movements of stimuli of different forms. We hypothesize that the dynamic infrastructure of the RF and the combined activity of functional groups of neurons, whose RFs spatially overlap the RF of the neuron under study, play a definite role in the mechanisms responsible for neuronal discrimination of the form of the visual stimulus. Neirofiziologiya/Neurophysiology, Vol. 38, No. 1, pp. 61–71, January–February, 2006.     

Spatio-temporal organization of receptive fields of the cat striate cortex

The responses of cortical cells to gratings and bars were compared. The excitatory and inhibitory on-and off-zones of a simple cell are composed of on- and off-subfields of CGL. Any zone is formed by an opponent pair of subfields one of which gives an excitatory effect, the other — inhibitory. Such organization assumes the linear properties of a simple field. The deviations from linearity are due to spatial dis-placements of the subfields, heterogeneity of subfields, or the absence of one subfield in the opponent pair. Subfields may be both phasic and tonic, even in the same RF. Analysis of the most common type of a complex cell with modulated responses against unmodulated background shows that a mask eliminating stimulation of any half of the RF causes (according to the theory of filtres) increasing the bandwidth due to the increase or the appearance of responses to side low and high frequencies. The modulated components of the responses from both halves of the RF are out of phase. Analysis of this fact and the responses to thin bars suggests that a complex field is formed by linear and nonlinear subsystems converging onto output neuron. Other types of complex fields are organized by different combinations of subsystems. Limited in area by masking the RF responds to much higher spatial frequencies than the whole RF. The optimal frequency in two-dimensional spatial frequency characteristics of the RF does not change with orientation. Simple RFs and a part of complex RF calculate the amplitude and the phase of the stimulus, the other part of complex RFs (with unmodulated response) calculate only amplitude. Given all this, the RFs are grating filters of spatial frequency.     

Binocularly driven neurons in the rostral part of the frog optic tectum

Summary Receptive field (RF) properties of binocular neurons lying in the rostral part of the optic tectum of the frog (Rana esculenta) were studied electrophysiologically using conventional visual stimuli. They were classified into five groups: group 1 neurons have indefinite RF; group 2 neurons are total-field (T6) neurons; group 3 neurons have RFs covering a quadrant of the frontal visual field; group 4 neurons resemble T 1(1) and T 1(3) subclasses described earlier; and finally group 5 neurons look like small-field binocular neurons and are called T7(B). Moreover, RF disparity measurements conducted in all groups suggest that group 4 neurons support the estimation of binocular distance. This problem is discussed.Abbreviation RF receptive field     

Alpha- and beta-oscillations of dynamics of the area and weight of receptive fields of cat striate neurons under conditions of classical and combined mapping

In 22 acute experiments in anesthetized and immobilized adult cats the dynamics of 83 receptive fields (RF) of 47 striate neurons was studied by temporal slices method. Classical mapping revealed wave-like changes in the area and weight of neuronal RFs. Special mathematical analysis showed that such changes represented a sum of a slow non-oscillatory and comparatively fast components. The slow component was a biphasic up and down RF dynamics. In most cases, the oscillation frequencies were within the alpha- and beta- EEG frequency ranges. When the RF center was activated additionally during combined mapping, the oscillations frequencies remained unchanged, but the duration and amplitude of non-oscillatory component substantially decreased. Mechanisms underlying the RF dynamics and its functional significance are discussed.     

Assembly of the dorsal horn somatotopic map

We hypothesize: (a) peripheral innervation densities determine map scales in dorsal horn, (b) dorsal horn cell (DHC) receptive field (RF) geometries are determined by map scales, and (c) morphologies of primary afferents (PAs) and DHCs reflect their developmental history. We suggest the following sequence: (A) PAs project in a somatotopic mediolateral sequence. (B) DHCs assemble prototype RFs by sampling presynaptic neuropil with their dendrites. (C) PAs then project to all levels where their RFs are contained within prototype RFs of DHCs. (D) A competitive mechanism produces the adult form of DHC RFs. (E) Adult distributions of PA terminals and DHC dendrites reflect this developmental history. (F) Mediolateral somatotopic gradients are determined by RF densities of axons entering at the same levels. (G) Map scales at different rostrocaudal levels are determined by somatotopic gradients. (H) Geometries of DHC RFs are determined by constant convergence and divergence of monosynaptic connections. (I) Secondary processes further modify geometries of DHC RFs. (J) Residual self-organizing capacity supports maintenance and plastic mechanisms. We adduce the following evidence: (1) agreement between monosynaptically coupled inputs and cells' excitatory low threshold mechanoreceptive fields; (2) the temporal sequence of events during penetration of the gray matter by PAs; (3) variation of PA terminal and DHC dendritic domains as a function of map scale; (4) somatotopic gradients and geometries of DHC RFs in adult dorsal horn; (5) calculations of peripheral innervation densities and dorsal horn map scales; and (6) constant divergence and convergence between PAs and DHCs.     

The structure of barley stripe mosaic virus double-stranded RNAs

The terminal structures of the double-stranded replicative forms (RFs) of barley stripe mosaic virus (BSMV) RNAs 1–3 have been investigated. All three BSMV RFs have identical right-hand ends but unique left-hand ends. The plus (+) strands of RFs lack the 3′-ultimate A typical for the encapsidated BSMV RNAS. The 3′-termini of the minus (−) strands contain an unpaired G. It was demonstrated that the internal poly(A) tract of BSMV genome has an equivalent poly(U)-counterpart in the RF (−) strands. The possible role of these peculiarities of BSMV RF structure in RNA replication is discussed.     

Mapping rheumatoid factor binding sites using genetically engineered, chimeric IgG antibodies.

We are using chimeric IgG antibodies consisting of murine variable regions joined to human constant regions as rheumatoid factor (RF) binding substrates to localize and map IgM RF binding sites on IgG. Using chimeric antibodies in a modified RF ELISA, we showed that RFs from rheumatoid arthritis (RA) and Waldenstrom's macroglobulinemia (WMac) patients differ in their binding specificities for IgG3, although some of these RFs share common specificity for IgG1, IgG2, and IgG4. By shuffling constant region domains between IgG3 and IgG4, we showed that sequence variation in the CH3 domain is responsible for WMac-derived RF differentiation of IgG3 and IgG4. By making site-directed mutations in the wild-type IgG3 or IgG4 human gamma constant genes, we showed that His-435 is an essential residue in RF binding to IgG for most WMac RFs. The allotypic polymorphism in IgG3 at 436 is not responsible for differences in previous reports of high-frequency IgG3 binding by WMac RFs. A amino acid loop in the CH2 domain of IgG4 proximal to the CH2-CH3 interface is important in WMac RF binding to IgG; a more distal CH2 loop in CH2 has a more variable effect on WMac RF binding. To evaluate the contribution of the N-linked carbohydrate moiety at Asn-297 to RF binding sites on IgG, we measured RF binding to aglycosylated IgG antibodies produced by mutating the glycosylation signal Asn-297 to another amino acid. Of all four IgG subclasses, only aglycosylated IgG3 was a better RF binding substrate than its glycosylated subclass counterpart.(ABSTRACT TRUNCATED AT 250 WORDS)     

Molecular recognition and catalysis in translation termination complexes

When the ribosome machinery reaches a stop codon in the mRNA, protein synthesis stops, and nascent polypeptide release is catalysed by class-I release factors (RFs); class-II RFs then promote the release of class-I RFs. Cryo electron microscopy structures of termination complexes and crystal structures of isolated factors have provided insights into key concepts such as bridging of active sites on the ribosome, and conformational changes that regulate the termination process. Recent crystal structures of the four possible functional ribosome complexes that contain the class-I RFs and the three stop codons have uncovered the molecular mechanisms by which RF1/RF2 (i) both recognise UAA, but discriminate specifically between UAG and UGA, and (ii) catalyse peptide release. Moreover, ongoing research also promises to reveal the structure-function relations of class-II RFs.     

Pre-replication assembly of E. coli replisome components

The localization of SeqA, thymidylate synthase, DnaB (helicase) and the DNA polymerase components alpha and tau, has been studied by immunofluorescence microscopy. The origin has been labelled through GFP-LacI bound near oriC. SeqA was located in the cell centre for one replication factory (RF) and at 1/4 and 3/4 positions in pre-divisional cells harbouring two RFs. The transition of central to 1/4 and 3/4 positions of SeqA appeared abrupt. Labelled thymidylate synthetase was found all over the cell, thus not supporting the notion of a dNTP-synthesizing complex exclusively localized near the RF. More DnaB, alpha and tau foci were found than expected. We have hypothesized that extra foci arise at pre-replication assembly sites, where the number of sites equals the number of origins, i.e. the number of future RFs. A reasonable agreement was found between predicted and found foci. In the case of multifork replication the number of foci appeared consistent with the assumption that three RFs are grouped into a higher-order structure. The RF is probably separate from the foci containing SeqA and the hemi-methylated SeqA binding sites because these foci did not coincide significantly with DnaB as marker of the RF. Co-labelling of DnaB and oriC revealed limited colocalization, indicating that DnaB did not yet become associated with oriC at a pre-replication assembly site. DnaB and tau co-labelled in the cell centre, though not at presumed pre-replication assembly sites. By contrast, alpha and tau co-labelled consistently suggesting that they are already associated before replication starts.     

Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis.

Although the primary structures of class 1 polypeptide release factors (RF1 and RF2 in prokaryotes, eRF1 in eukaryotes) are known, the molecular basis by which they function in translational termination remains obscure. Because all class 1 RFs promote a stop-codon-dependent and ribosome-dependent hydrolysis of peptidyl-tRNAs, one may anticipate that this common function relies on a common structural motif(s). We have compared amino acid sequences of the available class 1 RFs and found a novel, common, unique, and strictly conserved GGQ motif that should be in a loop (coil) conformation as deduced by programs predicting protein secondary structure. Site-directed mutagenesis of the human eRF1 as a representative of class 1 RFs shows that substitution of both glycyl residues in this motif, G183 and G184, causes complete inactivation of the protein as a release factor toward all three stop codons, whereas two adjacent amino acid residues, G181 and R182, are functionally nonessential. Inactive human eRF1 mutants compete in release assays with wild-type eRF1 and strongly inhibit their release activity. Mutations of the glycyl residues in this motif do not affect another function, the ability of eRF1 together with the ribosome to induce GTPase activity of human eRF3, a class 2 RF. We assume that the novel highly conserved GGQ motif is implicated directly or indirectly in the activity of class 1 RFs in translation termination.     

Interference of rheumatoid factor activity by aspartame, a dipeptide methyl ester

Circulating autoimmune complexes of IgM rheumatoid factors (RF) bound to the Fc portions of normal, polyclonal IgG antibodies are frequently present in humans with rheumatoid arthritis (RA). The sweet tasting methyl ester of L-Asp-L-Phe (aspartame or APM) was found to relieve pain and improve joint mobility in subjects with osteo- and mixed osteo/rheumatoid arthritis [Edmundson, A. B. and Manion, C. V. (1998). Clin. Pharmac. Ther. 63, 580-593]. These clinical observations prompted the testing of the inhibition by APM of the binding interactions of human IgM RFs with IgG Fc regions. The propensity of APM to inhibit IgM RF binding was assessed by competitive enzyme immunoassays with solid-phase human IgG. Ten RA serum samples and three purified monoclonal cryoglobulins, all of which had RF activity, were tested in this system. We found that the presence of APM significantly reduced the binding of IgM RFs. The inhibitory propensity of APM with monoclonal RF cryoglobulins was increased by the addition of CaCl(2) to the binding buffer. Similar inhibition of the binding of RA derived RFs to IgG was observed for Asp-Phe and its amidated derivative, indicating that the methyl ester is not required for APM's interaction with IgM antibodies. A human (Mez) IgM known to bind octameric peptides derived from the Fc portion of a human IgG(1) antibody was tested for binding of dipeptides by the Pepscan method of combinatorial chemistry. The relative binding constants of Asp-Phe and Phe-Asp were ranked among the highest values for 400 possible combinations of the 20 most common amino acids. Possible blocking interactions of APM were explored by computer-assisted docking studies with the model of a complex of an RF Fab with the Fc of a human IgG(4) antibody. Modeling of ternary immune complexes revealed a few key residues, which could act as molecular recognition sites for APM. A structural hypothesis is presented to explain the observed interference with RF reactivity by APM. Extrapolations of the current results suggest that APM may inhibit the binding of IgG in a substantial proportion of IgM RFs. Interference of RF reactivity, especially in RA patients, may alleviate the pain and immobility resulting from chronic inflammation of the joints.